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Perrine Paul-Gilloteaux
46%
Libre accès
35
Documents
Affiliations actuelles
Identifiants chercheurs
- perrine-paul-gilloteaux
- 0000-0002-4822-165X
- IdRef : 236865714
- ResearcherId : L-8287-2018
- Arxiv : paulgilloteaux_p_1
- ResearcherId : http://www.researcherid.com/rid/L-8287-2018
Présentation
I'm a CNRS Research Engineer, specialized in computer vision and bio image analysis.
After my electrical engineering studies, with a computer vision option, I did my PhD with a company (Medtronic Surgical Navigation, Boulder USA) and the ViSages team (INRIA, INSERM, CNRS) under the supervision of Dr. Pierre Jannin.
I was working on the tracking of deformations of the brain during craniotomy in brain surgery, in order to relocate information from different exams of the patient , in particular indicated functional areas, such as language or motor area of the brain and to display them in the surgical microscope. For this, I was creating stereoscopic reconstruction from the surgical microscope binocular, and I developed a new method for the tracking of surface deformation, based on an hybrid approach of point cloud registration and of video tracking.
I did a first postdoc as experienced Researcher in a Marie-Curie network, ARIS\*ER to work on augmented reality in surgery, and in particular the segmentation of tumors in ultrasound based on wavelet analysis of the ultrasound raw signal.
I then got a post-doc position in Maynooth, Ireland (close to Dublin), in the Hamilton Institute which is an applied mathematics institute. I was in the Systems Biology group, where I've developed with my colleagues an intelligent fluorescent microscope, taking the decision of the area to image and of the frequency of acquisition, based on real time analysis of the image content (cell segmentation and cell tracking).
In 2010, I joined the CNRS as research Engineer in the PICT IBISA cell and tissue microscopy facility in Institut Curie, Paris, France. My job was to support the biologists in image analysis, by adapting existing sofwtare or developping new methods.
In June 2015, I've joined the [Structure Federative de Recherche in Health](https://sfrsante.univ-nantes.fr/) of Nantes (France), where I work for the facility, and on my own research activities
I am now leading R&D activities in multimodal image analysis, through the [ANR CROCOVAL](https://anrcrocoval.github.io/) , and heading [MicroPICell](https://micropicell.univ-nantes.fr/), a microscopy facility performing services and R& D in histology, photonic microscopy and image analysis and management. I am one of the co-funder of COST action [NEUBIAS](http://www.neubias.org), for which I lead the group creating [biii.eu](http://www.biii.eu) and [edam bio imaging](https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING?p=classes) and is part of the core group managing the full network, and vice chair and the [COMULIS](https://www.comulis.eu/) COST action.
Domaines de recherche
Publications
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Linking and analyzing correlative datasetsALL-HANDS NODES MEETINg&MORE, iNext DISCOVERY, Apr 2023, Heidelberg, Germany
Communication dans un congrès
hal-04217201v1
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Correlative microscopies : image registration for clem and for deep learning What can bring error estimation ?Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Instituts 3IA MIAI, 3IA Cote d'Azur et PRAIRIE, Mar 2023, Paris, France
Communication dans un congrès
hal-04217245v1
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Correlative microscopies : comulisglobe and news from ec-clemFrance BioImaging CLEM day: What's new in multimodal imaging, Mar 2023, Paris, France
Communication dans un congrès
hal-04217188v1
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Image analysis tools and applications for correlative microscopySéminaire de l'Institut de Génétique & Développement de Rennes, Apr 2023, Rennes, France
Communication dans un congrès
hal-04217158v1
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Development of correlation software for Correlative cryo light Soft X-Ray Tomography : example of 3d correlative cryo-structured illumination fluorescence and soft x-ray microscopy to ellucidate reovirus intracellular release pathwayINSTRUCT Soft X-ray Tomography workshop, Sep 2023, Didcot, United Kingdom
Communication dans un congrès
hal-04217085v1
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Correlative microscopies: image registration for CLEM and for Deep LearningCrick BioImage Analysis Symposium (CBIAS), Nov 2022, Londres (London), United Kingdom
Communication dans un congrès
hal-04217278v1
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La tomographie par cohérence optique plein champ : un nouvel outil de microscopie optique dynamique pour l'analyse du système nerveux entériqueJFHOD, Mar 2022, Paris, France
Communication dans un congrès
hal-03548856v1
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Image processing and analysis in clem : methods and pitfallsSymposium on recent developments in cellular electron microscopy, AVIESAN ITMO MOLECULAR AND STRUCTURAL BASIS OF LIFE SCIENCES, Mar 2022, Paris, France
Communication dans un congrès
hal-04217262v1
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A FULL 3D CORRELATIVE IMAGING WORKFLOW: CHALLENGES IN COMPUTER VISIONIEEE ISBI 2021 (VIRTUAL)., Apr 2021, Nice, France
Communication dans un congrès
hal-03258718v1
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Méthodes et écueils du traitement des images issues de microscopie corrélative6eme rencontre des microscopistes clermontois, Igred et Inrae, Oct 2021, Clermont-Ferrand, France
Communication dans un congrès
hal-04214182v1
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EcClemv2: A new version of a flexible software for correlative workflowsCOMULIS Conference, Sep 2021, Gothenburg, Sweden
Communication dans un congrès
hal-04219791v1
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A Registration Error Estimation Framework for Correlative Imaging2021 IEEE International Conference on Image Processing (ICIP), Sep 2021, Anchorage, United States. pp.131-135, ⟨10.1109/ICIP42928.2021.9506474⟩
Communication dans un congrès
hal-03327500v1
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Cross-modal registration using point clouds and graph-matching in the context of correlative microscopiesiTWIST : international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques, Dec 2020, Nantes, France
Communication dans un congrès
hal-03039114v1
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Leveraging Molecular and Cellular Fiducial Markers for Correlative Bio-ImagingQuantitative BioImaging, Jan 2020, Oxford, United Kingdom
Communication dans un congrès
hal-04219534v1
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Quantification: extracting quantitative information from correlated multimodal datasetIMAGE PROCESSING FOR CORRELATED AND MULTIMODAL IMAGING TECHNIQUES, VIB Training, Oct 2020, Ghent, Belgium
Communication dans un congrès
hal-04214173v1
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RECALAGE EN MICROSCOPIES CORRÉLATIVES POUR LA CARACTÉRISATION PHYSIOPATHOLOGIQUE DE LA VALVULOPATHIE16eme colloque de la société Française des Microscopies, Jul 2019, Poitiers, France
Communication dans un congrès
hal-02745967v1
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Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal AcquisitionsSCANDEM 2019, Jun 2019, Gothenburg, Sweden
Communication dans un congrès
hal-02736339v1
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Linking cell scales: methods and software for correlative imaging workflowsLa microscopie électronique pour les sciences du vivant. Journées Scientifiques de l'Université de Nantes, Jun 2019, Nantes, France
Communication dans un congrès
hal-02745260v1
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Introduction to Correlation Software in CLEMCorrelated Multimodal Imaging Conference, Nov 2019, Vienne, Austria
Communication dans un congrès
hal-02744299v1
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Registration and error estimation in correlated multimodal imagingCorrelated Multimodal Imaging Conference, Nov 2019, Vienna, Austria
Poster de conférence
hal-02744368v1
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Analyse d’un échantillon en 3 dimensions par une technique de Serial Block Face Imaging amovibleAFH 2019, Jun 2019, Strasbourg, France
Poster de conférence
hal-02267585v1
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Computer-assisted analysis of multimodal image data—perspectives and conclusionImaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2, IOP Publishing, 2021, ⟨10.1088/978-0-7503-3747-2ch30⟩
Chapitre d'ouvrage
hal-03232548v1
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Label-free imaging of large samples: 3D rendering and morphological analysis within histological workflows using serial block face imaging2022
Pré-publication, Document de travail
hal-03745095v1
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In-situ fiducial markers for 3D correlative cryo- fluorescence and FIB-SEM imaging2021
Pré-publication, Document de travail
hal-03171819v1
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