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    CV Perrine Paul-Gilloteaux


    I'm a CNRS Research Engineer, specialized in computer vision and bio image analysis.
    After my electrical engineering studies, with a computer vision option, I did my PhD with a company (Medtronic Surgical Navigation, Boulder USA) and the ViSages team (INRIA, INSERM, CNRS) under the supervision of Dr. Pierre Jannin.
    I was working on the tracking of deformations of the brain during craniotomy in brain surgery, in order to relocate information from different exams of the patient , in particular indicated functional areas, such as language or motor area of the brain and to display them in the surgical microscope. For this, I was creating stereoscopic reconstruction from the surgical microscope binocular, and I developed a new method for the tracking of surface deformation, based on an hybrid approach of point cloud registration and of video tracking.
    I did a first postdoc as experienced Researcher in a Marie-Curie network, ARIS*ER to work on augmented reality in surgery, and in particular the segmentation of tumors in ultrasound based on wavelet analysis of the ultrasound raw signal.
    I then got a post-doc position in Maynooth, Ireland (close to Dublin), in the Hamilton Institute which is an applied mathematics institute. I was in the Systems Biology group, where I've developed with my colleagues an intelligent fluorescent microscope, taking the decision of the area to image and of the frequency of acquisition, based on real time analysis of the image content (cell segmentation and cell tracking).
    In 2010, I joined the CNRS as research Engineer in the PICT IBISA cell and tissue microscopy facility in Institut Curie, Paris, France. My job was to support the biologists in image analysis, by adapting existing sofwtare or developping new methods.
    In June 2015, I've joined the Structure Federative de Recherche in Health of Nantes (France), where I work for the facility, and on my own research activities.


    Journal articles30 documents

    • Guillaume Potier, Romain Capoulade, Jean Mérot, Frédéric Lavancier, Xavier Heiligenstein, et al.. Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal Acquisitions.. Microscopy and Microanalysis, Cambridge University Press (CUP), 2019, 25 (S2), pp.1020-1021. ⟨10.1017/S143192761900583X⟩. ⟨hal-02267554⟩
    • A. David, D. Le Touzé, K. Warin-Fresse, P. Paul-Gilloteaux, F. Bonnefoy, et al.. In-vitro validation of 4D flow MRI measurements with an experimental pulsatile flow model. Diagnostic and Interventional Imaging, Elsevier, 2019, 100 (1), pp.17-23. ⟨10.1016/j.diii.2018.08.012⟩. ⟨hal-02267542⟩
    • Xavier Heiligenstein, Perrine Paul-Gilloteaux, Graça Raposo, Jean Salamero. eC-CLEM: A multidimension, multimodel software to correlate intermodal images with a focus on light and electron microscopy.. Methods in Cell Biology, Elsevier, 2018, pp.335-352. ⟨10.1016/bs.mcb.2017.03.014⟩. ⟨hal-01712180⟩
    • Elvira Infante, Alessia Castagnino, Robin Ferrari, Pedro Monteiro, Sonia Agüera-González, et al.. LINC complex-Lis1 interplay controls MT1-MMP matrix digest-on-demand response for confined tumor cell migration. Nature Communications, Nature Publishing Group, 2018, 9 (1), ⟨10.1038/s41467-018-04865-7⟩. ⟨hal-02267545⟩
    • Igor Ilinsky, Andreas Horn, Perrine Paul-Gilloteaux, Pierre Gressens, Catherine Verney, et al.. Human Motor Thalamus Reconstructed in 3D from Continuous Sagittal Sections with Identified Subcortical Afferent Territories. eNeuro, Society for Neuroscience, 2018, 5 (3), pp.ENEURO.0060-18.2018. ⟨10.1523/ENEURO.0060-18.2018⟩. ⟨hal-02267562⟩
    • T. Vanhaecke, P. Aubert, P. Grohard, T. Durand, P. Hulin, et al.. L. fermentum CECT 5716 prevents stress-induced intestinal barrier dysfunction in newborn rats. Neurogastroenterology & Motility, 2017, 29 (8), ⟨10.1111/nmo.13069⟩. ⟨hal-01712194⟩
    • Perrine Paul-Gilloteaux, Xavier Heiligenstein, Martin Belle, Marie-Charlotte Domart, Banafshe Larijani, et al.. eC-CLEM: flexible multidimensional registration software for correlative microscopies. Nature Methods, Nature Publishing Group, 2017, 14 (2), pp.102 - 103. ⟨10.1038/nmeth.4170⟩. ⟨hal-01712184⟩
    • Perrine Paul-Gilloteaux, Vincent Potiron, Grégory Delpon, Stéphane Supiot, Sophie Chiavassa, et al.. Optimizing radiotherapy protocols using computer automata to model tumour cell death as a function of oxygen diffusion processes. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.2280. ⟨10.1038/s41598-017-01757-6⟩. ⟨inserm-01550008⟩
    • Marco Biondini, Amel Sadou-Dubourgnoux, Perrine Paul-Gilloteaux, Giulia Zago, Melis D Arslanhan, et al.. Direct interaction between exocyst and Wave complexes promotes cell protrusions and motility.. Journal of Cell Science, Company of Biologists, 2016, 129 (20), pp.3756-3769. ⟨10.1242/jcs.187336⟩. ⟨hal-01452011⟩
    • Florence Broders-Bondon, Perrine Paul-Gilloteaux, Elodie Gazquez, Julie Heysch, Matthieu Piel, et al.. Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin. Developmental Biology, Elsevier, 2016, 414 (1), pp.85 - 99. ⟨10.1016/j.ydbio.2016.03.022⟩. ⟨hal-01712198⟩
    • Elodie Gazquez, Yuli Watanabe, Florence Broders-Bondon, Perrine Paul-Gilloteaux, Julie Heysch, et al.. Endothelin-3 stimulates cell adhesion and cooperates with β1-integrins during enteric nervous system ontogenesis. Scientific Reports, Nature Publishing Group, 2016, 6, pp.37877. ⟨10.1038/srep37877⟩. ⟨hal-01426076⟩
    • Marie-Thérèse Prospéri, Priscilla Lépine, Florent Dingli, Perrine Paul-Gilloteaux, René Martin, et al.. Myosin 1b functions as an effector of EphB signaling to control cell repulsion. Journal of Cell Biology, Rockefeller University Press, 2015, 210 (2), pp.347 - 361. ⟨10.1083/jcb.201501018⟩. ⟨hal-01712201⟩
    • Teresa Mendes Maia, Perrine Paul-Gilloteaux, Renata Basto. Quantitative analysis of flagellar proteins in Drosophila sperm tails.. Methods in Cell Biology, Elsevier, 2015, pp.263-78. ⟨10.1016/bs.mcb.2015.01.003⟩. ⟨hal-01712207⟩
    • Sofia Traikov, Christoph Stange, Thomas Wassmer, Perrine Paul-Gilloteaux, Jean Salamero, et al.. Septin6 and Septin7 GTP Binding Proteins Regulate AP-3- and ESCRT-Dependent Multivesicular Body Biogenesis. PLoS ONE, Public Library of Science, 2014, 9 (11), pp.e109372. ⟨10.1371/journal.pone.0109372⟩. ⟨hal-01712221⟩
    • Maia Chanrion, Inna Kuperstein, Cédric Barrière, Fatima El Marjou, David Cohen, et al.. Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut. Nature Communications, Nature Publishing Group, 2014, 5, pp.5005. ⟨10.1038/ncomms6005⟩. ⟨hal-01712223⟩
    • Xavier Heiligenstein, Jérôme Heiligenstein, Cédric Delevoye, Ilse Hurbain, Sabine Bardin, et al.. The CryoCapsule: Simplifying Correlative Light to Electron Microscopy. Traffic, Wiley, 2014, 15 (6), pp.700 - 716. ⟨10.1111/tra.12164⟩. ⟨hal-01712232⟩
    • Nicolas Chenouard, Ihor Smal, Fabrice de Chaumont, Martin Maska, Ivo F. Sbalzarini, et al.. Objective comparison of particle tracking methods. Nature Methods, Nature Publishing Group, 2014, 11 (3), pp.281-289. ⟨10.1038/nmeth.2808⟩. ⟨hal-00932869⟩
    • Jérôme Boulanger, Charles Gueudry, Daniel Münch, Bertrand Cinquin, Perrine Paul-Gilloteaux, et al.. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (48), pp.17164-9. ⟨hal-01133826⟩
    • Carine Rossé, Catalina Lodillinsky, Laetitia Fuhrmann, Maya Nourieh, Pedro Monteiro, et al.. Control of MT1-MMP transport by atypical PKC during breast-cancer progression. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111 (18), pp.E1872 - E1879. ⟨10.1073/pnas.1400749111⟩. ⟨hal-01712228⟩
    • Jérôme Boulanger, Charles Gueudry, Daniel Münch, Bertrand Cinquin, Perrine Paul-Gilloteaux, et al.. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2014, 111, pp.17164 - 17169. ⟨10.1073/pnas.1414106111⟩. ⟨hal-01712220⟩
    • Véronique Marthiens, Maria Rujano, Carole Pennetier, Sarah Tessier, Perrine Paul-Gilloteaux, et al.. Centrosome amplification causes microcephaly. Nature Cell Biology, Nature Publishing Group, 2013, 15 (7), pp.731 - 740. ⟨10.1038/ncb2746⟩. ⟨hal-01712239⟩
    • Pedro Monteiro, Carine Rossé, Antonio Castro-Castro, Marie Irondelle, Emilie Lagoutte, et al.. Endosomal WASH and exocyst complexes control exocytosis of MT1-MMP at invadopodia. Journal of Cell Biology, Rockefeller University Press, 2013, 203 (6), pp.1063 - 1079. ⟨10.1083/jcb.201306162⟩. ⟨hal-01712237⟩
    • Yuli Watanabe, Florence Broders-Bondon, Viviane Baral, Perrine Paul-Gilloteaux, Veronique Pingault, et al.. Sox10 and Itgb1 interaction in enteric neural crest cell migration. Developmental Biology, Elsevier, 2013, 379 (1), pp.92 - 106. ⟨10.1016/j.ydbio.2013.04.013⟩. ⟨hal-01712242⟩
    • Mohamed Husain, Thomas Boudier, Perrine Paul-Gilloteaux, Ignacio Casuso, Simon Scheuring. Software for drift compensation, particle tracking and particle analysis of high-speed atomic force microscopy image series †. Journal of Molecular Recognition, Wiley, 2012, 25 ((5)), pp.292-8. ⟨10.1002/jmr.2187⟩. ⟨inserm-01363229⟩
    • Florence Broders-Bondon, Perrine Paul-Gilloteaux, Camille Carlier, Glenn Radice, Sylvie Dufour. N-cadherin and β1-integrins cooperate during the development of the enteric nervous system. Developmental Biology, Elsevier, 2012, 364 (2), pp.178 - 191. ⟨10.1016/j.ydbio.2012.02.001⟩. ⟨hal-01712255⟩
    • Ignacio Casuso, Jonathan Khao, Mohamed Chami, Perrine Paul-Gilloteaux, Mohamed Husain, et al.. Characterization of the motion of membrane proteins using high-speed atomic force microscopy. Nature Nanotechnology, Nature Publishing Group, 2012, pp.525-529. ⟨10.1038/nnano.2012.109⟩. ⟨inserm-01363192⟩
    • Paolo Maiuri, Emmanuel Terriac, Perrine Paul-Gilloteaux, Timothée Vignaud, Krista Mcnally, et al.. The first World Cell Race.. Current Biology - CB, Elsevier, 2012, 22 (17), pp.R673-5. ⟨10.1016/j.cub.2012.07.052⟩. ⟨hal-00744751⟩
    • Antonio Castro-Castro, Carsten Janke, Guillaume Montagnac, Perrine Paul-Gilloteaux, Philippe Chavrier. ATAT1/MEC-17 acetyltransferase and HDAC6 deacetylase control a balance of acetylation of alpha-tubulin and cortactin and regulate MT1-MMP trafficking and breast tumor cell invasion. European Journal of Cell Biology, Elsevier, 2012, 91 (11-12), pp.950 - 960. ⟨10.1016/j.ejcb.2012.07.001⟩. ⟨hal-01712252⟩
    • Perrine Paul, Xavier Morandi, Pierre Jannin. A surface registration method for quantification of intraoperative brain deformations in image-guided neurosurgery.. IEEE Transactions on Information Technology in Biomedicine, Institute of Electrical and Electronics Engineers, 2009, 13 (6), pp.976-83. ⟨10.1109/TITB.2009.2025373⟩. ⟨inserm-00546498⟩
    • Perrine Paul, Oliver Fleig, Pierre Jannin. Augmented virtuality based on stereoscopic reconstruction in multimodal image-guided neurosurgery: methods and performance evaluation.: Augmented Virtuality Based on Stereoscopic Reconstruction in Multimodal Image-Guided Neurosurgery: Methods and Performance Evaluation. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2005, 24 (11), pp.1500-11. ⟨10.1109/TMI.2005.857029⟩. ⟨inserm-00136469⟩

    Conference papers9 documents

    • Sébastien Levilly, Jérôme Idier, Félicien Bonnefoy, David Le Touzé, Perrine Paul-Gilloteaux, et al.. Filtrage spatio-temporel en IRM de flux sanguin 4D. Actes du XXVIème colloque GRETSI sur le Traitement du Signal et des Images, Sep 2017, Juan-Les-Pins, France. ⟨hal-01720339⟩
    • Denis Fortun, Chen Chen, Perrine Paul-Gilloteaux, François Waharte, Jean Salamero, et al.. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. European Light Microscopy Initiative (ELMI'13), May 2013, Arcachon, France. ⟨hal-00931593⟩
    • Solene Ozere, Patrick Bouthemy, Fabien Spindler, Perrine Paul-Gilloteaux, Charles Kervrann. Robust parametric stabilization of moving cells with intensity correction in light microscopy image sequences. ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.468-471, ⟨10.1109/ISBI.2013.6556513⟩. ⟨hal-00931371⟩
    • Denis Fortun, Patrick Bouthemy, Perrine Paul-Gilloteaux, Charles Kervrann. Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging. ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.660-663, ⟨10.1109/ISBI.2013.6556561⟩. ⟨hal-00931377⟩
    • Denis Fortun, Chen Chen, Perrine Paul-Gilloteaux, François Waharte, Jean Salamero, et al.. Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging. EUSIPCO 2013 - European Signal Processing Conference, Sep 2013, Marrakech, Morocco. pp.1-5. ⟨hal-00931408⟩
    • Christian Barillot, Pierrick Coupé, Bernard Gibaud, Pierre Hellier, Pierre Jannin, et al.. Image Guidance in neurosurgical procedures, the "VISAGES" point of view. Apr 2007, pp.1056-1059, ⟨10.1109/ISBI.2007.357037⟩. ⟨inserm-00152147⟩
    • Perrine Paul, Aurélie Quere, Elise Arnaud, Xavier Morandi, Pierre Jannin. A surface registration approach for video-based analysis of intraoperative brain surface deformations. Oct 2006, pp.0. ⟨inserm-00109455⟩
    • Perrine Paul, Xavier Morandi, Pierre Jannin, Julien Cohen-Adad. Knowledge modeling in image guided neurosurgery: application in understanding intra-operative brain shift. SPIE Medical Imaging 2006: Visualization, Image-Guided Procedures and Display, Mar 2006, San Diego, United States. ⟨10.1117/12.655752⟩. ⟨inserm-00147527⟩
    • Perrine Paul, Oliver Fleig, Xavier Morandi, Pierre Jannin. Virtualité augmentée en neurochirurgie guidée par l'image. 2005, pp.99-104. ⟨inserm-00138138⟩

    Poster communications3 documents

    • Marine Malloci, Stéphanie Blandin, Paul Dorval, Philippe Hulin, Pierre-Alix Dancer, et al.. Analyse d’un échantillon en 3 dimensions par une technique de Serial Block Face Imaging amovible. AFH 2019, Jun 2019, Strasbourg, France. ⟨hal-02267585⟩
    • Matúš Kalaš, Laure Plantard, Nataša Sladoje, Joakim Lindblad, Moritz Kirschmann, et al.. EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats. NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨hal-02267597⟩
    • Sébastien Levilly, Jérôme Idier, David Le Touzé, Perrine Paul-Gilloteaux, Félicien Bonnefoy, et al.. Spatio-temporal filtering of blood flow in 4D Phase-Contrast MRI. Society for Magnetic Resonance Angiography, 29th Annual International Conference (SMRA 2017), Oct 2017, Stellenbosch, South Africa. ⟨hal-01720378⟩

    Book sections1 document

    • Perrine Paul-Gilloteaux, François Waharte, Manish Kumar Singh, Maria Carla Parrini. A Biologist-Friendly Method to Analyze Cross-Correlation Between Protrusion Dynamics and Membrane Recruitment of Actin Regulators. Methods Mol Biol, pp.279-289, 2018. ⟨hal-02267604⟩

    Preprints, Working Papers, ...1 document

    • Ulysse Rubens°, Romain Mormont°, Volker Baecker, Gino Michiels, Lassi Paavolainen, et al.. BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows. 2019. ⟨hal-02267577⟩