Mehdi Mirzapour, Amine Abdaoui, Andon Tchechmedjiev, William Digan, Sandra Bringay, et al.. French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes. Journal of Biomedical Informatics, Elsevier, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩. ⟨hal-03184001⟩

Caterina Caracciolo, Sophie Aubin, Clement Jonquet, Emna Amdouni, Romain David, et al.. 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition. CODATA Data Science Journal, Committee on Data for Science and Technology (CODATA), 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩. ⟨hal-03059376⟩

Romain David, Laurence Mabile, Alison Specht, Sarah Stryeck, Mogens Thomsen, et al.. FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles. CODATA Data Science Journal, Committee on Data for Science and Technology (CODATA), 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩. ⟨hal-02483307v2⟩

Pierre Monnin, Joël Legrand, Graziella Husson, Patrice Ringot, Andon Tchechmedjiev, et al.. PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. BMC Bioinformatics, BioMed Central, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩. ⟨hal-02103899⟩

Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Stella Zevio, Clement Jonquet. SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes. BMC Bioinformatics, BioMed Central, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩. ⟨lirmm-01934127⟩

Lisa Harper, Jacqueline Campbell, Ethalinda K S Cannon, Sook Jung, Monica Poelchau, et al.. AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database -Weston-, Online Inc., 2018, 2018, pp.#bay088. ⟨10.1093/database/bay088⟩. ⟨lirmm-01964769⟩

Juan Antonio A Lossio-Ventura, Jiang Bian, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. A novel framework for biomedical entity sense induction. Journal of Biomedical Informatics, Elsevier, 2018, 84, pp.31-41. ⟨10.1016/j.jbi.2018.06.007⟩. ⟨lirmm-01851988v2⟩

Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Soumia Melzi, Jitendra Jonnagaddala, et al.. Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+. Bioinformatics, Oxford University Press (OUP), 2018, 34 (11), pp.1962-1965. ⟨10.1093/bioinformatics/bty009⟩. ⟨lirmm-01680514⟩

Philippe Lemoisson, Guillaume Surroca, Clement Jonquet, Stefano A. Cerri. ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph. International Journal of Knowledge and Learning, Inderscience, 2018, 12 (2), ⟨10.1504/IJKL.2017.10012219⟩. ⟨lirmm-01605411⟩

Clement Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzale yeumo, et al.. AgroPortal: A vocabulary and ontology repository for agronomy. Computers and Electronics in Agriculture, Elsevier, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩. ⟨lirmm-01679502⟩

Aravind Venkatesan, Gildas Tagny Ngompe, Nordine El Hassouni, Imène Chentli, Valentin Guignon, et al.. Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy. PLoS ONE, Public Library of Science, 2018, 13 (11), pp.e0198270. ⟨10.1371/journal.pone.0198270⟩. ⟨lirmm-01964772⟩

Amina Annane, Zohra Bellahsene, Faical Azouaou, Clement Jonquet. Building an effective and efficient background knowledge resource to enhance ontology matching. Journal of Web Semantics, Elsevier, 2018, 51, pp.51-68. ⟨10.1016/j.websem.2018.04.001⟩. ⟨hal-01809627v2⟩

Clement Jonquet, Anne Toulet, Biswanath Dutta, Vincent Emonet. Harnessing the power of unified metadata in an ontology repository: the case of AgroPortal. Journal on Data Semantics, Springer, 2018, pp.1-31. ⟨10.1007/s13740-018-0091-5⟩. ⟨lirmm-01852080v2⟩

Marcos Martínez-Romero, Clement Jonquet, Martin J. O’connor, John Graybeal, Alejandro Pazos, et al.. NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Journal of Biomedical Semantics, BioMed Central, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩. ⟨lirmm-01598848⟩

Esther Dzale yeumo, Michaël Alaux, Elizabeth Arnaud, Sophie Aubin, Ute Baumann, et al.. Developing data interoperability using standards: A wheat community use case. F1000Research, Faculty of 1000, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩. ⟨lirmm-01652022v2⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Biomedical term extraction: overview and a new methodology. Information Retrieval Journal, Springer, 2016, Medical Information Retrieval, 19 (1), pp.59-99. ⟨10.1007/s10791-015-9262-2⟩. ⟨lirmm-01274539⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Towards a mixed approach to extract biomedical terms from text corpus. International journal of Knowledge Discovery in Bioinformatics, IGI Global, 2014, 4 (1), pp.1-15. ⟨10.4018/ijkdb.2014010101⟩. ⟨lirmm-00859846v2⟩

Clement Jonquet, Paea Lependu, Sean Falconer, Adrien Coulet, Natalya F. Noy, et al.. NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Journal of Web Semantics, Elsevier, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩. ⟨lirmm-00622155v2⟩

William A. Baumgartner Jr, Christophe Roeder, Clement Jonquet, Nigam H. Shah, William A Baumgartner, et al.. A UIMA Wrapper for the NCBO Annotator. Bioinformatics, Oxford University Press (OUP), 2010, 26 (14), pp.1800-1801. ⟨10.1093/bioinformatics/btq250⟩. ⟨hal-00504107v2⟩

Clement Jonquet, Mark A. Musen, Nigam H. Shah. Building a Biomedical Ontology Recommender Web Service. Journal of Biomedical Semantics, BioMed Central, 2010, 1 (S1), pp.29. ⟨10.1186/2041-1480-1-S1-S1⟩. ⟨hal-00489093v2⟩

Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, et al.. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research, Oxford University Press, 2009, 37, pp.170-173. ⟨10.1093/nar/gkp440⟩. ⟨hal-00492020v2⟩

Nigam Shah, Nipun Bhatia, Clement Jonquet, Daniel L. Rubin, Annie P. Chiang, et al.. Comparison of concept recognizers for building the Open Biomedical Annotator. BMC Bioinformatics, BioMed Central, 2009, 10 (9:S14), pp.9:S14. ⟨10.1186/1471-2105-10-S9-S14⟩. ⟨hal-00492026⟩

Nigam H. Shah, Clement Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, et al.. Ontology-driven Indexing of Public Datasets for Translational Bioinformatics. BMC Bioinformatics, BioMed Central, 2009, 10 (2:S1), pp.1-10. ⟨10.1186/1471-2105-10-S2-S1⟩. ⟨hal-00492025v2⟩

Clement Jonquet, Pascal Dugénie, Stefano A. Cerri. Agent-Grid Integration Language. Multiagent and Grid Systems - An International Journal of Cloud Computing , IOS Press, 2008, 4 (2), pp.167-211. ⟨10.3233/MGS-2008-4203⟩. ⟨lirmm-00139691⟩

Pascal Dugénie, Philippe Lemoisson, Clement Jonquet, Monica Crubézy, Claude Lorenço. The Grid Shared Desktop: a bootstrapping environment for collaboration. Advanced Technology for Learning, ACTA Press, 2006, Special issue on Collaborative Learning, 3 (4), pp.241-249. ⟨10.2316/Journal.208.2006.4.208-0895⟩. ⟨lirmm-00128326v2⟩

Clement Jonquet, Stefano A. Cerri. The STROBE Model: Dynamic Service Generation on the Grid. Applied Artificial Intelligence, Taylor & Francis, 2005, Special issue on Learning Grid Services, 19 (9-10), pp.967-1013. ⟨10.1080/08839510500234826⟩. ⟨lirmm-00105302⟩

Emna Amdouni, Syphax Bouazzouni, Clement Jonquet. O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal semantic resource repository. ESWC 2022 - 19th Extended Semantic Web Conference, Poster and demonstration., May 2022, Hersonissos, Greece. ⟨lirmm-03630543v3⟩

Baptiste Darnala, Florence Amardeilh, Catherine Roussey, Konstantin Todorov, Clement Jonquet. Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages. 1st Workshop on Modular Knowledge, Loris Bozzato, Valentina Anita Carriero, Torsten Hahmann, Antoine Zimmermann, May 2022, Hersonissos, Greece. ⟨hal-03679652⟩

Emna Amdouni, Clement Jonquet. Une méthodologie et un outil d'évaluation du niveau de " FAIRness " pour les ressources sémantiques : le cas d'AgroPortal. IC 2021 - Jourrnées francophones d’Ingénierie des Connaissances, Plate-Forme Intelligence Artificielle (PFIA'21), Jun 2021, Bordeaux, France. pp.11-19. ⟨lirmm-03232615⟩

Syphax Bouazzouni, Clement Jonquet. L’ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France.. Journées Francophones d'Ingénierie des Connaissances (IC) Plate-Forme Intelligence Artificielle (PFIA'21), Jun 2021, Bordeaux, France. pp.105-112. ⟨emse-03260693⟩

Baptiste Darnala, Florence Amardeilh, Catherine Roussey, Clement Jonquet. Crop Planning and Production Process Ontology (C3PO), a new model to assist diversified crop production. Integrated Food Ontology Workshop (IFOW’21) at the 12th International Conference on Biomedical Ontologies (ICBO), Sep 2021, Bolzano, Italy. ⟨lirmm-03389513⟩

Catherine Roussey, Xavier Delpuech, Marc Raynal, Florence Amardeilh, Stéphan Bernard, et al.. Description sémantique des stades de développement phénologique des plantes, cas d’étude de la vigne. 32èmes Journées Francophones d'Ingénierie des Connaissances (IC) Plate-Forme Intelligence Artificielle (PFIA'21), Jun 2021, Bordeaux, France. pp.30-38. ⟨emse-03260085⟩

Emna Amdouni, Clement Jonquet. FAIR or FAIRer? An integrated quantitative FAIRness assessment grid for semantic resources and ontologies. MTSR 2021 - 15th International Conference on Metadata and Semantics Research, Nov 2021, Madrid, Spain. pp.67-80, ⟨10.1007/978-3-030-98876-0_6⟩. ⟨lirmm-03208544v3⟩

Catherine Roussey, Xavier Delpuech, Florence Amardeilh, Stephan Bernard, Clement Jonquet. Semantic Description of Plant Phenological Development Stages, starting with Grapevine. MTSR 2020 - 14th International Conference on Metadata and Semantics Research, Dec 2020, Madrid, Spain. pp.257-268, ⟨10.1007/978-3-030-71903-6_25⟩. ⟨hal-02996846⟩

Amir Laadhar, Elcio Abrahão, Clement Jonquet. Investigating One Million XRefs in Thirthy Ontologies from the OBO World. ICBO 2020 - 11th International Conference on Biomedical Ontologies, Sep 2020, Bozen-Bolzano, Italy. pp.G.1-12. ⟨lirmm-02945170⟩

Amir Laadhar, Elcio Abrahão, Clement Jonquet. Analysis of Term Reuse, Term Overlap and Extracted Mappings across AgroPortal Semantic Resources. EKAW 2020 - 22nd International Conference on Knowledge Engineering and Knowledge Management, Sep 2020, Bozen-Bolzano, Italy. pp.71-87, ⟨10.1007/978-3-030-61244-3_5⟩. ⟨lirmm-02945172⟩

Sophie Aubin, Pierre Bisquert, Patrice Buche, Juliette Dibie-Barthelemy, Liliana L. Ibanescu, et al.. Recent progresses in data and knowledge integration for decision support in agri-food chains. IC 2019 - 30es Journées francophones d'Ingénierie des Connaissances, AFIA, Jul 2019, Toulouse, France. pp.43-59. ⟨hal-02284538⟩

Fabienne Kettani, Stéphane Schneider, Sophie Aubin, Robert Bossy, Claire François, et al.. Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français. IC: Ingénierie des Connaissances, Jul 2018, Nancy, France. pp.247-249. ⟨hal-01839626v2⟩

Clement Jonquet. Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux. SemWeb.Pro, Nov 2018, Paris, France. ⟨lirmm-01852073v2⟩

Andon Tchechmedjiev, Amine Abdaoui, Vincent Emonet, Clement Jonquet. ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017. CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland. ⟨lirmm-01605359⟩

Andon Tchechmedjiev, Clement Jonquet. Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation. LOTKS: Language, Ontology, Terminology and Knowledge Structures, Sep 2017, Montpellier, France. ⟨lirmm-01605517v2⟩

Biswanath Dutta, Anne Toulet, Vincent Emonet, Clement Jonquet. New Generation Metadata vocabulary for Ontology Description and Publication. MTSR 2017 - 11th International Conference on Metadata and Semantics Research, Nov 2017, Tallinn, Estonia. pp.173-185, ⟨10.1007/978-3-319-70863-8_17⟩. ⟨lirmm-01605783⟩

Philippe Lemoisson, Guillaume Surroca, Clement Jonquet, Stefano A. Cerri. ViewpointS: When Social Ranking Meets the Semantic Web. FLAIRS: Florida Artificial Intelligence Research Society, May 2017, Marco Island, FL, United States. pp.329-334. ⟨lirmm-01598842⟩

Amine Abdaoui, Andon Tchechmedjiev, William Digan, Sandra Bringay, Clement Jonquet. French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français. SIIM 2017 - 4ème Symposium sur l'Ingénierie de l'Information Médicale, Nov 2017, Toulouse, France. ⟨lirmm-01656834⟩

Clement Jonquet. Challenges for ontology repositories and applications to biomedicine & agronomy. SIMBig: Symposium on Information Management and Big Data, Sep 2017, Lima, Peru. pp.25-37. ⟨lirmm-01679500⟩

Pierre Monnin, Clement Jonquet, Joël Legrand, Amedeo Napoli, Adrien Coulet. PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units. Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩. ⟨hal-01593184v2⟩

Clement Jonquet, Anne Toulet, Vincent Emonet. Two years later: the landscape of vocabularies and ontologies in the AgroPortal. IN-OVIVE, Jul 2017, Montpellier, France. ⟨lirmm-01598852⟩

Clement Jonquet, Amina Annane, Khedidja Bouarech, Vincent Emonet, Soumia Melzi. SIFR BioPortal : Un portail ouvert et générique d’ontologies et de terminologies biomédicales françaises au service de l’annotation sémantique. JFIM: Journées Francophones d'Informatique Médicale, Jun 2016, Genève, Suisse. ⟨hal-01398250⟩

Anne Toulet, Vincent Emonet, Clement Jonquet. Modèle de métadonnées dans un portail d'ontologies. JFO: Journées Francophones sur les Ontologies, Oct 2016, Bordeaux, France. ⟨lirmm-01397388⟩

Solène Eholié, Mike Donald Tapi Nzali, Sandra Bringay, Clement Jonquet. MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands. ⟨hal-01398253⟩

Amina Annane, Vincent Emonet, Faiçal Azouaou, Clement Jonquet. Multilingual Mapping Reconciliation between English-French Biomedical Ontologies. WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912847⟩. ⟨lirmm-01395880⟩

Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet. Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching. EKAW: Knowledge Engineering and Knowledge Management, Nov 2016, Bologne, Italy. pp.19-33, ⟨10.1007/978-3-319-49004-5_2⟩. ⟨lirmm-01395883⟩

Solène Eholié, Mike Donald Tapi Nzali, Sandra Bringay, Clement Jonquet. MuEVo, un vocabulaire multi-expertise (patient/médecin) dédié au cancer du sein. IC: Ingénierie des Connaissances, Jun 2016, Montpellier, France. ⟨hal-01379272⟩

Clement Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé-yeumo, et al.. Reusing the NCBO BioPortal technology for agronomy to build AgroPortal. ICBO: International Conference on Biomedical Ontologies, Aug 2016, Corvallis, OR, United States. ⟨hal-01398251⟩

Guillaume Surroca, Philippe Lemoisson, Stefano A. Cerri, Clement Jonquet. Subjective and generic distance in ViewpointS: an experiment on WordNet. WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912870⟩. ⟨lirmm-01397993⟩

Amina Annane, Vincent Emonet, Faiçal Azouaou, Clement Jonquet. Réconciliation d'alignements multilingues dans BioPortal. IC: Ingénierie des Connaissances, Jun 2016, Montpellier, France. ⟨lirmm-01395900⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Prédiction de la polysémie pour un terme biomédical. 12ième Conférence francophone en Recherche d'Information et Applications (CORIA), Mar 2015, Paris, France. pp.437-452. ⟨lirmm-01132654⟩

Guillaume Surroca, Philippe Lemoisson, Clement Jonquet, Stefano A. Cerri. Preference Dissemination by Sharing Viewpoints: Simulating Serendipity. IC3K: Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov 2015, Lisbon, Portugal. pp.402-409, ⟨10.5220/0005636204020409⟩. ⟨lirmm-01223078⟩

Guillaume Surroca, Philippe Lemoisson, Clement Jonquet, Stefano A. Cerri. Diffusion de systèmes de préférences par confrontation de points de vue, vers une simulation de la Sérendipité. IC: Ingénierie des Connaissances, INRIA, AFIA, Jul 2015, Rennes, France. ⟨lirmm-01172223⟩

Clement Jonquet, Esther Dzalé-yeumo, Elizabeth Arnaud, Pierre Larmande. AgroPortal : a proposition for ontology-based services in the agronomic domain. IN-OVIVE, Jun 2015, Rennes, France. ⟨lirmm-01172232⟩

Clement Jonquet, Vincent Emonet, Mark A. Musen. Roadmap for a multilingual BioPortal. MSW: Multilingual Semantic Web, Jun 2015, Portoroz, Slovenia. ⟨lirmm-01172218⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. SIFR Project: The Semantic Indexing of French Biomedical Data Resources. SIMBig: Symposium on Information Management and Big Data, Juan Antonio Lossio-Ventura; Hugo Alatrista-Salas, Sep 2014, Cusco, Peru. pp.58-61. ⟨lirmm-01112901⟩

Clement Jonquet, Mark A. Musen. Gestion du multilinguisme dans un portail d’ontologies: étude de cas pour le NCBO BioPortal. TOTh Workshop, Dec 2014, Bruxelles, Belgique. ⟨lirmm-01099882⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Yet Another Ranking Function for Automatic Multiword Term Extraction. 9th International Conference on Natural Language Processing (PolTAL), Sep 2014, Warsaw, Poland. pp.52-64, ⟨10.1007/978-3-319-10888-9_6⟩. ⟨lirmm-01068556⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation. ISWC: International Semantic Web Conference, Oct 2014, Riva del Garda, Italy. pp.157-160. ⟨lirmm-01112894⟩

Clement Jonquet, Christophe Fiorio, Philippe Papet, Stéphanie Belin-Mejean, Claudine Pastor, et al.. REX:Innovation pédagogique via l'utilisation de tablettes numériques à Polytech Montpellier. TICE: Technologies de l'Information et de la Communication pour l'Enseignement, Nov 2014, Béziers, France. pp.97-106. ⟨lirmm-01118757⟩

Guillaume Surroca, Philippe Lemoisson, Clement Jonquet, Stefano A. Cerri. Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique. IC: Ingénierie des Connaissances, May 2014, Clermont-Ferrand, France. pp.175-186. ⟨lirmm-00995948⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Integration of Linguistic and Web Information to Improve Biomedical Terminology Extraction. IDEAS: International Database Engineering & Applications Symposium, Jul 2014, Porto, Portugal. pp.265-269, ⟨10.1145/2628194.2628208⟩. ⟨lirmm-01068547v2⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Biomedical Terminology Extraction: A new combination of Statistical and Web Mining Approaches. JADT: Journées d'Analyse statistique des Données Textuelles, Jun 2014, Paris, France. pp.421-432. ⟨lirmm-01056598v2⟩

Soumia Melzi, Clement Jonquet. Scoring semantic annotations returned by the NCBO Annotator. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany. ⟨lirmm-01099860⟩

Julien Grosjean, Lina F. Soualmia, Khedidja Bouarech, Clement Jonquet, Stefan J. Darmoni. Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal?. IWBBIO: International Work-Conference on Bioinformatics and Biomedical Engineering, Apr 2014, Granada, Spain. ⟨lirmm-01052583⟩

Julien Grosjean, Lina F. Soualmia, Khedidja Bouarech, Clement Jonquet, Stefan J. Darmoni. An Approach to Compare Bio-Ontologies Portals. MIE: Medical Informatics European, Aug 2014, Istanbul, Turkey. ⟨lirmm-01052549⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Extraction automatique de termes combinant différentes informations. TALN: Traitement Automatique des Langues Naturelles, Jul 2014, Marseille, France. pp.407-412. ⟨lirmm-01020051⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. Combining C-value and Keyword Extraction Methods for Biomedical Terms Extraction. LBM: Languages in Biology and Medicine, Dec 2013, Tokyo, Japan. ⟨lirmm-01019991⟩

Madalina Croitoru, Stéphane Bazan, Stefano A. Cerri, Hugh C. Davis, Raffaella Folgieri, et al.. Negotiating the Web Science Curriculum through Shared Educational Artefacts. WebSci'11: 3rd International Conference on Web Science, Jun 2011, Koblenz, Germany. pp.14-17. ⟨lirmm-00652085⟩

Gautam K. Parai, Clement Jonquet, Rong Xu, Mark A. Musen, Nigam H. Shah. The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. American Medical Informatics Association Annual Symposium, AMIA'10, Nov 2010, Washington, DC, United States. pp.6. ⟨hal-00558033⟩

Paea Lependu, Natalya F. Noy, Clement Jonquet, Paul R. Alexander, Nigam H. Shah, et al.. Optimize First, Buy Later: Analyzing Metrics to Ramp-up Very Large Knowledge Bases. 9th International Semantic Web Conference, ISWC'10, Nov 2010, Shangai, China. pp.486-501. ⟨hal-00558036⟩

Clement Jonquet, Adrien Coulet, Nigam Shah, Mark A. Musen. Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical. 21èmes Journées Francophones d'Ingénierie des Connaissances, Jun 2010, Nimes, France. pp.271-282. ⟨hal-00488419⟩

Clement Jonquet, Paea Lependu, Sean M. Falconer, Adrien Coulet, Natalya F. Noy, et al.. NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Semantic Web Challenge, 9th International Semantic Web Conference, ISWC'10, Nov 2010, Shangai, China. pp.8. ⟨hal-00557982⟩

Amir Ghazvinian, Natasha F. Noy, Clement Jonquet, Nigam H. Shah, Mark A. Musen. What Four Million Mappings Can Tell You about Two Hundred Ontologies. 8th International Semantic Web Conference, ISWC'09, Oct 2009, Washington DC, United States. pp.229-242. ⟨hal-00489094⟩

Clement Jonquet, Nigam Shah, Mark A. Musen. Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies. 13èmes Journées Francophones d'Informatique Médicale, JFIM'09, Apr 2009, Nice, France, France. pp.12. ⟨hal-00492022⟩

Clement Jonquet, Nigam Shah, Mark A. Musen. The Open Biomedical Annotator. AMIA Summit on Translational Bioinformatics, Mar 2009, San Francisco, CA, United States. pp.56-60. ⟨hal-00492024⟩

Clement Jonquet, Pascal Dugénie, Stefano A. Cerri. Service-Based Integration of Grid and Multi-Agent Systems Models. International Workshop on Service-Oriented Computing: Agents, Semantics, and Engineering, SOCASE'08:, May 2008, Estoril, Portugal. pp.56-68, ⟨10.1007/978-3-540-79968-9_5⟩. ⟨lirmm-00288454⟩

Clement Jonquet, Mark A. Musen, Nigam Shah. A System for Ontology-Based Annotation of Biomedical Data. International Workshop on Data Integration in The Life Sciences 2008, DILS'08, Jun 2008, Evry, France. pp.144-152. ⟨hal-00279660⟩

Pascal Dugénie, Clement Jonquet, Stefano A. Cerri. The Principle of Immanence in GRID-Multiagent Integrated Systems. AWeSOMe'08: 4th International Workshop On Agents and Web Services Merging in Distributed Environments - OTM 2008 Workshops, Nov 2008, Monterrey, Mexico. pp.98-107, ⟨10.1007/978-3-540-88875-8_29⟩. ⟨lirmm-00339373⟩

Frédéric Duvert, Clement Jonquet, Pascal Dugénie, Stefano A. Cerri. Agent-Grid Integration Ontology. OTM: On the Move to Meaningful Internet Systems, Oct 2006, Montpellier, France. pp.136-146, ⟨10.1007/11915034_36⟩. ⟨lirmm-00110569⟩

Clement Jonquet, Stefano A. Cerri, Pascal Dugénie. Intégration orientée service des modèles Grid et Multi-Agents. 14èmes Journées Francophones sur les Systèmes Multi-Agents, JFSMA'06, Oct 2006, Annecy, France. pp.271-274. ⟨lirmm-00107500⟩

Stefano A. Cerri, Monica Crubézy, Pascal Dugénie, Clement Jonquet, Philippe Lemoisson. The Grid Shared Desktop for CSCL. eChallenges 2006 Conference, Oct 2006, Barcelona, Spain, pp.1493-1499. ⟨lirmm-00128314⟩

Clement Jonquet, Stefano A. Cerri. I-Dialogue: Modelling Agent Conversation by Streams and Lazy Evaluation. International Lisp Conference, ILC'05, Jun 2005, Stanford University, United States. pp.1. ⟨hal-00250148⟩

Clement Jonquet, Stefano A. Cerri. Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication. RFIA: Reconnaissance des Formes et Intelligence Artificielle, AFRIF-AFIA, Jan 2004, Toulouse, France. pp.779-788. ⟨hal-00250149⟩

Clement Jonquet, Stefano A. Cerri. Agents Communicating for Dynamic Service Generation. GLS'04: 1st Workshop on GRID Learning Services at ITS'04, Aug 2004, Maceio, Brazil. pp.39-53. ⟨lirmm-00108792⟩

Stefano A. Cerri, Marc Eisenstadt, Clement Jonquet. Dynamic Learning Agents and Enhanced Presence on the Grid. 3rd International Workshop on GRID Infrastructure to Support Future Technology Enhanced Learning (LeGE-WG), Dec 2003, Berlin, Germany. ⟨lirmm-00269487⟩

Clement Jonquet, Stefano A. Cerri. Cognitive Agents Learning by Communicating. ALCAA: Agents Logiciels - Coopération - Apprentissage - Activités Humaines, Sep 2003, Bayonne, France. ⟨lirmm-00191962⟩

Clement Jonquet, Stefano A. Cerri. Apprentissage Issu de la Communication pour des Agents Cognitifs. Journées Francophones sur les Systèmes Multi-Agents (JFSMA), 2003, Hammamet, Tunisie. pp.83-87. ⟨lirmm-00191963⟩

John Graybeal, Clement Jonquet, Nicola Fiore, Mark A. Musen. Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community. RDA P13 2019 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States. ⟨lirmm-02360625⟩

Sophie Aubin, Anne-Francoise Adam-Blondon, Michael Alaux, Mouhamadou Ba, Stéphan Bernard, et al.. D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity. RDA P14 2019 - 14th Research Data Alliance Plenary Conference, Oct 2019, Helsinki, Finland. 2019, ⟨10.5281/zenodo.3520300⟩. ⟨lirmm-02351000⟩

Clement Jonquet. AgroPortal: an ontology repository for agronomy. EFITA WCCA CONGRESS, Jul 2017, Montpellier, France. 11th European Conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector, with World Congress on Computers in Agriculture demonstration session, 2017, demonstration session. ⟨lirmm-01598854v2⟩

Clement Jonquet. The Agronomic Linked Data (AgroLD) project. EFITA WCCA CONGRESS, Jul 2017, Montpellier, France. 11th European Conference dedicated to the future use of ICT in the agri-food sector, bioresource and biomass sector, with World Congress on Computers in Agriculture, 2017, demonstration session. ⟨lirmm-01598856⟩

Clement Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé yeumo, et al.. AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data. Ben Schaap. GODAN Summit, Sep 2016, New York, NY, United States. GODAN Summit is an Open Data Research Symposium on Agriculture and Nutrition, 2016. ⟨hal-01398252⟩

Juan Antonio Lossio-Ventura, Clement Jonquet, Mathieu Roche, Maguelonne Teisseire. A Way to Automatically Enrich Biomedical Ontologies. Pitoura Evaggelia; Maabout Sofian; Koutrika Georgia; Marian Amelie; Tanca Letizia; Manolescu Ioana; Stefanidis Kostas. EDBT 2016 - 19th International Conference on Extending Database Technology, Mar 2016, Bordeaux, France. OpenProceedings.org, Advances in Database Technology - EDBT 2016, 19th International Conference on Extending Database Technology, Bordeaux, France, March 15-16, Proceedings, pp.676-677, 2016, ⟨10.5441/002/edbt.2016.82⟩. ⟨hal-01274540⟩

Clement Jonquet, Esther Dzalé-yeumo, Elizabeth Arnaud, Pierre Larmande, Anne Toulet, et al.. AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain. PAG: Plant & Animal Genome, Jan 2016, San Diego, United States. International Plant & Animal Genome XXIV, 2016, Systems Biology and Ontologies, Poster session. ⟨lirmm-01397465⟩

Aravind Venkatesan, Pierre Larmande, Clement Jonquet, Manuel Ruiz, Patrick Valduriez. Facilitating efficient knowledge management and discovery in the Agronomic Sciences. RDA: Research Data Alliance, Sep 2014, Amsterdam, Netherlands. 4th Plenary Meeting of the Research Data Alliance, 2014. ⟨lirmm-01071822⟩

Clement Jonquet, Christophe Fiorio, Philippe Papet, Stéphanie Belin-Mejean, Cellule Ipad Des Enseignants de Polytech Montpellier. Scénarios pédagogiques numériques via l'utilisation de l'iPad par et pour les étudiants de Polytech Montpellier. Karsenti, T. SOMMET iPad en éducation, May 2014, Montreal, Canada. 2ème Sommet iPad en éducation, 2014. ⟨lirmm-00924265⟩

Soumia Melzi, Clement Jonquet. Representing NCBO Annotator results in standard RDF with the Annotation Ontology. A. Paschke; A. Burger; P. Romano; M.S. Marshall; A. Splendiani. SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany. CEUR-WS.org, 7th International Semantic Web Applications and Tools for Life Sciences, 1320, 2014. ⟨lirmm-01099869⟩

Emmanuel Castanier, Clement Jonquet, Soumia Melzi, Pierre Larmande, Manuel Ruiz, et al.. Semantic Annotation Workflow using Bio-Ontologies. Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France. 1 p., 2014. ⟨lirmm-01052546⟩

Patricia L. Whetzel, Nigam H. Shah, Natalya Noy, Clement Jonquet, Adrien Coulet, et al.. Ontology-based Web Services for Data Annotation and Integration. ISMB: Intelligent Systems for Molecular Biology, Jul 2010, Boston, United States. 18th International Conference on Intelligent Systems for Molecular Biology, 2010. ⟨lirmm-01605892⟩

Pascal Neveu, Romain David, Clement Jonquet. Improving data identification and tagging for more effective decision making in agriculture. Leisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2. ⟨hal-02164149⟩

Clement Jonquet. Semantic Indexing of French Biomedical Data Resources. Project Repository Journal, 3, pp.16-19, 2019. ⟨lirmm-02360615⟩

Clement Jonquet, Marc Eisenstadt, Stefano A. Cerri. Learning Agents and Enhanced Presence for Generation of Services on the Grid. Towards the Learning GRID: Advances in Human Learning Services, 127, IOS Press, pp.203-213, 2005, Frontiers in Artificial Intelligence and Applications, 978-1-58603-534-1 (print) 978-1-60750-123-7 (online). ⟨lirmm-00106610⟩

Alsayed Algergawy, Naouel Karam, Friederike Klan, Clement Jonquet. Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017). S4BioDiv: International Workshop on Semantics for Biodiversity, Oct 2017, Vienna, Australia. Ceur-1933, CEUR, 2017. ⟨lirmm-01605671⟩

Claude Frasson, Jean-Marc Labat, Fabien Gandon, David Cassagne, Clement Jonquet, et al.. Actes de la 9ème conférence des Technologies de l’Information et de la Communication pour l’Enseignement (TICE 2014). Claude Frasson; Jean-Marc Labat; Fabien Gandon; David Cassagne; Clement Jonquet; Stefano A. Cerri; Philippe Pujas. TICE: Technologies de l’Information et de la Communication pour l’Enseignement, Nov 2014, Béziers, France. IUT Béziers, 2014. ⟨hal-01187103⟩

Pierre Larmande, Elizabeth Arnaud, Isabelle Mougenot, Clement Jonquet, Thérèse Libourel Rouge, et al.. Proceedings of the 1st International Workshop on Semantics for Biodiversity. Pierre Larmande; Elizabeth Arnaud; Isabelle Mougenot; Clement Jonquet; Thérèse Libourel; Manuel Ruiz. 1. International Workshop on Semantics for Biodiversity, May 2013, Montpellier, France. Ceur-979, pp.001-131, 2013. ⟨lirmm-00831757⟩

Amina Annane, Zohra Bellahsene, Faiçal Azouaou, Clement Jonquet. YAM-BIO – Results for OAEI 2017. 2017, pp.1-6. ⟨lirmm-01679503⟩

Emna Amdouni, Syphax Bouazzouni, Clement Jonquet. O'FAIRe makes you an offer: Metadata-based Automatic FAIRness Assessment for Ontologies and Semantic Resources. 2022. ⟨lirmm-03630233⟩

Valeria Pesce, Jeni Tennison, Lisette Mey, Clement Jonquet, Anne Toulet, et al.. A Map of Agri-food Data Standards. [Research Report] F1000 7-177, Godan. 2018. ⟨lirmm-01964791⟩

Anne Toulet, Biswanath Dutta, Clement Jonquet. Assessing the Practice of Ontology Metadata: A Survey Result. [Research Report] University of Montpellier. 2018. ⟨lirmm-02315001⟩

Sophie Aubin, Caterina Caracciolo, Panagiotis Zervas, Pascal Aventurier, Patrice Buche, et al.. Landscaping the use of semantics to enhance the interoperability of agricultural data: First deliverable of the RDA Agrisemantics Working Group. [Research Report] Research Data Alliance. 2017, pp.59. ⟨hal-02607815⟩

Clement Jonquet, Pascal Dugénie, Stefano A. Cerri. AGIL Specifications. 06030, 2006, pp.32. ⟨lirmm-00102805⟩

Clement Jonquet. Dynamic Service Generation: Agent interactions for service exchange on the Grid. Software Engineering [cs.SE]. Université Montpellier II - Sciences et Techniques du Languedoc, 2006. English. ⟨tel-00115389⟩

Clement Jonquet. Ontology Repository and Ontology-Based Services – Challenges, contributions and applications to biomedicine & agronomy. Web. Université de Montpellier, 2019. ⟨tel-02133335⟩