Documentation
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Clement Jonquet

Directeur de recherche – INRAE (MISTEA), Chercheur associé – Université de Montpellier (LIRMM)

100%

Libre accès

25

Documents

Affiliations actuelles

1100640
1096435

Identifiants chercheurs

jonquet
ResearcherId : B-2364-2012
IdRef : 076431215
0000-0002-2404-1582

Site web

http://www.lirmm.fr/~jonquet/

Publications

710444

	French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes Mehdi Mirzapour , Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay Journal of Biomedical Informatics, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩ Article dans une revue hal-03184001v1
	PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison Pierre Monnin , Joël Legrand , Graziella Husson , Patrice Ringot , Andon Tchechmedjiev BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩ Article dans une revue hal-02103899v1
	Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+ Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Soumia Melzi , Jitendra Jonnagaddala Bioinformatics, 2018, 34 (11), pp.1962-1965. ⟨10.1093/bioinformatics/bty009⟩ Article dans une revue lirmm-01680514v1
	AgroPortal: A vocabulary and ontology repository for agronomy Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzale Yeumo Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩ Article dans une revue lirmm-01679502v1
	SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Stella Zevio , Clement Jonquet BMC Bioinformatics, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩ Article dans une revue lirmm-01934127v1
	Building an effective and efficient background knowledge resource to enhance ontology matching Amina Annane , Zohra Bellahsene , Faical Azouaou , Clement Jonquet Journal of Web Semantics, 2018, 51, pp.51-68. ⟨10.1016/j.websem.2018.04.001⟩ Article dans une revue hal-01809627v2
	Harnessing the power of unified metadata in an ontology repository: the case of AgroPortal Clement Jonquet , Anne Toulet , Biswanath Dutta , Vincent Emonet Journal on Data Semantics, 2018, pp.1-31. ⟨10.1007/s13740-018-0091-5⟩ Article dans une revue lirmm-01852080v2
	NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation Marcos Martínez-Romero , Clement Jonquet , Martin J. O’connor , John Graybeal , Alejandro Pazos Journal of Biomedical Semantics, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩ Article dans une revue lirmm-01598848v1
	Developing data interoperability using standards: A wheat community use case Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩ Article dans une revue lirmm-01652022v2

	Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François IC 2018 - 29es Journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2018, Nancy, France. pp.247-249 Communication dans un congrès hal-01839626v2
	Challenges for ontology repositories and applications to biomedicine & agronomy Clement Jonquet SIMBig: Symposium on Information Management and Big Data, Sep 2017, Lima, Peru. pp.25-37 Communication dans un congrès lirmm-01679500v1
	ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017 Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Clement Jonquet CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland Communication dans un congrès lirmm-01605359v1
	Two years later: the landscape of vocabularies and ontologies in the AgroPortal Clement Jonquet , Anne Toulet , Vincent Emonet International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE 2017), Jul 2017, Montpellier, France Communication dans un congrès lirmm-01598852v1
	Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation Andon Tchechmedjiev , Clement Jonquet LOTKS: Language, Ontology, Terminology and Knowledge Structures, Sep 2017, Montpellier, France Communication dans un congrès lirmm-01605517v2
	New Generation Metadata vocabulary for Ontology Description and Publication Biswanath Dutta , Anne Toulet , Vincent Emonet , Clement Jonquet 11th International Conference on Metadata and Semantics Research (MTSR 2017), Nov 2017, Tallinn, Estonia. pp.173-185, ⟨10.1007/978-3-319-70863-8_17⟩ Communication dans un congrès lirmm-01605783v1
	PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units Pierre Monnin , Clement Jonquet , Joël Legrand , Amedeo Napoli , Adrien Coulet Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩ Communication dans un congrès hal-01593184v2
	French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay , Clement Jonquet SIIM 2017 - 4ème Symposium sur l'Ingénierie de l'Information Médicale, Nov 2017, Toulouse, France Communication dans un congrès lirmm-01656834v1
	MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands Communication dans un congrès hal-01398253v1

	Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community John Graybeal , Clement Jonquet , Nicola Fiore , Mark A. Musen RDA P13 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States. Poster de conférence lirmm-02360625v1
	Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux Clement Jonquet SemWeb.Pro, Nov 2018, Paris, France Poster de conférence lirmm-01852073v2
	AgroPortal: an ontology repository for agronomy Clement Jonquet 11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017 Poster de conférence lirmm-01598854v2

	Semantic Indexing of French Biomedical Data Resources Clement Jonquet Project Repository Journal, 3, , pp.16-19, 2019 Chapitre d'ouvrage lirmm-02360615v1

	Assessing the Practice of Ontology Metadata: A Survey Result Anne Toulet , Biswanath Dutta , Clement Jonquet [Research Report] University of Montpellier. 2018 Rapport lirmm-02315001v1
	YAM-BIO – Results for OAEI 2017 Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet University of Montpellier. 2017, pp.1-6 Rapport lirmm-01679503v1

	Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017) Alsayed Algergawy , Naouel Karam , Friederike Klan , Clement Jonquet S4BioDiv: International Workshop on Semantics for Biodiversity, Oct 2017, Vienna, Australia. Ceur-1933, CEUR, 2017 Proceedings/Recueil des communications lirmm-01605671v1