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35

List of publications - Laurent Bréhélin


Article dans une revue19 documents

  • Chloé Bessière, May Taha, Florent Petitprez, Jimmy Vandel, Jean-Michel Marin, et al.. Probing instructions for expression regulation in gene nucleotide compositions. PLoS Computational Biology, Public Library of Science, 2018, 14 (1), pp.e1005921. 〈10.1371/journal.pcbi.1005921〉. 〈lirmm-01744469〉
  • Christophe Menichelli, Olivier Gascuel, Laurent Brehelin. Improving pairwise comparison of protein sequences with domain co-occurrence. PLoS Computational Biology, Public Library of Science, 2018, 14 (1), pp.e1005889. 〈10.1371/journal.pcbi.1005889〉. 〈lirmm-01744475〉
  • Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, et al.. Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e95275. 〈10.1371/journal.pone.0095275〉. 〈pasteur-01060276〉
  • Nicolas Terrapon, Olivier Gascuel, Eric Marechal, Laurent Brehelin. Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.. BMC Bioinformatics, BioMed Central, 2012, 13 (1), pp.67. 〈10.1186/1471-2105-13-67〉. 〈hal-00701611〉
  • Mathieu Lajoie, Olivier Gascuel, Vincent Lefort, Laurent Brehelin. Computational discovery of regulatory elements in a continuous expression space. Genome Biology, BioMed Central, 2012, 13 (11), pp.41. 〈lirmm-00796453〉
  • Laurence Boudière, Cyrille Y Botté, Nadia Saidani, Mathieu Lajoie, Jessica Marion, et al.. Galvestine-1, a novel chemical probe for the study of the glycerolipid homeostasis system in plant cells.. Molecular BioSystems, Royal Society of Chemistry, 2012, 8 (8), pp.2023-35. 〈10.1039/c2mb25067e〉. 〈hal-00720135〉
  • Amel Ghouila, Nicolas Terrapon, Olivier Gascuel, Fatma Guerfali, Dhafer Laouini, et al.. EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens. Infection, Genetics and Evolution, Elsevier, 2011, 11 (4), pp.698-707. 〈10.1016/j.meegid.2010.09.008〉. 〈lirmm-00540932〉
  • Cyrille Y Botté, Michael Deligny, Aymeric Roccia, Anne-Laure Bonneau, Nadia Saïdani, et al.. Chemical inhibitors of monogalactosyldiacylglycerol synthases in Arabidopsis thaliana.. Nature Chemical Biology, Nature Publishing Group, 2011, 7 (11), pp.834-842. 〈10.1038/nchembio.658〉. 〈hal-00636525〉
  • Laurent Brehelin, Isabelle Florent, Olivier Gascuel, Eric Maréchal. Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum.. BMC Genomics, BioMed Central, 2010, 11, pp.35. 〈10.1186/1471-2164-11-35〉. 〈hal-00468687〉
  • Laurent Brehelin, Isabelle Florent, Olivier Gascuel, Eric Maréchal. Assessing Functional Annotation Transfers with Inter-Species Conserved Coexpression: Application to Plasmodium Falciparum. BMC Genomics, BioMed Central, 2010, 11 (35), pp.1471-2164. 〈10.1186/1471-2164-11-35〉. 〈lirmm-00540866〉
  • Isabelle Florent, Eric Maréchal, Olivier Gascuel, Laurent Brehelin. Bioinformatic strategies to provide functional clues to the unknown genes in Plasmodium falciparum genome. Parasite, EDP Sciences, 2010, 17, pp.273-283. 〈lirmm-00544139〉
  • Isabelle Florent, Betina M Porcel, Elodie Guillaume, Corinne Da Silva, François Artiguenave, et al.. A Plasmodium Falciparum FcB1-Schizont-EST Collection Providing Clues to Schizont Specific Gene Structure and Polymorphism. BMC Genomics, BioMed Central, 2009, 10, pp.235-252. 〈10.1186/1471-2164-10-235〉. 〈lirmm-00395282〉
  • Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Thérèse Commes, et al.. Estimation of sequence errors and capacity of genomic annotation in transcriptomic and DNA-protein interaction assays based on next generation sequencers. Cellular Oncology, IOS Press, 2009, 31 (2), pp.145-146. 〈lirmm-00416012〉
  • Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Thérèse Commes, et al.. Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity. Nucleic Acids Research, Oxford University Press, 2009, 37 (15 e104), pp.11. 〈10.1093/nar/gkp492〉. 〈lirmm-00415899〉
  • N. Philippe, A. Boureux, Laurent Brehelin, J. Tarhio, T. Commes, et al.. Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity. Nucleic Acids Research, Oxford University Press, 2009, 37 (15), pp.e104. 〈hal-00452377〉
  • Nicolas Terrapon, Olivier Gascuel, Eric Maréchal, Laurent Brehelin. Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. Bioinformatics, Oxford University Press (OUP), 2009, 25, pp.3077-83. 〈10.1093/bioinformatics/btp560〉. 〈lirmm-00431171〉
  • Laurent Brehelin, Jean-François Dufayard, Olivier Gascuel. PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. BMC Bioinformatics, BioMed Central, 2008, 9, pp.9:440. 〈http://www.biomedcentral.com/1471-2105/9/440〉. 〈10.1186/1471-2105-9-440〉. 〈lirmm-00327273v2〉
  • Laurent Brehelin, Olivier Gascuel, Olivier Martin. Using Repeated Measurements to Validate Hierarchical Gene Clusters. Bioinformatics, Oxford University Press (OUP), 2008, 24, pp.682-688. 〈lirmm-00272116〉
  • Laurent Brehelin. A Bayesian Approach for the Clustering of Short Time Series. Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, Lavoisier, 2006, 20, pp.697-716. 〈lirmm-00113350〉

Communication dans un congrès15 documents

Pré-publication, Document de travail1 document

  • Jimmy Vandel, Océane Cassan, Sophie Lèbre, Charles-Henri Lecellier, Laurent Brehelin. Modeling transcription factor combinatorics in promoters and enhancers. 2018. 〈hal-01821485〉