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Christophe KLOPP

27

Documents

Affiliations actuelles

577435

Publications

"jerome-mariette"

	Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus Shingo Miyauchi , Hayat Hage , Elodie Drula , Laurence Lesage-Meessen , Jean-Guy Berrin DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩ Article dans une revue hal-02868456v2
	Jflow: a workflow management system for web applications Jérôme J. Mariette , Frédéric Escudié , Philippe Bardou , Ibouniyamine Ibrahime , Céline Noirot Bioinformatics, 2016, 32 (3), pp.456-458. ⟨10.1093/bioinformatics/btv589⟩ Article dans une revue hal-02631131v1
	Intra-host viral variability in children clinically infected with H1N1 (2009) pandemic influenza. Vincent Bourret , Guillaume Croville , Jean-Michel Mansuy , Catherine Mengelle , Jérôme J. Mariette Infection, Genetics and Evolution, 2015, 33, pp.47-54. ⟨10.1016/j.meegid.2015.04.009⟩ Article dans une revue hal-02637504v1
	The BioMart community portal: an innovative alternative to large, centralized data repositories Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩ Article dans une revue hal-01146849v1
	The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown Anthony Levasseur , Anne Lomascolo , Olivier Chabrol , Francisco J Ruiz-Dueñas , Eva Boukhris-Uzan BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩ Article dans une revue hal-01204353v1
	Complete Genome Sequence of a Field Strain of Peste des Petits Ruminants Virus Isolated during 2010-2014 Epidemics in Senegal Habib Salami , Guillaume Croville , Olivier Kwiatek , Jérôme J. Mariette , Christophe C. Klopp Genome Announcements, 2014, 2 (5), ⟨10.1128/genomeA.00772-14⟩ Article dans une revue hal-02630225v1
	jvenn: an interactive Venn diagram viewer Philippe Bardou , Jérôme J. Mariette , Frédéric Escudié , Christophe Djemiel , Christophe C. Klopp BMC Bioinformatics, 2014, 15 (1), pp.293. ⟨10.1186/1471-2105-15-293⟩ Article dans une revue hal-02640484v1
	Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Maxence Delverdier , Marie-Noêlle Lucas Emerging Infectious Diseases, 2014, 20 (1), pp.105-108. ⟨10.3201/eid2001.130774⟩ Article dans une revue hal-02638202v1
	RNAbrowse: RNA-Seq de novo assembly results browser. Jérôme J. Mariette , Céline Noirot , Ibouniyamine Nabihoudine , Philippe Bardou , Claire Hoede PLoS ONE, 2014, 9 (5), 7 p. ⟨10.1371/journal.pone.0096821⟩ Article dans une revue hal-02636622v1
	Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Christophe C. Klopp FEMS Microbiology Ecology, 2013, 83 (2), pp.504-514. ⟨10.1111/1574-6941.12011⟩ Article dans une revue hal-02648977v1
	Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells Vincent Bourret , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Olivier O. Bouchez Infection, Genetics and Evolution, 2013, 18, pp.31 - 41. ⟨10.1016/j.meegid.2013.04.034⟩ Article dans une revue hal-02646502v1
	The tomato genome sequence provides insights into fleshy fruit evolution Shusei Sato , Satoshi Tabata , Hideki Hirakawa , Erika Asamizu , Kenta Shirasawa Nature, 2012, 485 (7400), pp.635-641. ⟨10.1038/nature11119⟩ Article dans une revue hal-04198562v1
	The tomato genome sequence provides insights into fleshy fruit evolution Shusei Sato , Satoshi Tabata , Hideki Hirakawa , Erika Asamizu , Kenta Shirasawa Nature, 2012, 485 (7400), pp.635-641. ⟨10.1038/nature11119⟩ Article dans une revue hal-02651748v1
	NG6: Integrated next generation sequencing storage and processing environment. Jérôme J. Mariette , Frédéric Escudié , Nicolas Allias , Gérald Salin , Céline Noirot BMC Genomics, 2012, 13 (1), pp.462. ⟨10.1186/1471-2164-13-462⟩ Article dans une revue inserm-00733481v1
	Field Monitoring of Avian Inﬂuenza Viruses: Whole-Genome Sequencing and Tracking of Neuraminidase Evolution Using 454 Pyrosequencing Guillaume Croville , Sébastien Soubies , Johanna Barbieri , Christophe C. Klopp , Jérôme J. Mariette Journal of Clinical Microbiology, 2012, 50 (9), pp.2881-2887. ⟨10.1128/JCM.01142-12⟩ Article dans une revue hal-02651716v1
	Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota. Matteo Serino , Elodie Luche , Sandra Gres , Audrey Baylac , Mathieu Bergé Gut, 2012, 61 (4), pp.543-53. ⟨10.1136/gutjnl-2011-301012⟩ Article dans une revue inserm-00726182v1
	Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool Jérôme J. Mariette , Céline Noirot , Christophe C. Klopp BMC Research Notes, 2011, 4 (149), pp.1 - 4. ⟨10.1186/1756-0500-4-149⟩ Article dans une revue hal-02641837v1
	Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept. Jacques Amar , Matteo Serino , Cécile Lange , Chantal Chabo , Jason Iacovoni Diabetologia, 2011, 54 (12), pp.3055-61. ⟨10.1007/s00125-011-2329-8⟩ Article dans une revue inserm-00801269v1

	An avian coronavirus associated with fulminating disease of guinea fowl Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Maxence Delverdier , Marie-Noêlle Lucas 8th International Symposium on Avian Corona- and Metapneumoviruses and Complicating Pathogens, 2014, Rauishozhausen, Germany Communication dans un congrès hal-02740721v1
	An avian coronavirus associated with fulminating disease of guinea fowl Mariette Ducatez , Etienne Liais , Guillaume Croville , Léni Corrand , Maxence Delverdier 1st Annual COST Action FA1207 meeting, 2013, Germany Communication dans un congrès hal-02805928v1
	Molecular detection and characterization of duck respiratory viruses using unbiased high-throughput sequencing Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Fabrice Lagoutte ESVV 2012, european society for veterinary virology (ESVV)., Sep 2012, Madrid, Spain Communication dans un congrès hal-01191333v1
	Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débit Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Cécile Donnadieu Journée SEVAB, Nov 2012, Toulouse, France Communication dans un congrès hal-01191337v1
	Characterization of a microbiota of intestinal origin in white adipose tissue and stroma vascular fraction from healthy and patients according to their BMI M. M. Serino , E. E. Luche , P. P. Klopp , C. C. Chabo , Olivier O. Bouchez Congrès de la Société Francophone du Diabète, Mar 2011, Genève, Switzerland. pp.A32 Communication dans un congrès hal-01001551v1

	The ruminal level of trans-10 fatty acids of dairy cows is linked to the composition of bacterial community Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Chloé Rousseau 4. Congress of European Microbiologists, FEMS, Jun 2011, Genève, Switzerland. 1p, 2011 Poster de conférence hal-02806622v1

	Jflow: a workflow management system for web applications Jérôme J. Mariette , Frédéric Escudié , Philippe Bardou , Ibouniyamine Ibrahime , Céline Noirot 2016 Logiciel hal-02795849v1
	RNAbrowse: RNA-Seq de novo assembly results browser Jérôme J. Mariette , Céline Noirot , Ibouniyamine Nabihoudine , Philippe Bardou , Claire Hoede 2014 Logiciel hal-02795847v1
	jvenn: an interactive Venn diagram viewer Philippe Bardou , Jérôme J. Mariette , Frédéric Escudié , Christophe Djemiel , Christophe C. Klopp 2014 Logiciel hal-02795848v1