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Christophe KLOPP

368
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Affiliations actuelles
  • 577435

Publications

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OROSOMUCOID PROTEIN 1 regulation of sphingolipid synthesis is required for nodulation in Aeschynomene evenia

Nico Nouwen , Marjorie Pervent , Franck El M’chirgui , Frédérique Tellier , Maëlle Rios
Plant Physiology, 2024, 194, pp.1611 - 1630. ⟨10.1093/plphys/kiad642⟩
Article dans une revue hal-04531112v1
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Insights into the molecular mechanisms of pesticide tolerance in the Aporrectodea caliginosa earthworm

Audrey Barranger , Christophe Klopp , Barbara Le Bot , Gaëlle Saramito , Lise Dupont
Environmental Pollution, 2023, 319, pp.120945. ⟨10.1016/j.envpol.2022.120945⟩
Article dans une revue hal-03927240v1
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DNAModAnnot: a R toolbox for DNA modification filtering and annotation

Alexis Hardy , Mélody Matelot , Amandine Touzeau , Christophe C. Klopp , Céline Lopez-Roques
Bioinformatics, 2023, 37 (17), pp.2738-2740. ⟨10.1093/bioinformatics/btab032⟩
Article dans une revue hal-04126944v1
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Fourth report on chicken genes and chromosomes 2022

Jacqueline Smith , James Alfieri , Nick Anthony , Peter Arensburger , Giridhar Athrey
Cytogenetic and Genome Research, 2023, 162 (8-9), pp.405-528. ⟨10.1159/000529376⟩
Article dans une revue hal-04217636v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
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Whole genome sequencing reveals signals of adaptive admixture in Creole cattle

Slim Ben-Jemaa , Gabriele Adam , Mekki Boussaha , Philippe Bardou , Christophe C. Klopp
Scientific Reports, 2023, 13 (1), pp.12155. ⟨10.1038/s41598-023-38774-7⟩
Article dans une revue hal-04186791v1

Multidisciplinary approach to explore interactions in odor mixture perception

Thierry Thomas-Danguin , Anne-Marie Le Bon , Olivier Taboureau , David D. Jarriault , Frédérique Datiche
Chemical Senses, 2023, 48, pp.bjad029.16
Article dans une revue hal-04473367v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp
Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩
Article dans une revue hal-03737450v1

Mosaic Evolution of Molecular Pathways for Sex Pheromone Communication in a Butterfly

Christophe Klopp , Bertanne Visser , Caroline M. Nieberding , Patricia Beldade , Véronique Baumlé
Genes, 2022, 13 (8), pp.1372. ⟨10.3390/genes13081372⟩
Article dans une revue hal-03990268v1
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Venomics survey of six myrmicine ants provides insights into the molecular and structural diversity of their peptide toxins

Valentine Barassé , Nathan Téné , Christophe Klopp , Françoise Paquet , Niklas Tysklind
Insect Biochemistry and Molecular Biology, 2022, 151, pp. 103876. ⟨10.1016/j.ibmb.2022.103876⟩
Article dans une revue hal-04446316v1
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A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Quentin Piet , Gaetan Droc , William Marande , Gautier Sarah , Stéphanie Bocs
Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩
Article dans une revue hal-03678239v1
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Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity

Emilie Dordet-Frisoni , Céline Vandecasteele , Rachel Contarin , Eveline Sagné , Eric Baranowski
Microbial Genomics, 2022, 8 (5), pp.000829. ⟨10.1099/mgen.0.000829⟩
Article dans une revue hal-03716470v2
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A mutant-based analysis of the establishment of Nod-independent symbiosis in the legume Aeschynomene evenia

Johan Quilbé , Nico Nouwen , Marjorie Pervent , Rémi Guyonnet , Julie Cullimore
Plant Physiology, 2022, 190 (2), pp.1400-1417. ⟨10.1093/plphys/kiac325⟩
Article dans une revue hal-03791400v1
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MINTIA: a metagenomic INserT integrated assembly and annotation tool

Philippe Bardou , Sandrine Laguerre , Sarah Maman Haddad , Sabrina Legoueix , Elisabeth Laville
PeerJ, 2021, 9, 13 p. ⟨10.7717/peerj.11885⟩
Article dans une revue hal-03407218v1
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Genetics of nodulation in Aeschynomene evenia uncovers mechanisms of the rhizobium-legume symbiosis

Johan Quilbé , Léo Lamy , Laurent Brottier , Philippe Leleux , Joël Fardoux
Nature Communications, 2021, 12, ⟨10.1038/s41467-021-21094-7⟩
Article dans une revue hal-03141624v1
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Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained

Fabien Degalez , Frédéric Jehl , Kévin Muret , Maria Bernard , Frédéric Lecerf
Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩
Article dans une revue hal-03280040v1

A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Kang Du
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200089. ⟨10.1098/rstb.2020.0089⟩
Article dans une revue hal-03329961v1
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The immune system of sturgeons and paddlefish (Acipenseriformes): a review with new data from a chromosome‐scale sturgeon genome

Christin Höhne , Dmitry Prokopov , Heiner Kuhl , Kang Du , Christophe Klopp
Reviews in Aquaculture, 2021, 13 (3), pp.1709-1729. ⟨10.1111/raq.12542⟩
Article dans une revue hal-04126879v1
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Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

Emilie Réalis-Doyelle , Julie Schwartz , Cédric Cabau , Lorane Le Franc , Benoit Bernay
Marine drugs, 2021, 19 (8), pp.452. ⟨10.3390/md19080452⟩
Article dans une revue hal-03330324v1
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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm
Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩
Article dans une revue hal-03521507v1

RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data

Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno
Molecular Ecology Resources, 2021, 21 (5), pp.1715-1731. ⟨10.1111/1755-0998.13360⟩
Article dans une revue hal-03150035v1
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Contrasting gene decay in subterranean vertebrates: insights from cavefishes and fossorial mammals

Maxime Policarpo , Julien Fumey , Philippe Lafargeas , Delphine Naquin , Claude Thermes
Molecular Biology and Evolution, 2021, 38 (2), pp.589-605. ⟨10.1093/molbev/msaa249⟩
Article dans une revue hal-02968373v1
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Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish

Daniel Żarski , Aurelie Le Cam , Thomas Frohlich , Miwako Kösters , Christophe C. Klopp
Genomics, 2021, 113 (6), pp.3811-3826. ⟨10.1016/j.ygeno.2021.09.003⟩
Article dans une revue hal-03342588v2

Development of a polymerase chain reaction (PCR)-based genetic sex identification method in the chub mackerel Scomber japonicus and blue mackerel S. australasicus

Reoto Tani , Wataru Kawamura , Tetsuro Morita , Christophe C. Klopp , Marine Milhes
Fisheries Science, 2021, 87 (6), pp.785-793. ⟨10.1007/s12562-021-01548-z⟩
Article dans une revue hal-03338956v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling

Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte
Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩
Article dans une revue hal-03276149v1
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The rise and fall of the ancient northern pike master sex-determining gene

Qiaowei Pan , Romain Feron , Elodie Jouanno , Hugo Darras , Amaury Herpin
eLife, 2021, 10, pp.e62858. ⟨10.7554/eLife.62858⟩
Article dans une revue hal-03139073v2
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A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron
Current Biology - CB, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Article dans une revue hal-03337251v1
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Molecular signatures of muscle growth and composition deciphered by the meta-analysis of age-related public transcriptomics data

Jeanne Bazile , Florence Jaffrezic , Patrice Dehais , Matthieu Matthieu.Reichstadt@inrae.Fr Reichstadt , Christophe C. Klopp
Physiological Genomics, 2020, 52 (8), pp.322-332. ⟨10.1152/physiolgenomics.00020.2020⟩
Article dans une revue hal-02937790v1
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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Kang Du , Matthias Stöck , Susanne Kneitz , Christophe C. Klopp , Joost Woltering
Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩
Article dans une revue hal-02640938v1

Vespa Velutina - Les virus du frelon, une menace ou un espoir ?

Anne Dalmon , Philippe Gayral , Damien Decante , Christophe C. Klopp , D. Bigot
La Santé de l'Abeille, 2020, 296, pp.141-145
Article dans une revue hal-03113994v1
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Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno
BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩
Article dans une revue hal-02937875v1
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Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning

Johanne Aubé , Pavel Senin , Patricia Bonin , Olivier Pringault , Céline Jeziorski
Microbial ecology, 2020, 80 (2), pp.286-295. ⟨10.1007/s00248-020-01493-x⟩
Article dans une revue hal-03065790v1
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Biological rhythms in the deep-sea hydrothermal mussel Bathymodiolus azoricus

Audrey Mat , Jozée Sarrazin , Gabriel Markov , Vincent Apremont , Christine Dubreuil
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-17284-4⟩
Article dans une revue hal-02907599v1
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Transfer and Transcriptomic Profiling in Liver and Brain of European Eels ( Anguilla anguilla ) After Diet‐borne Exposure to Gold Nanoparticles

Fanny Perrier , Anthony Bertucci , Fabien Pierron , Agnès Feurtet‐mazel , Olivier Simon
Environmental Toxicology and Chemistry, 2020, 39 (12), pp.2450-2461. ⟨10.1002/etc.4858⟩
Article dans une revue hal-02975506v1
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Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca

Daniel Żarski , Aurélie Le Cam , Joanna Nynca , Christophe C. Klopp , Sławomir Ciesielski
Molecular Reproduction and Development, 2020, 87 (9), pp.934-951. ⟨10.1002/mrd.23414⟩
Article dans une revue hal-02935418v1
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Siberian sturgeon multi-tissue reference transcriptome database

Christophe C. Klopp , Cédric Cabau , Gonzalo Greif , André Lasalle , Santiago Di Landro
Database - The journal of Biological Databases and Curation, 2020, 2020, pp.1-8. ⟨10.1093/database/baaa082⟩
Article dans une revue hal-03157672v1
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CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes

Heiner Kuhl , Ling Li , Sven Wuertz , Matthias Stöck , Xu-Fang Liang
GigaScience, 2020, 9 (5), ⟨10.1093/gigascience/giaa034⟩
Article dans une revue hal-03182981v1

Venom peptide repertoire of the european myrmicine ant manica rubida: identification of insecticidal toxins

Axel Touchard , Samira R Aili , Nathan Téné , Valentine Barassé , Christophe C. Klopp
Journal of Proteome Research, 2020, 19 (4), pp.1800-1811. ⟨10.1021/acs.jproteome.0c00048⟩
Article dans une revue hal-02570243v1
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Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola )

Ngan Thi Phan , Julie Orjuela , Etienne Danchin , Christophe C. Klopp , Laetitia Perfus‐barbeoch
Ecology and Evolution, 2020, 10 (20), pp.11006-11021. ⟨10.1002/ece3.6680⟩
Article dans une revue hal-02988764v1
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

Frédéric Jehl , Kévin Muret , Maria Bernard , Morgane Boutin , Laetitia Lagoutte
Scientific Reports, 2020, 10 (1), pp.1-17. ⟨10.1038/s41598-020-77586-x⟩
Article dans une revue hal-03039897v1
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RNA-Seq transcriptome data of undifferentiated and differentiated gonads of Siberian sturgeon

Christophe C. Klopp , André Lasalle , Santiago Di Landro , Denise Vizziano-Cantonnet
Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105741⟩
Article dans une revue hal-03182864v1

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩
Article dans une revue hal-02623895v1

Multi-tissue Siberian sturgeon RNA sequencing data

Christophe C. Klopp , Cédric Cabau , André Lasalle , Santiago Di Landro , Gonzalo Greif
Data in Brief, 2020, 31, ⟨10.1016/j.dib.2020.105820⟩
Article dans une revue hal-03157670v1
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Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi , Hayat Hage , Elodie Drula , Laurence Lesage-Meessen , Jean-Guy Berrin
DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩
Article dans une revue hal-02868456v2
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Le projet « Mille Génomes Gallus » : partager les données de séquences pour mieux les utiliser

Michèle Tixier-Boichard , Frédéric Lecerf , Frédéric Herault , Philippe Bardou , Christophe C. Klopp
INRAE Productions Animales, 2020, 33 (3), pp.189-202. ⟨10.20870/productions-animales.2020.33.3.4564⟩
Article dans une revue hal-03103324v1
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Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩
Article dans une revue hal-02624885v1
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Responses to iron oxide and zinc oxide nanoparticles in echinoderm embryos and microalgae: uptake, growth, morphology, and transcriptomic analysis

Anne-Marie Genevière , Evelyne Derelle , Marie-Line Escande , Nigel Grimsley , Christophe C. Klopp
Nanotoxicology, 2020, pp.1-20. ⟨10.1080/17435390.2020.1827074⟩
Article dans une revue hal-02978528v1

Independent origin of XY and ZW sex determination mechanisms in Mosquitofish sister species

Verena A. Kottler , Romain Feron , Indrajit Nanda , Christophe C. Klopp , Kang Du
Genetics, 2020, 214 (1), pp.193-209. ⟨10.1534/genetics.119.302698⟩
Article dans une revue hal-02624941v1
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Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains

Marisol Goñi , Christophe C. Klopp , Magali Ranchou-Peyruse , Anthony Ranchou-Peyruse , Mathilde Monperrus
Research in Microbiology, 2020, 171 (1), pp.3-12. ⟨10.1016/j.resmic.2019.10.003⟩
Article dans une revue hal-02390352v1
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau
BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩
Article dans une revue hal-02437599v1
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Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology

Romain Péden , Pascal Poupin , Bénédicte Sohm , Justine Flayac , Laure Giambérini
Scientific Data , 2019, 6 (1), pp.234. ⟨10.1038/s41597-019-0252-x⟩
Article dans une revue hal-02337309v1
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Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

Anja Striberny , Even H Jørgensen , Christophe C. Klopp , Elodie Magnanou
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-5874-z⟩
Article dans une revue hal-02182476v1
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Transcriptome variation in response to gastrointestinal nematode infection in goats

Hadeer Aboshady , Nathalie Mandonnet , Michaël Stear , Rémy Arquet , Malia Bédèrina
PLoS ONE, 2019, 14 (6), Non paginé. ⟨10.1371/journal.pone.0218719⟩
Article dans une revue hal-02620106v1
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RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed

Frédéric Herault , Nathalie Houee-Bigot , Elisabeth Baéza , Olivier Bouchez , Diane Esquerré
BMC Genomics, 2019, 20 (13), pp.1-14. ⟨10.1186/s12864-018-5415-1⟩
Article dans une revue hal-02135884v1
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Transcriptomic view of detached lettuce leaves during storage: A crosstalk between wounding, dehydration and senescence

Julie Ripoll , Florence Charles , Véronique Vidal , Sandrine Laurent , Christophe C. Klopp
Postharvest Biology and Technology, 2019, 152, pp.73-88. ⟨10.1016/j.postharvbio.2019.02.004⟩
Article dans une revue hal-02063254v1
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Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach

Frédéric Jehl , Colette Désert , Christophe C. Klopp , Mathias Brenet , Andrea Rau
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6384-8⟩
Article dans une revue hal-02463367v1
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The genome of the arapaima (Arapaima gigas) provides insights into gigantism, fast growth and chromosomal sex determination system

Kang Du , Sven Wuertz , Mateus Adolfi , Susanne Kneitz , Matthias Stöck
Scientific Reports, 2019, 9 (1), pp.1-11. ⟨10.1038/s41598-019-41457-x⟩
Article dans une revue hal-02090589v1
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Viruses in the Invasive Hornet Vespa velutina

Anne Dalmon , Philippe Gayral , Damien Decante , Christophe C. Klopp , Diane Bigot
Viruses, 2019, 11 (11), pp.1041. ⟨10.3390/v11111041⟩
Article dans une revue hal-02388796v1
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Transcription Profiling of Monocyte-Derived Macrophages Infected In Vitro With Two Strains of Streptococcus agalactiae Reveals Candidate Pathways Affecting Subclinical Mastitis in Cattle

Anna Monika Lewandowska-Sabat , Trygve Roger Solberg , Anna Monika Lewandowska-Sabat , Elena Kirsanova , Christophe C. Klopp
Frontiers in Genetics, 2019, 10, ⟨10.3389/fgene.2019.00689⟩
Article dans une revue hal-03114992v1
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Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno
PLoS Genetics, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩
Article dans une revue inserm-02279967v1
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The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae)

Valentine Barassé , Axel Touchard , Nathan Téné , Maurice Tindo , Martin Kenne
Toxins, 2019, 11 (12), pp.732. ⟨10.3390/toxins11120732⟩
Article dans une revue hal-03115116v1
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Structure of the intergenic spacers in chicken ribosomal DNA

Alexander Dyomin , Svetlana Galkina , Valerie Fillon , Stephane Cauet , Celine Lopez-Roques
Genetics Selection Evolution, 2019, 51 (1), pp.59. ⟨10.1186/s12711-019-0501-7⟩
Article dans une revue hal-02334969v1
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Domestication may affect the maternal mRNA profile in unfertilized eggs, potentially impacting the embryonic development of Eurasian perch (Perca fluviatilis)

Taina Rocha de Almeida , Maud Alix , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
PLoS ONE, 2019, 14 (12), pp.1-25. ⟨10.1371/journal.pone.0226878⟩
Article dans une revue hal-02627554v1
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Draft genome assembly and annotation of the gila topminnow Poeciliopsis occidentalis

Mariana Mateos , Du Kang , Christophe C. Klopp , Hugues Parrinello , Mateo Garcia-Olazabal
Frontiers in Ecology and Evolution, 2019, 7, pp.1-7. ⟨10.3389/fevo.2019.00404⟩
Article dans une revue hal-02620825v1
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Identification of potential chemosignals in the European water vole Arvicola terrestris

Patricia Nagnan-Le Meillour , Amandine Descamps , Chrystelle Le Danvic , Maurane Grandmougin , Jean-Michel Saliou
Scientific Reports, 2019, 9 (18378), ⟨10.1038/s41598-019-54935-z⟩
Article dans une revue hal-02400712v1
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Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

Eloi R. Verrier , Carine Genet , Denis Laloë , Florence Jaffrezic , Andrea Rau
BMC Genomics, 2018, 19 (1), pp.Non Paginé. ⟨10.1186/s12864-018-4860-1⟩
Article dans une revue hal-02444518v1
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Highly promiscuous oxidases discovered in the bovine rumen microbiome

Lisa Ufarté , Gabrielle Veronese , Davide Cecchini , Alexandra Tauzin , Angeline Rizzo
Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.00861⟩
Article dans une revue hal-01886471v1
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Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential

Élodie Choque , Christophe C. Klopp , Sophie Valiere , José Raynal , Florence Mathieu
BMC Genomics, 2018, 19 (1), pp.0. ⟨10.1186/s12864-018-4574-4⟩
Article dans une revue hal-02143190v1
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Oak genome reveals facets of long lifespan

Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Article dans une revue hal-01820559v1
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One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

Nassima Illikoud , Christophe C. Klopp , Alain Roulet , Olivier Bouchez , Nathalie Marsaud
Standards in Genomic Sciences, 2018, 13 (1), pp.1-12. ⟨10.1186/s40793-018-0333-z⟩
Article dans une revue hal-02154348v1
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Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation

Elodie Gaulin , Michiel Pel , Laurent Camborde , Hélène San Clemente , Sarah Courbier
BMC Biology, 2018, 16 (1), ⟨10.1186/s12915-018-0508-5⟩
Article dans une revue hal-01891875v1
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Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

Fanny Mondet , Andrea Rau , Christophe C. Klopp , Marine Rohmer , Dany Severac
BMC Genomics, 2018, 19 (1), pp.328. ⟨10.1186/s12864-018-4668-z⟩
Article dans une revue inserm-02063466v1

Whole-transcriptome response to wastewater treatment plant and stormwater effluents in the Asian clam, Corbicula fluminea

Anthony Bertucci , Fabien Pierron , Pierre-Yves Gourves , Christophe C. Klopp , Gauthier Lagarde
Ecotoxicology and Environmental Safety, 2018, 165, pp.96-106. ⟨10.1016/j.ecoenv.2018.08.090⟩
Article dans une revue hal-02324139v1

De novo transcriptome analysis to search for sex-differentiation genes in the Siberian sturgeon

Denise Vizziano-Cantonnet , Andre Lasalle , Santiago Di Landro , Christophe C. Klopp , Clémence Genthon
General and Comparative Endocrinology, 2018, 268, pp.96 - 109. ⟨10.1016/j.ygcen.2018.08.007⟩
Article dans une revue hal-02621654v1
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Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Audrey Segura , Marine Bertoni , Pauline Auffret , Christophe C. Klopp , Olivier Bouchez
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-5167-y⟩
Article dans une revue hal-02628554v1

Rapid whole-genome based typing and surveillance of avipoxviruses using nanopore sequencing.

Guillaume Croville , Guillaume Le Loc'H , Catherine Zanchetta , Maxime Manno , Christelle Camus-Bouclainville
Journal of Virological Methods, 2018, 261, pp.34-39. ⟨10.1016/j.jviromet.2018.08.003⟩
Article dans une revue hal-02626516v1
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Ten steps to get started in Genome Assembly and Annotation

Victoria Dominguez del Angel , Erik Hjerde , Lieven Sterck , Salvadors Capella-Gutierrez , Cedric Notredame
F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
Article dans une revue hal-01712874v1
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D-GENIES: dot plot large genomes in an interactive, efficient and simple way.

Floréal Cabanettes , Christophe C. Klopp
PeerJ, 2018, 6, pp.e4958. ⟨10.7717/peerj.4958⟩
Article dans une revue hal-02625819v1

Oyster transcriptome response to Alexandrium exposure is related to saxitoxin load and characterized by disrupted digestion, energy balance, and calcium and sodium signaling

Audrey Mat , Christophe C. Klopp , Laura Payton , Céline Jeziorski , Morgane Chalopin
Aquatic Toxicology, 2018, 199, pp.127-137. ⟨10.1016/j.aquatox.2018.03.030⟩
Article dans une revue hal-02324597v1
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Genome Sequence of the Yeast Clavispora lusitaniae Type Strain CBS 6936

Pascal Durrens , Christophe C. Klopp , Nicolas Biteau , Valérie Fitton-Ouhabi , Karine Dementhon
Genome Announcements, 2017, 5 (31), pp.e00724-17. ⟨10.1128/genomeA.00724-17⟩
Article dans une revue hal-01583349v1

Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype

Noe Cochetel , Frédéric Escudie , Sarah Jane Cookson , Zhanwu Dai , Philippe Vivin
Journal of Experimental Botany, 2017, 68 (15), pp.4339 - 4355. ⟨10.1093/jxb/erx224⟩
Article dans une revue hal-01608893v1
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Variant discovery in the sheep milk transcriptome using RNA sequencing

Aroa Suárez-Vega , Beatriz Gutiérrez-Gil , Christophe C. Klopp , Gwenola Tosser-Klopp , Juan José Arranz
BMC Genomics, 2017, 18, Non paginé. ⟨10.1186/s12864-017-3581-1⟩
Article dans une revue hal-01604370v1

Tench (Tinca tinca) high-throughput transcriptomics reveal feed dependent gut profiles

Remigiusz Panicz , Christophe C. Klopp , Rafał Igielski , Paulina Hofsoe , Jacek Sadowski
Aquaculture, 2017, 479, pp.200-207. ⟨10.1016/j.aquaculture.2017.05.047⟩
Article dans une revue hal-01608923v1

Reconstructing the genome of the most recent common ancestor of flowering plants

Florent Murat , Alix Armero Villanueva , Caroline Pont , Christophe C. Klopp , Jerome Salse
Nature Genetics, 2017, 49, pp.490-496. ⟨10.1038/ng.3813⟩
Article dans une revue hal-01605642v1
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A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic

Orlane Patrascu , Fabienne Beguet-Crespel , Ludovica Marinelli , Emmanuelle Le Chatelier , Anne-Laure Abraham
Scientific Reports, 2017, 7, ⟨10.1038/srep40248⟩
Article dans une revue hal-01606551v1
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Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France

Pauline Auffret , Audrey Segura , Yolande Bertin , Christophe C. Klopp , Olivier Bouchez
Genome Announcements, 2017, 5 (40), ⟨10.1128/genomeA.01097-17⟩
Article dans une revue hal-01658407v1
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Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract

Audrey Segura , Pauline Auffret , Christophe C. Klopp , Yolande Bertin , Evelyne Forano
Standards in Genomic Sciences, 2017, 12 (1), ⟨10.1186/s40793-017-0272-0⟩
Article dans une revue hal-02626891v1
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Identification of copy number variation in French dairy and beef breeds using next-generation sequencing

Rabia Letaief , Emmanuelle Rebours , Cécile Grohs , Cédric Meersseman , Sébastien Fritz
Genetics Selection Evolution, 2017, 49 (1), pp.77. ⟨10.1186/s12711-017-0352-z⟩
Article dans une revue hal-01622967v1
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Stable Polycomb-dependent transgenerational inheritance of chromatin states in Drosophila

Filippo Ciabrelli , Federico Comoglio , Simon Fellous , Boyan Bonev , Maria Ninova
Nature Genetics, 2017, 49 (6), pp.876-886. ⟨10.1038/ng.3848⟩
Article dans une revue hal-01529240v1
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Genetic variability of the activity of bidirectional promoters : a pilot study in bovine muscle

Cédric Meerssemann , Rabia Letaief , Véronique Léjard , Emmanuelle Rebours , Gabriel Guillocheau
DNA Research, 2017, 24 (3), pp.221-233. ⟨10.1093/dnares/dsx004⟩
Article dans une revue hal-01606875v1

De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam

Jean-Yves Mazzitelli , Elsa Bonnafé , Christophe C. Klopp , Frédéric Escudie , Florence Geret
Ecotoxicology, 2017, 26 (1), pp.127-140. ⟨10.1007/s10646-016-1748-1⟩
Article dans une revue hal-01605095v1
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The role of rhizobial (NifV) and plant (FEN1) homocitrate synthases in Aeschynomene/photosynthetic Bradyrhizobium symbiosis

Nico Nouwen , Jean-François Arrighi , Fabienne Cartieaux , Clémence Chaintreuil , Djamel Gully
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-00559-0⟩
Article dans une revue hal-02619423v1
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Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai
Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩
Article dans une revue hal-01431420v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Article dans une revue hal-01788671v1
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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe
PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩
Article dans une revue hal-01506620v1

About Ganoderma boninense in oil palm plantations of Sumatra and peninsular Malaysia: Ancient population expansion, extensive gene flow and large scale dispersion ability

Maxime Mercière , Romain Boulord , Catherine Carasco-Lacombe , Christophe C. Klopp , Yang-Ping Lee
Fungal Biology, 2017, 121 (6-7), pp.529-540. ⟨10.1016/j.funbio.2017.01.001⟩
Article dans une revue hal-02622016v1

Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description

Lucas Auer , Mahendra Mariadassou , Michael O'Donohue , Christophe C. Klopp , Guillermina Hernandez-Raquet
Molecular Ecology Resources, 2017, ⟨10.1111/1755-0998.12700⟩
Article dans une revue hal-01605865v1

Transcriptomic responses of the endangered freshwater mussel Margaritifera margaritifera to trace metal contamination in the Dronne River, France

Anthony Bertucci , Fabien Pierron , Julien Thébault , Christophe C. Klopp , Julie Bellec
Environmental Science and Pollution Research, 2017, 24 (35), pp.27145-27159. ⟨10.1007/s11356-017-0294-6⟩
Article dans une revue hal-02571118v1
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Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain

Marisol Goñi , Claire Gassie , Remy Guyoneaud , Oliver Bouchez , Christophe C. Klopp
Genome Announcements, 2017, 5 (3), pp.e01483-16. ⟨10.1128/genomeA.01483-16⟩
Article dans une revue hal-01481298v1
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Rapid discovery of de novo deleterious mutations in cattle enhances the value of livestock as model species

Emmanuelle Bourneuf , P. Otz , H. Pausch , V. Jagannathan , Pauline Michot
Scientific Reports, 2017, 7 (1), pp.11466. ⟨10.1038/s41598-017-11523-3⟩
Article dans une revue hal-01608270v1
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Discovery of carbamate degrading enzymes by functional metagenomics

Lisa Ufarté , Elisabeth Laville , Sophie Duquesne , Diego Morgavi , Patrick Robe
PLoS ONE, 2017, 12 (12), 21 p. ⟨10.1371/journal.pone.0189201⟩
Article dans une revue hal-01886441v1
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The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles

Kamila Belhabich-Baumas , Clément Joret , Beáta E. Jády , Célia Plisson-Chastang , Ramtin Shayan
Nucleic Acids Research, 2017, 45 (18), ⟨10.1093/nar/gkx734⟩
Article dans une revue hal-01608918v1
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Article dans une revue hal-01487023v1

Identification and characterization of copy number variations in cattle

Rabia Letaief , Diane Esquerre , Johanna Barbieri , Cécile Grohs , Sebastien Fritz
Journal of Animal Science, 2016, 94, pp.183-183. ⟨10.2527/jas2016.94supplement4183a⟩
Article dans une revue hal-01605684v1
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Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome

Aroa Suárez-Vega , Beatriz Gutiérrez-Gil , Christophe C. Klopp , Gwenola Tosser-Klopp , Juan-José Arranz
Scientific Data , 2016, 3, Non paginé. ⟨10.1038/sdata.2016.51⟩
Article dans une revue hal-02630260v1
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The extent of mRNA editing is limited in chicken liver and adipose, but impacted by tissular context, genotype, age and feeding as exemplified with a conserved edited site in COG3

Pierre-François Roux , Laure Fresard , Morgane Boutin , Sophie Leroux , Christophe C. Klopp
G3, 2016, 6 (2), pp.321-335. ⟨10.1534/g3.115.022251⟩
Article dans une revue hal-01251260v1
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Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences

Mekki Boussaha , Pauline Michot , Rabia Letaief , Chris Hozé , Sébastien Fritz
Genetics Selection Evolution, 2016, 48 (1), pp.87. ⟨10.1186/s12711-016-0268-z⟩
Article dans une revue hal-01479216v1

Evolutionary origins of rhizarian parasites

Roberto Sierra , Silvia J. Canas-Duarte , Fabien Burki , Arne Schwelm , Johan Fogelqvist
Molecular Biology and Evolution, 2016, 33 (4), pp.980-983. ⟨10.1093/molbev/msv340⟩
Article dans une revue hal-02641707v1
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Complete Genome Sequence of Lactococcus lactissubsp. lactis A12, a Strain Isolated from Wheat Sourdough

Maeva Guellerin , Delphine Passerini , Catherine Fontagné-Faucher , Hervé Robert , Valérie Gabriel
Genome Announcements, 2016, 4 (5), pp.2 P. ⟨10.1128/genomeA.00692-16⟩
Article dans une revue hal-01578250v1

Jflow: a workflow management system for web applications

Jérôme J. Mariette , Frédéric Escudié , Philippe Bardou , Ibouniyamine Ibrahime , Céline Noirot
Bioinformatics, 2016, 32 (3), pp.456-458. ⟨10.1093/bioinformatics/btv589⟩
Article dans une revue hal-02631131v1
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Correction : Design and Characterization of a 52K SNP Chip for Goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans
PLoS ONE, 2016, 11 (3), pp.Non Paginé. ⟨10.1371/journal.pone.0152632⟩
Article dans une revue hal-01602260v1

The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats

Johanne Aubé , Pavel Senin , Olivier Pringault , Patricia Bonin , Bruno Deflandre
Marine Pollution Bulletin, 2016, 111 (1-2), pp.115-125. ⟨10.1016/j.marpolbul.2016.07.023⟩
Article dans une revue ird-02048573v1
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A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes

Clémence Chaintreuil , Ronan Rivallan , David Bertioli , Christophe C. Klopp , Jerome Gouzy
DNA Research, 2016, 23 (4), pp.365-376. ⟨10.1093/dnares/dsw020⟩
Article dans une revue hal-02410329v1
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Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections

Saliha Hammoumi , Tatiana Vallaeys , Ayi Santika , Philippe Leleux , Ewa Borzym
PeerJ, 2016, 4, ⟨10.7717/peerj.2516⟩
Article dans une revue hal-02637141v1

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly

Jérôme Bartholomé , Eric Mandrou , André Mabiala , Jerry Jenkins , Ibouniyamine Nabihoudine
New Phytologist, 2015, 206 (4), pp.1283-1296. ⟨10.1111/nph.13150⟩
Article dans une revue hal-02637865v1
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Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates

Laure Fresard , Sophie Leroux , Pierre-François Roux , Christophe C. Klopp , Stéphane Fabre
PLoS ONE, 2015, 10 (5), pp.1-20. ⟨10.1371/journal.pone.0126776⟩
Article dans une revue hal-01207762v1
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Combining GWAS and RNA-Seq Approaches for Detection of the Causal Mutation for Hereditary Junctional Epidermolysis Bullosa in Sheep

Aroa Suárez-Vega , Beatriz Gutiérrez-Gil , Julio Benavides , Valentín Pérez , Gwenola Tosser-Klopp
PLoS ONE, 2015, 10 (5), Non paginé. ⟨10.1371/journal.pone.0126416⟩
Article dans une revue hal-02631344v1

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

Isabelle Lesur Kupin Lesur , Alison Bechade , Céline C. Lalanne , Christophe C. Klopp , Céline Noirot
Molecular Ecology Resources, 2015, 15 (5), pp.1192-1204. ⟨10.1111/1755-0998.12373⟩
Article dans une revue hal-02640346v1
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GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas

Guillaume Riviere , Christophe C. Klopp , Nabihoudine Ibouniyamine , Arnaud Huvet , Pierre Boudry
BMC Bioinformatics, 2015, 16, pp.401. ⟨10.1186/s12859-015-0833-4⟩
Article dans une revue hal-01258440v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé
BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩
Article dans une revue hal-02285504v1
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Characterization and comparative analysis of the milk transcriptome in two dairy sheep breeds using RNA sequencing

Aroa Suárez-Vega , Beatriz Gutiérrez-Gil , Christophe C. Klopp , Christèle Robert-Granié , Gwenola Tosser-Klopp
Scientific Reports, 2015, 5, pp.1-11. ⟨10.1038/srep18399⟩
Article dans une revue hal-02638220v1
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RNA-seq de novo assembly reveals differential gene expression in Glossina palpalis gambiensis infected with Trypanosoma brucei gambiense vs. non-infected and self-cured flies

Illiassou Hamidou Soumana , Christophe C. Klopp , Sophie Ravel , Ibouniyamine Nabihoudine , Bernadette Tchicaya
Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.01259⟩
Article dans une revue hal-02067248v1
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Combined QTL and selective sweep mappings with coding SNP annotation and cis-eQTL analysis revealed PARK2 and JAG2 as new candidate genes for adiposity regulation.

Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner
G3, 2015, 5, pp.517-529. ⟨10.1534/g3.115.016865⟩
Article dans une revue hal-01194040v1
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Genome-wide study of structural variants in bovine Holstein, Montbéliarde and Normande dairy breeds

Mekki Boussaha , Diane Esquerre , Johanna Barbieri , Anis Djari , Alain Pinton
PLoS ONE, 2015, 10 (8), pp.1-21. ⟨10.1371/journal.pone.0135931⟩
Article dans une revue hal-01194172v1
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The BioMart community portal: an innovative alternative to large, centralized data repositories

Damian Smedley , Syed Haider , Steffen Durinck , Luca Pandini , Paolo Provero
Nucleic Acids Research, 2015, 43 (W1), pp.W589-W598. ⟨10.1093/nar/gkv350⟩
Article dans une revue hal-01146849v1

Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings

Pierre-François Roux , Sylvain Marthey , Anis Djari , Marco Moroldo , Diane Esquerre
Animal Genetics, 2015, 46 (1), pp.82-86. ⟨10.1111/age.12248⟩
Article dans une revue hal-01194013v1

Intra-host viral variability in children clinically infected with H1N1 (2009) pandemic influenza.

Vincent Bourret , Guillaume Croville , Jean-Michel Mansuy , Catherine Mengelle , Jérôme J. Mariette
Infection, Genetics and Evolution, 2015, 33, pp.47-54. ⟨10.1016/j.meegid.2015.04.009⟩
Article dans une revue hal-02637504v1

Identification and development of new polymorphic microsatellite markers using genome assembly for Ganoderma boninense, causal agent of oil palm basal stem rot disease

Maxime Mercière , Anthony Laybats , Catherine Carasco-Lacombe , Joon Sheong Tan , Christophe C. Klopp
Mycological Progress, 2015, 14 (11), ⟨10.1007/s11557-015-1123-2⟩
Article dans une revue hal-02641658v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Article dans une revue hal-01579667v1
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Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife

Maria Razzauti Sanfeliu , Maxime Galan , Maria Bernard , Sarah Maman Haddad , Christophe C. Klopp
PLoS Neglected Tropical Diseases, 2015, 9 (8), ⟨10.1371/journal.pntd.0003929⟩
Article dans une revue hal-01250505v1

Complete Genome Sequence of a Field Strain of Peste des Petits Ruminants Virus Isolated during 2010-2014 Epidemics in Senegal

Habib Salami , Guillaume Croville , Olivier Kwiatek , Jérôme J. Mariette , Christophe C. Klopp
Genome Announcements, 2014, 2 (5), ⟨10.1128/genomeA.00772-14⟩
Article dans une revue hal-02630225v1
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jvenn: an interactive Venn diagram viewer

Philippe Bardou , Jérôme J. Mariette , Frédéric Escudié , Christophe Djemiel , Christophe C. Klopp
BMC Bioinformatics, 2014, 15 (1), pp.293. ⟨10.1186/1471-2105-15-293⟩
Article dans une revue hal-02640484v1

The loss of adipokine genes in the chicken genome and implications for insulin metabolism

Natasa Dakovic , Morgane Terezol , Frederique Pitel , Virginie Maillard , Sébastien Elis
Molecular Biology and Evolution, 2014, 31 (10), pp.2637-2646. ⟨10.1093/molbev/msu208⟩
Article dans une revue hal-01129850v1

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

Javier Canales , Rocío Bautista , Philippe Label , Josefa Gómez-Maldonado , Isabelle Lesur Kupin Lesur
Plant Biotechnology Journal, 2014, 12 (3), pp.286-299. ⟨10.1111/pbi.12136⟩
Article dans une revue hal-02640932v1
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De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species

Wafa Bouzid , Marion Verdenaud , Christophe C. Klopp , Frédéric Ducancel , Céline Noirot
BMC Genomics, 2014, 15 (987), pp.1-18. ⟨10.1186/1471-2164-15-987⟩
Article dans une revue hal-02636117v1

Generation and characterization of the sea bass Dicentrarchus labrax brain and liver transcriptomes.

Elodie Magnanou , Christophe C. Klopp , Céline Noirot , Laurence Besseau , Jack Falcon
Gene, 2014, 544 (1), pp.56-66. ⟨10.1016/j.gene.2014.04.032⟩
Article dans une revue hal-02641536v1
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The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur , Anne Lomascolo , Olivier Chabrol , Francisco J Ruiz-Dueñas , Eva Boukhris-Uzan
BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩
Article dans une revue hal-01204353v1
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An integrative method to normalize RNA-Seq data.

Cyril Filloux , Cédric Meerssemann , Romain Philippe , Lionel Forestier , Christophe C. Klopp
BMC Bioinformatics, 2014, 15 (1), pp.188. ⟨10.1186/1471-2105-15-188⟩
Article dans une revue hal-01193836v1
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Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes

Vaihiti Teaniniuraitemoana , Arnaud Huvet , Peva Levy , Christophe C. Klopp , Emeline Lhuillier
BMC Genomics, 2014, 15, pp.491. ⟨10.1186/1471-2164-15-491⟩
Article dans une revue hal-01719157v1

Attenuated sensing of SHH by Ptch1 underlies evolution of bovine limbs

Javier Lopez-Rios , Amandine Duchesne , Dario Speziale , Guillaume Andrey , Kevin A Peterson
Nature, 2014, 511 (7507), pp.46-51. ⟨10.1038/nature13289⟩
Article dans une revue hal-01193897v1
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Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken

Pierre-François Roux , Morgane Boutin , Colette Désert , Anis Djari , Diane Esquerre
PLoS ONE, 2014, 9 (10), pp.e111299. ⟨10.1371/journal.pone.0111299⟩
Article dans une revue hal-01207758v1
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RNAbrowse: RNA-Seq de novo assembly results browser.

Jérôme J. Mariette , Céline Noirot , Ibouniyamine Nabihoudine , Philippe Bardou , Claire Hoede
PLoS ONE, 2014, 9 (5), 7 p. ⟨10.1371/journal.pone.0096821⟩
Article dans une revue hal-02636622v1
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Design and characterization of a 52K SNP chip for goats

Gwenola Tosser-Klopp , Philippe Bardou , Olivier Bouchez , Cédric Cabau , Richard Crooijmans
PLoS ONE, 2014, 9, online (1), Non paginé. ⟨10.1371/journal.pone.0086227⟩
Article dans une revue hal-01019568v1
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Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Maxence Delverdier , Marie-Noêlle Lucas
Emerging Infectious Diseases, 2014, 20 (1), pp.105-108. ⟨10.3201/eid2001.130774⟩
Article dans une revue hal-02638202v1
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Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Coline Billerey , Mekki Boussaha , Diane Esquerré , Emmanuelle Rebours , Anis Djari
BMC Genomics, 2014, 15 (1), pp.499. ⟨10.1186/1471-2164-15-499⟩
Article dans une revue hal-01011303v1

High-throughput sequencing analyses of XX genital ridges lacking [i]FOXL2[/i] reveal [i]DMRT1[/i] up-regulation before [i]SOX9[/i] expression during the sex-reversal process in goats

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe C. Klopp , Aurélie Allais-Bonnet
Biology of Reproduction, 2014, 91 (6), pp.1-14. ⟨10.1095/biolreprod.114.122796⟩
Article dans une revue hal-01194038v1

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

Hans D Daetwyler , Aurelien Capitan , Hubert Pausch , Paul Stothard , Rianne van Binsbergen
Nature Genetics, 2014, 46 (8), pp.858-865. ⟨10.1038/ng.3034⟩
Article dans une revue hal-01193853v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Article dans une revue hal-01193812v1
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De Novo sequencing and transcriptome analysis for Tetramorium bicarinatum: a comprehensive venom gland transcriptome analysis from an ant species

Wafa Bouzid , Marion Verdenaud , Christophe C. Klopp , Frédéric Ducancel , Celine Noirot
BMC Genomics, 2014
Article dans une revue hal-02053589v1
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DNA methylation and transcription in a distal region upstream from the bovine alphaS1 casein gene after once or twice daily milking

Minh Nguyen , Marion Boutinaud , Barbara Petridou , Anne Gabory , Maëlle Pannetier
PLoS ONE, 2014, 9 (11), pp.1-17. ⟨10.1371/journal.pone.0111556⟩
Article dans une revue hal-01193988v1
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High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

Emilie E. Chancerel , Jean-Baptiste J.-B. Lamy , Isabelle Lesur Kupin Lesur , Celine C. Noirot , Christophe C. Klopp
BMC Biology, 2013, 11, 19 p. ⟨10.1186/1741-7007-11-50⟩
Article dans une revue hal-00964786v1
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Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Christophe C. Klopp
FEMS Microbiology Ecology, 2013, 83 (2), pp.504-514. ⟨10.1111/1574-6941.12011⟩
Article dans une revue hal-02648977v1
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Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2

Sebastien S. Fritz , Aurelien A. Capitan , Anis Djari , Sabrina S. Rodriguez , Anne Barbat
PLoS ONE, 2013, 8, online (6), Non paginé. ⟨10.1371/journal.pone.0065550⟩
Article dans une revue hal-01000118v1
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Novel insights into the bovine polled phenotype and horn ontogenesis in Bovidae

Aurélie Allais-Bonnet , Cécile Grohs , Ivica I. Medugorac , Stefan S. Krebs , Anis Djari
PLoS ONE, 2013, 8, online (5), Non paginé. ⟨10.1371/journal.pone.0063512⟩
Article dans une revue hal-01000794v1

Whole-genome, deep pyrosequencing analysis of a duck influenza A virus evolution in swine cells

Vincent Bourret , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Olivier O. Bouchez
Infection, Genetics and Evolution, 2013, 18, pp.31 - 41. ⟨10.1016/j.meegid.2013.04.034⟩
Article dans une revue hal-02646502v1
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Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing

Anis Djari , Diane D. Esquerre , Bernard B. Weiss , Frédéric Martins Martins , Cédric Meerssemann Meersseman
BMC Genomics, 2013, 14, online (may), Non paginé. ⟨10.1186/1471-2164-14-307⟩
Article dans une revue hal-01001073v1
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Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

Saneyoshi Ueno , Christophe C. Klopp , Jean-Charles Leplé , Jérémy Derory , Céline Noirot
BMC Genomics, 2013, 14, 15 p. ⟨10.1186/1471-2164-14-236⟩
Article dans une revue hal-02650124v1

An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss

Ayaka Yano , René R. Guyomard , Barbara B. Nicol , Elodie Jouanno , Edwige Quillet
Current Biology - CB, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩
Article dans une revue hal-01000319v1

Field Monitoring of Avian Influenza Viruses: Whole-Genome Sequencing and Tracking of Neuraminidase Evolution Using 454 Pyrosequencing

Guillaume Croville , Sébastien Soubies , Johanna Barbieri , Christophe C. Klopp , Jérôme J. Mariette
Journal of Clinical Microbiology, 2012, 50 (9), pp.2881-2887. ⟨10.1128/JCM.01142-12⟩
Article dans une revue hal-02651716v1

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato , Satoshi Tabata , Hideki Hirakawa , Erika Asamizu , Kenta Shirasawa
Nature, 2012, 485 (7400), pp.635-641. ⟨10.1038/nature11119⟩
Article dans une revue hal-02651748v1
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Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Article dans une revue hal-01205069v1

Genome sequences of three Leuconostoc Citreum Strains, LBAE C10, LBAE C11, and LBAE E16, isolated from wheat sourdoughs

Sandrine Laguerre , Myriam Amari , Marlène Vuillemin , Hervé Robert , Valentin Loux
Journal of Bacteriology, 2012, 194 (6), pp.1610-1611. ⟨10.1128/JB.06789-11⟩
Article dans une revue hal-01267778v1

The tomato genome sequence provides insights into fleshy fruit evolution

Shusei Sato , Satoshi Tabata , Hideki Hirakawa , Erika Asamizu , Kenta Shirasawa
Nature, 2012, 485 (7400), pp.635-641. ⟨10.1038/nature11119⟩
Article dans une revue hal-04198562v1
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Genome sequence of weissella confusa LBAE C39-2, isolated from a wheat sourdough

Myriam Amari , Sandrine Laguerre , Marlène Vuillemin , Hervé Robert , Valentin Loux
Journal of Bacteriology, 2012, 194 (6), pp.1608-1609. ⟨10.1128/JB.06788-11⟩
Article dans une revue hal-01267779v1
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A 3.7 Mb deletion encompassing ZEB2 causes a novel polled and multisystemic syndrome in the progeny of a somatic mosaic bull

Aurelien Capitan , Aurélie Allais-Bonnet , Alain Pinton , Brigitte Marquant-Le Guienne , Daniel Le Bourhis
PLoS ONE, 2012, 7, online (11), Non paginé. ⟨10.1371/journal.pone.0049084⟩
Article dans une revue hal-01019835v1
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Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail

Laure Fresard , Sophie Leroux , Patrice Dehais , Bertrand Servin , Hélène Gilbert
BMC Genomics, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-551⟩
Article dans une revue hal-01129669v1
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NG6: Integrated next generation sequencing storage and processing environment.

Jérôme J. Mariette , Frédéric Escudié , Nicolas Allias , Gérald Salin , Céline Noirot
BMC Genomics, 2012, 13 (1), pp.462. ⟨10.1186/1471-2164-13-462⟩
Article dans une revue inserm-00733481v1
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Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota.

Matteo Serino , Elodie Luche , Sandra Gres , Audrey Baylac , Mathieu Bergé
Gut, 2012, 61 (4), pp.543-53. ⟨10.1136/gutjnl-2011-301012⟩
Article dans une revue inserm-00726182v1

Pyrosequencing-based transcriptomic resources in the pond snail Lymnaea stagnalis, with a focus on genes involved in molecular response to diquat-induced stress

Anthony Bouetard , Celine Noirot , Anne-Laure Besnard , Olivier Bouchez , Damien Choisne
Ecotoxicology, 2012, 21 (8), pp.2222-2234. ⟨10.1007/s10646-012-0977-1⟩
Article dans une revue hal-01210141v1
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RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

Emilie Villar , Christophe C. Klopp , Céline Noirot , Evandro Novaes , Matias Kirst
BMC Genomics, 2011, 12, pp.1-18. ⟨10.1186/1471-2164-12-538⟩
Article dans une revue hal-02645044v1
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SigReannot-mart: a query environment for expression microarray probe re-annotations.

François Moreews , Gaelle Rauffet , Patrice Dehais , Christophe C. Klopp
Database - The journal of Biological Databases and Curation, 2011, 2011, pp.bar025. ⟨10.1093/database/bar025⟩
Article dans une revue inria-00638684v1
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Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR

Saneyoshi Ueno , Christophe C. Klopp , Céline Noirot , Valérie V. Léger , Elodie Prince
BMC Proceedings, 2011, 5 (Suppl. 7), pp.1-2. ⟨10.1186/1753-6561-5-S7-P20⟩
Article dans une revue hal-02641988v1
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Strengthening insights into host responses to mastitis infection in ruminants by combining heterogeneous microarray data sources

Sem Genini , Bouabid Badaoui , Gert Sclep , Stephen Bishop , Dave Waddington
BMC Genomics, 2011, 12 (1), pp.225. ⟨10.1186/1471-2164-12-225⟩
Article dans une revue inserm-00601542v1

Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept.

Jacques Amar , Matteo Serino , Cécile Lange , Chantal Chabo , Jason Iacovoni
Diabetologia, 2011, 54 (12), pp.3055-61. ⟨10.1007/s00125-011-2329-8⟩
Article dans une revue inserm-00801269v1
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Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool

Jérôme J. Mariette , Céline Noirot , Christophe C. Klopp
BMC Research Notes, 2011, 4 (149), pp.1 - 4. ⟨10.1186/1756-0500-4-149⟩
Article dans une revue hal-02641837v1
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Deciphering cork formation in Quercus suber

Jorge A.P. Paiva , Pedro Fevereiro , Pedro Marques , José Carlos Rodrigues , Grégoire G. Le Provost
BMC Proceedings, 2011, 5 (Suppl 7), pp.172
Article dans une revue hal-02649545v1
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Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

Lena Tasse , Juliette Bercovici , Sandra Pizzut-Serin , Patrick Robe , Julien Tap
Genome Research, 2010, 20 (11), pp.1605 - 1612. ⟨10.1101/gr.108332.110⟩
Article dans une revue hal-01204274v1
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Non PCR-amplified transcripts and AFLP® fragments as reduced representations of the quail genome for 454 Titanium sequencing

Sophie Leroux , Katia Feve , Florence Vignoles , Olivier Bouchez , Christophe C. Klopp
BMC Research Notes, 2010, 3, online (july), Non paginé. ⟨10.1186/1756-0500-3-214⟩
Article dans une revue hal-01129412v1
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Saneyoshi Ueno , Grégoire Le Provost , Valérie Léger , Christophe C. Klopp , Céline Noirot
BMC Genomics, 2010, 11, pp.650. ⟨10.1186/1471-2164-11-650⟩
Article dans une revue hal-00645933v1
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sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters.

Casel Pierrot , François Moreews , Christophe C. Klopp
BMC Proceedings, 2009, 3 (4), pp.1-5. ⟨10.1186/1753-6561-3-S4-S3⟩
Article dans une revue inria-00435746v1
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The EADGENE and SABRE post-analyses workshop

Florence Jaffrezic , Jakob Hedegaard , Magali San Cristobal , Christophe C. Klopp , Dirk-Jan de Koning
BMC Proceedings, 2009, 3, online (suppl. 4), Non paginé. ⟨10.1186/1753-6561-3-S4-I1⟩
Article dans une revue hal-01193449v1
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Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

Elodie Fleury , Arnaud Huvet , Christophe Lelong , Julien de Lorgeril , Viviane Boulo
BMC Genomics, 2009, 10 (341), pp.341. ⟨10.1186/1471-2164-10-341⟩
Article dans une revue inria-00435769v1
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Transcriptome profiling of the feeding-to-fasting transition in chicken liver.

Colette Désert , Michel Jacques M.J. Duclos , Pierre Blavy , Frédéric Lecerf , François Moreews
BMC Genomics, 2008, 9 (611), pp.611. ⟨10.1186/1471-2164-9-611⟩
Article dans une revue hal-00729919v1
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Improvement of the Bos taurus Genome Assembly using New Sequencing Technologies

Camille Eché , Carole Iampietro , Clement Birbes , Andreea Dreau , Claire Kuchly
Discoveries Roadshow 2023 - PacBio, PacBio, May 2023, Paris, France
Communication dans un congrès hal-04096124v1

A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47
Communication dans un congrès hal-04217589v1

RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !

Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte
World Poultry Congress (WPC) 2022, Aug 2022, Paris, France
Communication dans un congrès hal-04258396v1
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A yeast product improves the efficiency of a processed animal protein diet in rainbow trout by modulating the gut response

Laura Frohn , Sandrine Skiba-Cassy , Frédéric Terrier , Pierre Aguirre , Cervin Guyomar
International Symposium of Fish Nutrition and Feeding, ISFNF, Jun 2022, Sorrento, Italy
Communication dans un congrès hal-04311746v1
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UN EXTRAIT DE LEVURE AMELIORE L'EFFICACITE D'UN REGIME A BASE DE PROTEINES ANIMALES TRANSFORMEES CHEZ LA TRUITE ARC-EN-CIEL ET MODULE LA REPONSE INTESTINALE

Laura Frohn , Sandrine Skiba-Cassy , Frédéric Terrier , Pierre Aguirre , Cervin Guyomar
7èmes Journées de la Recherche Piscicole, ITAVI, Jul 2022, Paris, France
Communication dans un congrès hal-04311786v1
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Cellules germinales primordiales aviaires au cœur des avancées de la conservation des ressources génétiques et de l’édition des génomes. L’exemple français

Amélie Juanchich , Sabine Alves , Jacky Ezagal , Maria Bernard , Christophe Klopp
14. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2022, Tours, France. pp.115-123
Communication dans un congrès hal-04275281v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
Genotoul Biostat Bioinfo Day, Dec 2022, Castanet-Tolosan, France
Communication dans un congrès hal-03957296v1

RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression

Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte
26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405
Communication dans un congrès hal-04132375v1

In search of the honey bee centromeres: regions with tandem repeats high at content and low recombination rates

Alain Vignal , Sonia E Eynard , Christophe C. Klopp , Bertrand Servin , Kamila Canale-Tabet
9th European Congress of Apidology, Sep 2022, Belgrade, Serbia
Communication dans un congrès hal-03855207v1
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French avian cryobank: development of reproductive biotechnologies based on primordial germ cells (PGCs) and investigation of the impact of in vitro steps on PGCs integrity and reproductive capacity

Marina Govoroun , Sabine Alves , Laura Soler-Vasco , Sophie Fouchécourt , Nadine Gérard
26è World's Poultry Congress,, May 2022, Webinar, France
Communication dans un congrès hal-04276115v1

The invasive hornet Vespa velutina carries both honey bee viruses and new viruses

Anne Dalmon , Philippe Gayral , Damien Decante , Christophe C. Klopp , Diane Bigot
52nd Annual Meeting of the Society for Invertebrate Pathology, 2021, Valencia, Spain
Communication dans un congrès hal-03526230v1
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European Honeybee Subspecies Genomes at the Individual and Population Levels

Alain Vignal , Benjamin Basso , Kaspar Bienefeld , Kamila Canale-Tabet , Cecilia Costa
Plant and Animal Genome, Sep 2020, San-Diego, United States
Communication dans un congrès hal-02938071v1

Deciphering the molecular mechanisms of pesticide tolerance of the soil engineer biodiversity

Audrey Barranger , Christophe C. Klopp , Barbara Le Bot , Gaëlle Saramito , Régis Lavigne
SETAC Europe 30th Annual Meeting, SETAC, May 2020, Dublin, Ireland
Communication dans un congrès hal-03028275v1
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Frédéric Jehl , Kévin Muret , Maria Bernard , Diane Esquerré , Hervé Acloque
PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States
Communication dans un congrès hal-02790912v1

Identification of Long Non-Coding RNAs Linked to Parasite Host Immune Response in Sheep

Aroa Suárez-Vega , Samantha Dixon , Niel A Karrow , Paula Menzies , Bonnie A. Mallard
PAG XXVII - Plant and Animal Genome Conference, Jan 2019, San Diego, United States
Communication dans un congrès hal-02786968v1

Tolerance of soil engineer to pesticide residual contamination in agrosystems: an omic strategy for studying the molecular mechanisms at play.

Audrey Barranger , Emmanuelle Com , Christophe C. Klopp , Françoise Binet
5e Colloque de Génomique environnementale, Oct 2019, La Rochelle, France
Communication dans un congrès hal-03028351v1
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Sex chromosome evolution in Poeciliid fish

Manfred Schartl , Romain Feron , Alvaro Santacruz Roco , Susanne Kneitz , Verena A. Kottler
Paradigm shift in sex chromosome evolution, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB). DEU., Sep 2019, Berlin, Germany. 42 p., ⟨10.4126/FRL01-006417884⟩
Communication dans un congrès hal-02736598v1

Sauropsida ribosomal repeat : Deciphering of the intergenic spacer in chicken and terrapin

Alexander Dyomin , Svetlana Galkina , Valerie Fillon , Stephane Cauet , Celine Lopez-Roques
37. International Society for Animal Genetics Conference (ISAG), Jul 2019, Lleida, Spain
Communication dans un congrès hal-02786983v1

Difficulties to compare egg quality: insights from a transcriptomic analysis

Taina Rocha de Almeida , Julien Bobe , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62
Communication dans un congrès hal-02282230v1

Transcriptomic profiling reveals novel biomarkers of egg quality in domesticated pikeperch, Sander lucioperca

Daniel Zarski , Joanna Nynca , Aurélie Le Cam , Christophe C. Klopp , Sławomir Ciesielski
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.69-70
Communication dans un congrès hal-02282331v1

Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcripts

D. Żarski , Aurélie Le Cam , J. Nynca , Christophe C. Klopp , S. Ciesielski
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p
Communication dans un congrès hal-02317179v1

Le projet mille génomes gallus : comment partager les données de séquences pour mieux les utiliser

Michèle Tixier-Boichard , Frédéric Lecerf , Philippe Bardou , Christophe C. Klopp
13.Journées de la recherche avicole et des palmipèdes à foie gras, Mar 2019, Tours, France
Communication dans un congrès hal-02737429v1

Integrated metabolomic and transcriptomic analysis evaluating heat and feed stress in layer chickens

Denis Laloë , Frédéric Jehl , Colette Désert , Morgane Boutin , Sophie Leroux
37. International Society for Animal Genetics (ISAG) Conference, Jul 2019, Lleida, Spain
Communication dans un congrès hal-02737948v1

The invasive hornet Vespa velutina carries both honey bee viruses and new viruses

Anne Dalmon , Philippe Gayral , Damien Decante , Christophe C. Klopp , Diane Bigot
30ème Congrès UIEIS - Insectes Sociaux - Section Française, Aug 2019, Avignon, France
Communication dans un congrès hal-02788783v1

Analysis of whole genome sequence data on a tropical admixed cattle breed: the creole cattle of Guadeloupe.

Gabrièle Adam , Diane Esquerre , Olivier Bouchez , Philippe Bardou , Christophe C. Klopp
Caribbean Science ans Innovation Meeting 2019, Oct 2019, Pointe-à-Pitre (Guadeloupe), France
Communication dans un congrès hal-02423161v1
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Sex determination diversity in fish

M. Adolfi , Anabel Martinez-Bengochea , A.S. Roco , V. Kottler , - Du, K.
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p
Communication dans un congrès hal-02737595v1

Transcriptomics data of liver and adipose tissue highlight lncRNAs as candidates for the lipid metabolism regulation in broilers

Kévin Muret , Christophe C. Klopp , Diane Esquerre , Morgane Boutin , Colette Désert
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States
Communication dans un congrès hal-01860010v1
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An integrated information system dedicated to oak genomics and genetics

Joëlle Amselem , Nicolas Francillonne , Célia Michotey , Thomas Letellier , Jean-Marc Aury
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Communication dans un congrès hal-01839185v1
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Genome-wide study of structural variants in French dairy and beef breeds

Didier Boichard , Mekki Boussaha , Cécile Grohs , Rabia Letaief , Sebastien Fritz
69. Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2018, Dubrovnik, Croatia
Communication dans un congrès hal-02736390v1

Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

Fanny Mondet , Andrea Rau , Christophe C. Klopp , Marine Rohmer , Dany Severac
Eurbee 2018 : 8th European Conference of Apidology, Sep 2018, Gent, Belgium
Communication dans un congrès hal-02785629v1

De novo genome assembly of a western European Apis mellifera mellifera black bee

Alain Vignal , Sonia Eynard , Christophe C. Klopp , Kamila Canale-Tabet , William Marande
8. Congress of Apidology (EurBee 8), Sep 2018, Ghent, Belgium
Communication dans un congrès hal-02785743v1

Etude multi-sites du transcriptome de dreissenidés : quels motifs de réponses ?

Romain Péden , Bénédicte Sohm , Marine Potet , Justine Flayac , Pascal Poupin
Congrès de la Société d'Ecotoxicologie Fondamentale et Appliquée, Jun 2018, Montpellier, France
Communication dans un congrès hal-03172353v1

Improving the knowledge of microchromosome repeated sequences in chicken by the sequencing of BAC clones with Pacific Bio technology

Valerie Fillon , Christophe C. Klopp , Yvette Lahbib Mansais , Noémie Thébault , Celine Lopez-Roques
23. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jun 2018, Saint-Petersburg, Russia. 360 p
Communication dans un congrès hal-02733811v1
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Layers response to a suboptimal diet through phenotype and transcriptome changes in four tissues

Frédéric Jehl , M. Brenet , Andrea Rau , Colette Désert , Morgane Boutin
69. Annual Meeting of the European Association of Animal Production, Aug 2018, Dubrovnik, Croatia
Communication dans un congrès hal-02734608v1
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Genome-wide approaches to elucidate evolution of sex determination systems and sex determining genes in fish

Qiaowei Pan , Romain Feron , Elodie Jouanno , Ming Wen , Boudjema Imarazene
8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States
Communication dans un congrès hal-02733991v1

In grafted grapevines, physiological, transcriptional and hormonal responses to nutrient availability are strongly influenced by the rootstock genetic background

Noe Cochetel , Antoine Gauthier , Eloïse Meteier , Isabelle Merlin , Cyril Hevin
12. International Conference on Grapevine Breeding and Genetics (ICGBG), Jul 2018, Bordeaux, France. 306 p
Communication dans un congrès hal-02736860v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac
8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States
Communication dans un congrès hal-01607208v1

Liver and whole blood transcriptome response to chronic heat exposure in laying hens

Frédéric Jehl , Andrea Rau , Colette Désert , Morgane Boutin , Kévin Muret
36. International Conference on Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. pp.15
Communication dans un congrès hal-02463163v1

GENESEA : développement de la sélection génomique chez le bar et la daurade

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Christophe C. Klopp , Aline Bajek
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Communication dans un congrès hal-03156734v1

Expression de gènes dans le foie de canards nourris ad libitum ou gavés

Frédéric Herault , Magalie Houee , Elisabeth Baéza , Olivier Bouchez , Diane Esquerre
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France
Communication dans un congrès hal-01595082v1
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MINTIA : Metagenomic INserT BIoinformatic Annotation in Galaxy

Sandrine Laguerre , Sarah Maman , Sabrina Legoueix , Elisabeth Laville , Gabrielle Veronese
16th European Conference on Computational Biology, Jul 2017, Prague, Czech Republic
Communication dans un congrès hal-01886424v1

Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France
Communication dans un congrès hal-01594642v1

Oak genome sequencing and evolution

Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741698v1

Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
19. European Testis Workshop, Jun 2016, Saint-Malo, France
Communication dans un congrès hal-02742995v1

The route to the development of basal stem rot resistance in oil palm (Elaeis guineensis) via the discovery of lignin degradation process in the pathogen Ganoderma boninense

Joon Sheong Tan , Yang Ping Lee , S. Sulaiman , L. Camus-Kulandaivelu , Christophe C. Klopp
International Symposia on Tropical and Temperate Horticulture (ISTTH), Nov 2016, Cairns, Australia. pp.12, ⟨10.17660/ActaHortic.2018.1205.42⟩
Communication dans un congrès hal-02736945v1

Annotation of the oak genome sequence and associated bioinformatic resources

Joelle J. Amselem , Jean Marc Aury , Nicolas Francillonne , Tina Alaeitabar , Corinne da Silva
IUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741128v1

Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Jouanno
7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States
Communication dans un congrès hal-02741864v1

Applicaciones de nuevas herramientas moleculares en el ganado Creole de Guadeloupe

Michel Naves , Mathieu Gautier , Diane Esquerre , Christophe C. Klopp , Fabienne Tessiot
XVI. Simposio Iberoamericano sobre conservacion y utilizacion de recursos zoogeneticos, Oct 2015, Villavicencio, Colombia
Communication dans un congrès hal-02962027v1
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DMRT1 turns on testicular differentiation during XX sex-reversal in the goat

Maeva El Zaiat , Luc Jouneau , Dominique Thepot Thépot , Christophe C. Klopp , Aurélie Allais-Bonnet
18. European Testis Workshop, May 2014, Elsinore, Denmark. 1 p
Communication dans un congrès hal-01193822v1
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Rapid discovery of mutations responsible for sporadic dominant genetic defects in livestock using genome sequence data: enhancing the value of farm animals as model species

Aurelien Capitan , Pauline Michot , François Guillaume , Cécile Grohs , Anis Djari
10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada
Communication dans un congrès hal-01193912v1
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Identification de gènes différentiellement exprimés dans deux tissus cibles de lignées clonales de truite sensibles ou résistantes à la SHV

Carine Genet , E.R. Verrier , Céline Ciobotaru , Christophe C. Klopp , Diane Esquerre
Séminaire du Département de Génétique animale, Apr 2014, Fréjus, France. 1 p
Communication dans un congrès hal-01193891v1
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Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
Eel genome symposium 2014, Jan 2014, Leiden, Netherlands
Communication dans un congrès hal-02743789v1

Rna-seq analysis of transcriptome response to VHS-V infection in two target tissues of resistant vs susceptible trout clonal lines

Carine Genet , E.R. Verrier , Céline Ciobotaru , Christophe C. Klopp , Diane Esquerre
10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada
Communication dans un congrès hal-01194071v1
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Combining Genetics Mapping, Selective Sweeps, Genome Re-Requencing and Allele Specific Expression Reveals Several Serious Causative Genes for QTL Regions

Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Colette Désert
International Plant & Animal Genome XXII (PAG), Jan 2014, San Diego, United States
Communication dans un congrès hal-01193794v1
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An avian coronavirus associated with fulminating disease of guinea fowl

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Maxence Delverdier , Marie-Noêlle Lucas
8th International Symposium on Avian Corona- and Metapneumoviruses and Complicating Pathogens, 2014, Rauishozhausen, Germany
Communication dans un congrès hal-02740721v1

An avian coronavirus associated with fulminating disease of guinea fowl

Mariette Ducatez , Etienne Liais , Guillaume Croville , Léni Corrand , Maxence Delverdier
1st Annual COST Action FA1207 meeting, 2013, Germany
Communication dans un congrès hal-02805928v1
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Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data

Pierre-François Roux , Yuna Blum , Colette Désert , Anis Djari , Diane Esquerre
64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300
Communication dans un congrès hal-01019609v1

La monotraite induit la méthylation d'une région régulatrice distale en amont du gène de la caséine- S1

Minh Nguyen , Marion Boutinaud , Barbara Petridou , Sophie Chat , Stephan Bouet
20. Rencontres autour des Recherches sur les Ruminants, Institut de l'Elevage (IDELE). FRA. Institut National de la Recherche Agronomique (INRA)., Dec 2013, Paris, France. pp.79-81
Communication dans un congrès hal-01019187v1
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Using NGS data to characterize genetics of meet-type and egg-type chicken lines

Pierre-François Roux , Frédéric Lecerf , Anis Djari , Diane Esquerre , Sylvain Marthey
64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296
Communication dans un congrès hal-01019218v1

An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish family

Ayaka Yano , René Guyomard , Barbara Nicol , Elodie Jouanno , Edwige Quillet
Conférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France
Communication dans un congrès hal-01194065v1
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Concordance analysis: from QTL to candidate causative mutations

Irene van den Berg , Sebastien Fritz , Anis Djari , Diane Esquerre , Christophe C. Klopp
64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes, France. pp.234
Communication dans un congrès hal-01190502v1

LncRNA expression and increased DNA methylation in a distal region upstream from the alphaS1 casein gene after once daily milking

Minh M. Nguyen , Marion Boutinaud , Madia Charlier , Anne Gabory , Laurent Galio
Conférences Jacques Monod "DNA methylation and demethylation", Centre National de la Recherche Scientifique (CNRS). FRA., Sep 2013, Roscoff, France
Communication dans un congrès hal-01001076v1
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Identification of five novel mutations responsible for prenatal mortality in dairy cattle

Sebastien Fritz , Aurelien Capitan , Anis Djari , Sabrina Rodriguez , Anne Barbat
International Plant & Animal Genome XXI, Jan 2013, San Diego, CA, United States
Communication dans un congrès hal-01019848v1

Analyse de transcriptomes de foies de canards par séquençage d’ARN (RNA-Seq)

Christian Diot , Magalie Houee , Olivier Demeure , Elisabeth Baéza , Alain Vignal
10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, La Rochelle., Mar 2013, La Rochelle, France
Communication dans un congrès hal-01210404v1

Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte

Pierre-François Roux Roux , Frédéric Lecerf , Anis Djari , Diane D. Esquerre , Sylvain S. Marthey
10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561
Communication dans un congrès hal-01000659v1

CHIPSTRAFFIC : identification des gènes cibles de facteurs de transcription bovins par ChIP et ChIP-seq dans l'endomètre et les tissus extra-embryonnaires à l'implantation

Anais Carvalho , Geneviève Jolivet , Kamelia Kara-Ali , Caroline Eozenou , Corinne Giraud-Delville
Séminaire de restitution AIP Bioressources, Institut National de Recherche Agronomique (INRA). US Etude du Polymorphisme des Génomes Végétaux (1279)., Feb 2013, Paris, France. pp.106-108
Communication dans un congrès hal-01019203v1

Analyse à grande échelle des ARN non codants longs exprimés au cours de la différenciation gonadique chez le bovin

Maëlle Pannetier , Luc Jouneau , Christophe C. Klopp , Denis Laloë , Maeva El Zaiat
Journées d'Animation Scientifique Phase 2013, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Oct 2013, Paris, France. pp.1-2
Communication dans un congrès hal-01019564v1

LncRNA expression and increased DNA methylation in a distal region upstream from the alphaS1 casein gene after once daily milking

Minh M. Nguyen , Marion Boutinaud , Madia Charlier , Anne Gabory , Laurent Galio
International Plant and Animal Genome XXI, Scherago International Inc. Jersey City, NJ, USA., Jan 2013, San Diego, United States
Communication dans un congrès hal-01000385v1
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Identification of six mutations responsible for prenatal mortality in dairy cattle

Didier Boichard , Aurelien Capitan , Anis Djari , S.C. Rodriguez , Anne Barbat
64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes, France. pp.231
Communication dans un congrès hal-01190515v1

Genome-wide analysis of long non-coding RNAs expression during gonad differentiation in bovine

Maëlle Pannetier , Luc Jouneau , Christophe C. Klopp , Denis Laloë , Maeva M. El Zaiat
EMBL Symposia The non coding genome, EMBO. DEU., Oct 2013, Heidelberg, Germany. 1 p
Communication dans un congrès hal-01004536v1
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Ouverture d'un service d'autoformation en ligne : Pour se former en fonction de ses besoins du moment.

Sarah Maman Haddad , Christophe C. Klopp
JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, 2013, Toulouse, France. 3p
Communication dans un congrès hal-02810078v1
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Identification de QTL associés à de la mortalité embryonnaire chez les bovins laitiers

Sébastien Fritz , Aurelien Capitan , Anis Djari , Cécile Grohs , Mekki Boussaha
20. Rencontres autour des Recherches sur les Ruminants, Dec 2013, Paris, France. pp.145-148
Communication dans un congrès hal-01189868v1

Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects

Gwenola Tosser-Klopp , Cédric Cabau , Andre Eggen , Thomas Faraut , Henri Heuven
20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives
Communication dans un congrès hal-01019243v1
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Molecular detection and characterization of duck respiratory viruses using unbiased high-throughput sequencing

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Fabrice Lagoutte
ESVV 2012, european society for veterinary virology (ESVV)., Sep 2012, Madrid, Spain
Communication dans un congrès hal-01191333v1

Transcriptome analysis of expressed sequence tags (ESTs) from the venom glands of the ant species Tetramorium bicarinatum (Hymenoptera: Formicidae)

W. Bouzid , Christophe C. Klopp , A. Vetillard
20th Meeting of the French-Society-of-Toxinology (SFET), Dec 2012, Paris, France. pp.2, ⟨10.1016/j.toxicon.2013.08.018⟩
Communication dans un congrès hal-02746574v1

Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés

Ayaka Yano , René R. Guyomard , Elodie Jouanno , Barbara B. Nicol , Christophe C. Klopp
3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109
Communication dans un congrès hal-01000327v1

New insights on sex determination in salmonids

Ayaka Yano , René Guyomard , Elodie Jouanno , Barbara Nicol , Edwige Quillet
6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45
Communication dans un congrès hal-01019433v1

Development of genomic resources to study the structure, function and evolution of the oak genome

Christophe Plomion , Joelle J. Amselem , Jean-Marc Aury , Catherine Bodenes , Emilie Chancerel
IUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès hal-01019850v1

SUBERGENE: Developing genomics resources for cork-oak (Q. suber L.)

Jorge Almiro Paiva , Pedro Fevereiro , Pedro Marques , José Carlos Rodrigues , Grégoire G. Le Provost
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 2 p
Communication dans un congrès hal-02809590v1

GENIDOV: Gene network involved in ovarian development in goat and mouse

Eric Pailhoux , Maëlle Pannetier , Dominique Thepot Thépot , Geneviève Jolivet , Ikrame Naciri
9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. 1 p
Communication dans un congrès hal-01193796v1

New insights into sex differentiation and determination for a better sex control in salmonids

Ayaka Yano , Barbara B. Nicol , René R. Guyomard , Elodie Jouanno , Edwige Quillet
Aqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic
Communication dans un congrès hal-02744513v1

Involvment of [i]DMRT1[/i] in XX sex-reversed polled goats

Maeva Elzaiat , Dominique Thepot Thépot , Luc Jouneau , Aurélie Allais-Bonnet , Christophe C. Klopp
6. International Symposium on the Biology of Vertebrate Sex Determination, Vertebrate-biosex. USA., Apr 2012, Kona, Hawai, United States. 1 p
Communication dans un congrès hal-01019618v1

Sequencing and analysis of the oak transcriptome using RNA-seq technologies

Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenmann , Céline Noirot
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès hal-02806071v1

Identification of genes involved in bud dormancy in sessile oak (Quercus petraea Matt. Liebl) using RNA-seq

Grégoire G. Le Provost , Ueno Saneyoshi , Christophe C. Klopp , Jean-Charles Leplé , Jérémy Derory
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès hal-02809075v1

Long non-coding RNAs and sex-differentiating genes in bovines

Maeva El Zaiat , Christophe C. Klopp , Luc Jouneau , Olivier Sandra , Eve Devinoy
1.Course on non coding genome, Institut Curie. Paris, FRA., Jun 2012, Paris, France. 1 p
Communication dans un congrès hal-01019018v1
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Détection moléculaire et caractérisation de virus respiratoires du canard par une approche de séquençage à haut débit

Etienne Liais , Guillaume Croville , Jérôme J. Mariette , Christophe C. Klopp , Cécile Donnadieu
Journée SEVAB, Nov 2012, Toulouse, France
Communication dans un congrès hal-01191337v1

DNA methylation and ncRNA transcription at aCSN1S1 regulatory region in the bovine mammary gland

Minh Nguyen , Stephan Bouet , Marion Boutinaud , Barbara Petridou , Frederic Dessauge
9.International Symposium on Milk Genomics and Human Health, International Milk Genomics Consortium (IMGC). Davis, USA., Oct 2012, Wageningen, Netherlands. pp.1
Communication dans un congrès hal-01455867v1

MEETAC - Valorisation des données transcriptomiques bovines à l’interface mère-embryon pour une compréhension intégrée de l’implantation

Olivier Sandra , Christophe C. Klopp , Jean-François Gibrat , Claire Ponsart , Maria-Céleste Le Bourhis
9. Colloque Agenae / ANR, Colloque Génomique Animale et Microbienne, AGENAE - Analyse du Génome des Animaux d'Elevage (AGENAE). FRA., Mar 2012, La Rochelle, France. pp.90
Communication dans un congrès hal-02747630v1
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Towards a high density SNP International Goat Chip

Gwenola Tosser-Klopp , Abdullah Johari Jiken , Philippe Bardou , Cédric Cabau , Patrice Dehais
Plant and Animal Genome, Jan 2011, San Diégo, United States
Communication dans un congrès hal-01194170v1

Développement de SNP chez la caille par séquençage haut-débit

Sophie S. Leroux , Katia K. Feve , Florence F. Vignoles , Olivier O. Bouchez , Laure Frésard
9. Journées de la Recherche Avicole, Mar 2011, Tours, France
Communication dans un congrès hal-02750356v1
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Diversité et biologie intégrative : des pistes à explorer pour combler le gap entre diversité génétique et diversité phénotypique

Magali San Cristobal , Simon S. Boitard , Marcel M. Bouffaud , Cécile Canlet , Leonor L. Chaltiel
COLLOQUE FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France
Communication dans un congrès hal-01000087v1
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Maritime pine (Pinus pinaster) de novo transcriptome assembly

Philippe Label , Céline Noirot , Grégoire G. Le Provost , María-Teresa Cervera , Christophe Plomion
3. workshop on "Statistical challenges on the 1000€ genome sequences in plants";StatSeq'2011, Apr 2011, Toulouse, France
Communication dans un congrès hal-02750183v1

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier O. Bouchez , Cédric Cabeau , Olivier Kah
Animation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France
Communication dans un congrès hal-02747070v1

Characterization of a microbiota of intestinal origin in white adipose tissue and stroma vascular fraction from healthy and patients according to their BMI

M. M. Serino , E. E. Luche , P. P. Klopp , C. C. Chabo , Olivier O. Bouchez
Congrès de la Société Francophone du Diabète, Mar 2011, Genève, Switzerland. pp.A32
Communication dans un congrès hal-01001551v1

Pyroséquençage pour le développement d'EST et de SNP (PYRESAVI) chez le canard

Frederique Pitel , Sophie S. Leroux , Katia K. Feve , Florence F. Vignoles , Cécile C. Duby
9. Journées de la Recherche sur les Palmipèdes à Foie Gras, Oct 2010, Bordeaux, France
Communication dans un congrès hal-02758288v1

Analysis of expressed sequence tags in maritime pine (Pinus pinaster Aiton)

Grégoire G. Le Provost , Jean-Marc Frigerio , Philippe Chaumeil , Saneyoshi Ueno , Camille Lepoittevin
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Communication dans un congrès hal-02758480v1

Bioinformatic analysis of Sanger and 454 ESTs in oak

Saneyoshi S. Ueno , Grégoire G. Le Provost , Valérie V. Léger , Christophe C. Klopp , Celine C. Noirot
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain. pp.73
Communication dans un congrès hal-00964385v1

Development of polymorphic markers in quail by new generation sequencing

Florence Vignoles , Katia Feve , Sophie Leroux , David Gourichon , Christine Leterrier
13. European Poultry Conference (EPC 2010), Aug 2010, Tours, France
Communication dans un congrès hal-01193587v1

Meetac - Valorisation des données transcriptomiques bovines à l’interface mère-embryon pour une compréhension intégrée de l’implantation (2009-2012)

Olivier Sandra , Isabelle Hue , Jean-François Gibrat , Christophe C. Klopp , Claire Ponsart
8. Journées AGENAE, Nov 2010, Bordeaux, France
Communication dans un congrès hal-02752240v1

Transcriptome analysis of bud dormancy in sessile oak (Quercus petraea (Matt.) Libel.) by 454 pyrosequencing

Saneyoshi Ueno , Grégoire G. Le Provost , Céline Noirot , Christophe C. Klopp , Antoine Kremer
Conference on Forest Ecosystem Genomics and Adaptation, Jun 2010, Madrid, Spain
Communication dans un congrès hal-02753292v1
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Pyroséquençage pour le développement d'EST et de SNP aviaires

Frederique Pitel , Alain Vignal , Sophie Leroux , Katia Feve , Florence Vignoles
8èmes Journées de la Recherche Avicole, Mar 2009, Paris (FR), France. pp.594-598
Communication dans un congrès hal-00730058v1

Détection de SNP dans l'espèce caprine, un premier pas vers la génomique

Isabelle Palhiere Palhière , Carole Moreno-Romieux Moreno , Christophe C. Klopp , Virginie Clément , C. Lecomte
16. Rencontres Recherches Ruminants, Dec 2009, Paris, France
Communication dans un congrès hal-02755104v1

Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins

Carole Moreno-Romieux Moreno , Bertrand Servin , Thomas Faraut , Christophe C. Klopp , Rachel Rupp
16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France
Communication dans un congrès hal-02755058v1

Contribution to the annotation of the chicken 20K oligo microarray of ARK-genomics.

Christophe C. Klopp , François Moreews , Michel Aubry , Sandrine Lagarrigue
Plant & Animal Genomes, XVI Conference, 2008, Inconnu, pp.Inconnu
Communication dans un congrès hal-02820463v1

Recherche de manifestations épigénétiques chez la poule

Mireille Morisson , Olivier O. Demeure , Christophe C. Klopp , Yvette Lahbib Mansais , David Gourichon
Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France
Communication dans un congrès hal-02821618v1

Contribution To The Annotations Of The Chicken 20K Oligo Microarray Of ARK-Genomics

Christophe C. Klopp , François Moreews , Marc Aubry , Sandrine Lagarrigue
International Plant & Animal Genomes XVI Conference, Jan 2008, San Diego, United States
Communication dans un congrès inria-00329915v1

The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology research

Sandrine Aegerter , Daniel Baron , C. Carpentier , François Chauvigné , Christelle Dantec
Experimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom
Communication dans un congrès hal-02761230v1

Avancées du transcriptome sur 4 espèces : bovin, porc, poulet, truite

Florence Le Gac , Yann Guiguen , Madeleine Douaire , François Hatey , Gwenola Tosser-Klopp
Colloque Génomique des Animaux d'Elevage, May 2003, Seignosse-le-Pénon, France
Communication dans un congrès hal-02830199v1
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Major contribution to the bovine pangenome: whole genome sequences, SNPs, and structural variants of 154 bulls from 14 breeds

Amandine Suin , Camille Marcuzzo , Camille Eché , Andreea Dréau , Clément Birbes
Plant and Genome San Diego 2024, Jan 2024, San Diego, United States
Poster de conférence hal-04432840v1
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A Bos taurus sequencing methods benchmark for assembly, haplotyping, and variant calling

Camille Eché , Carole Iampietro , Clément Birbes , Andreea Dréau , Claire Kuchly
Plant and Genome San Diego 2024, Jan 2024, San Diego (California), United States. 10, 2024
Poster de conférence hal-04432803v1

A multidisciplinary approach to highlight the mechanisms supporting perceptual interactions in odor mixture

Thierry Thomas-Danguin , Anne-Marie Le Bon , Olivier Taboureau , David D. Jarriault , Frédérique Datiche
13. Wartburg symposium on flavour chemistry and biology, Oct 2023, Eisenach, Germany
Poster de conférence hal-04234447v1

Multidisciplinary approach to explore interactions in odor mixture perception

Thierry Thomas-Danguin , Anne-Marie Le Bon , Olivier Taboureau , Florian Koensgen , David D. Jarriault
45. annual meeting - association for chemoreception sciences (AChemS), Apr 2023, Bonita Springs, Florida, United States.
Poster de conférence hal-04101265v1

A lncRNA gene-enriched atlas for GRCg7b chicken genome using Ensembl, RefSeq and two FAANG databases

Fabien Degalez , Mathieu Charles , Sylvain Foissac , Zhou Haijuan , Guan Dailu
74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.932, 2023, Book of abstracts of the 74st annual meeting of the european federation of animal science
Poster de conférence hal-04217567v1
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.78, 2023, Abstracts
Poster de conférence hal-04217582v1
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Transgenerational epigenetics in quail: whole genome DNA methylation analysis

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
Epigenetic Inheritance: Impact for Biology and Society, Aug 2023, Zurich, Switzerland
Poster de conférence hal-04212971v1
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Preliminary results from Nanopore Q20+ sequencing

Claire Kuchly , Jules Sabban , Eden Darnige , Camille Eché , Amandine Suin
JOBIM 2022 : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2022, RENNES, France. 2022
Poster de conférence hal-03719401v1
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Structural variants detection and de novo genome assembly of a maize line

Carole Iampietro , Camille Eché , Clément Birbes , Arnaud Di Franco , Andreea Dréau
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence hal-03541379v1
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Transgenerational epigenetics in quail

Chloé Cerutti , Sophie Leroux , Paul Terzian , Joanna Lledo , David Gourichon
ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain
Poster de conférence hal-03935584v1

Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae)

Sonja Siljak-Yakovlev , Olivier Bouchez , Céline Lopez-Roques , Sandra Lepers-Andrzejewski , Laurent Bourgois
Plant Genomics and Gene Editing Congress: Europe, Apr 2022, La Hague, Netherlands. 2022
Poster de conférence hal-04343958v1

CONSTRUCTION OF A 16S MINI BARCODE LIBRARY FOR FRENCH WILD BEES

Kamila Canale-Tabet , Emmanuelle Labarthe , Alain Vignal , Nathalie Escaravage , Géraldine Pascal
9th European Congress of Apidology, Sep 2022, belgrade, Serbia
Poster de conférence hal-03855355v1
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De novo assembling 19 maize inbred lines of the European germplasm

Carole Iampietro , Camille Eché , Clement Birbes , Andreea Dreau , Erwan Denis
63rd Annual Maize Genetics Meeting, Mar 2021, virtuel, United States
Poster de conférence hal-03539396v1
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Structural variants detection and de novo genome assembly of a Maize line

Camille Eché , Clement Birbes , Carole Iampietro , Arnaud Di Franco , Andreea Dreau
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541316v1
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De novo assembly of bovine genome using PacBio applications

Camille Eché , Clément Birbes , Carole Iampietro , Andreea Dréau , Claire Kuchly
SMRT Leiden 2021 – Young Investigator Virtual Conference, May 2021, virtuel, Netherlands
Poster de conférence hal-03541224v1
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A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis

Carole Iampietro , Camille Eché , Adrien Castinel , Rémy-Félix Serre , Christophe C. Klopp
PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020
Poster de conférence hal-02947690v1
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Whole metagenome analysis with metagWGS

Joanna Fourquet , Céline Noirot , Christophe C. Klopp , Philippe Pinton , Sylvie Combes
JOBIM2020, Jun 2020, Montpellier, France
Poster de conférence hal-03176836v1
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Whole metagenome analysis with metagWGS

Joanna Fourquet , Adeline Chaubet , Hélène Chiapello , Christine Gaspin , Marisa Haenni
JOBIM 2019, Jul 2019, Nantes, France. , 2019
Poster de conférence hal-02788137v1

Tolérance de la faune ingénieure du sol à la contamination résiduelle par les produits phytosanitaires dans les agroécosystèmes : approches omiques des mécanismes moléculaires en jeu

Audrey Barranger , Emmanuelle Com , Christophe C. Klopp , Françoise Binet
Colloque Ecophysiologie Animale 4 (CEPA4), Oct 2019, Rennes, France
Poster de conférence hal-03028336v1
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Characterization of the sex determining system(s) of the Mexican tetra, Astyanax mexicanus

Boudjema Imarazene , Séverine Beille , Elodie Jouanno , Romain Feron , Celine Lopez-Roques
Paradigm shift in sex chromosome evolution, Sep 2019, Berlin, Germany. , pp.8-9, 2019, Workshop: Paradigm shift in sex chromosome evolution. ⟨10.4126/FRL01-006417884⟩
Poster de conférence hal-02418501v1
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Identification of lncRNAs regulating variable stress-responding sheep naturally exposed to gastrointestinal nematode parasites

Aroa Suárez-Vega , Emma Borkowski , Samantha Dixon , Niel A Karrow , Andrew S Peregrine
37. Conference of the International Society for Animal Genetics (ISAG), Jul 2019, Lleida, Spain. , 2019
Poster de conférence hal-02786567v1

In vivo high-throughput identification of olfactory receptor repertoire coding for a blending mixture

Vanessa Soubeyre , Olivier Taboureau , Karine Audouze , Olivier Bouchez , Christophe C. Klopp
12. Wartburg symposium on flavour chemistry and biology, May 2019, Eisenach, Germany. 2019
Poster de conférence hal-02936619v1

Layers response to suboptimal diet through phenotypic and transcriptomic changes in four tissues

Frédéric Jehl , M. Brenet , Andrea Rau , Colette Désert , Morgane Boutin
PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States. , 2019
Poster de conférence hal-02789419v1

Analysis of whole genome sequence data on a tropical admixed cattle breed, the Creole cattle of Guadeloupe

Gabrièle Adam , Diane Esquerré , Olivier Bouchez , Philippe Bardou , Christophe C. Klopp
International Symposium on environmental and agronomical genomics, Nov 2018, Paris, France. , 2018
Poster de conférence hal-02786834v1
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Single-molecule force spectroscopy to compare the surface properties of food Propionibacteria strains with distinct abilities for EPS production

Fanny Guyomarc'H , Sandrine Parayre , Marie-Noelle Madec , Christophe C. Klopp , Aurélie Nicolas
SPM (scanning probe microscopy on soft and polymer materials), Aug 2018, Leuven, Belgium. 2018
Poster de conférence hal-01862856v1

Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype

Noe Cochetel , Frédéric Escudie , Sarah Jane Cookson , Zhanwu Dai , Philippe Vivin
Plant & Animal Genome Conference XXVI, 2018, San Diego, United States. 2018
Poster de conférence hal-03179038v1
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01608449v1

Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions

Sarah Djebali Quelen , Kylie Munyard , Nathalie Villa-Vialaneix , Cédric Cabau , Andrea Rau
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01603033v1
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Liver and whole blood transcriptome response to chronic heat exposure in laying hens

Frédéric Jehl , Andrea Rau , Colette Désert , Morgane Boutin , Kévin Muret
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, Proceedings of the 36th International Conference on Animal Genetics
Poster de conférence hal-01605567v1

Recherche de régions génomiques responsables du diabète insipide et de la couleur de la coquille celadon chez la Caille japonaise par RADseq

Sophie Leroux , Anna Marissal , Maria Bernard , Diane Esquerre , Johanna Barbieri
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 12, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Poster de conférence hal-01604801v1
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Genome specific expression in the liver of mule and hinny duck hybrids

Christian Diot , Frédéric Herault , Julien Navarro , Laure Le Calvez , Elisabeth Baéza
10. European Symposium on Poultry Genetics (ESPG), Jun 2017, Saint-Malo, France. pp.1, 2017, Proceedings of the 10th European symposium on poultry genetics
Poster de conférence hal-01594559v1
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species

Kévin Muret , Sarah Djebali Quelen , Thomas Derrien , Cédric Cabau , Christophe C. Klopp
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01621915v1
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Phenotype and multi-tissue transcriptome response to diet changes in laying hens

M. Brenet , Andrea Rau , Colette Désert , Morgane Boutin , Kévin Muret
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01621916v1

Une nouvelle facette du génome de poule : les genes “longs non-codants"

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Poster de conférence hal-01605848v1

Functional exploration of naturally and artificially enriched rumen microbiomes reveals novel enzymatic synergies involved in plant cell wall breakdown

Lisa Ufarté , Elisabeth Laville , Davide Cecchini , Davide Rizzo , Etienne Amblard
Functional Metagenomics, Sep 2016, Inderøy, Norway
Poster de conférence hal-02929438v1

The transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability are rootstock-genotype dependent

Noé Cochetel , Frédéric Escudie , Sarah Jane Cookson , Zhanwu Dai , Philippe Vivin
EMBO Conference Nitrogen 2016, Aug 2016, Montpellier, France. 2016
Poster de conférence hal-03178840v1

Evolution des gènes et des génomes dans une démarche de soutien à la diversification d’espèces aquacoles

Julien Bobe , Ingo Braasch , Jérémy Pasquier , Christophe C. Klopp , Hughes Parrinnello
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 2016, Crédits incitatifs financés entre 2011 et 2014
Poster de conférence hal-02740982v1

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

Kévin Muret , Christophe C. Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai
XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016
Poster de conférence hal-02799305v1

La combinaison de cartographie de signatures de sélection, de re-séquençage de génomes et d'analyses d'expression révèle PARK2 et JAG2 comme nouveaux genes candidats régulant l'adiposité

Pierre-François Roux , Simon Boitard , Anne Blum , Brian Parks , Alexandra Montagner
11. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2015, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2015, Journées de la Recherche Avicole et Palmipèdes à Foie Gras
Poster de conférence hal-01194116v1
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Genome discovery of deep frost-tolerant eucalyptus for breeding and molecular ecology

Luc Harvengt , Hélène San Clemente , Jean-Marc Gion , Christophe C. Klopp , Helene Berges
ProCoGen final open conference, Promoting Conifer Genomic Resources, Nov 2015, Orléans, France. 75 p., 2015, ProCoGen final open conference. Promoting Conifer Genomic Resources
Poster de conférence hal-02740714v1

The PHYLOSEX project: Towards a better understanding of sex determination diversity and sex chromosome evolution in fish

Jennifer Anderson , Christophe C. Klopp , Hugues Parrinello , Laurent Journot , John H. Postlethwait
7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. 2015
Poster de conférence hal-02739921v1
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Applications de la génomique chez les races bovines locales tropicales - TROCADERO: TROpical CAttle linkage DEsequilibrium, Resequencing and Optimization

Michel Naves , Olivier O. Bouchez , Christophe C. Klopp , Patrice Dehais
Séminaire SELGEN 2014, Dec 2014, Paris, France. 2014
Poster de conférence hal-02795828v1

RNA-seq analysis of transcriptome response to VHS-V infection in two target tissues of resistant vs susceptible trout clonal lines

Carine Genet , Eloi Verrier , Céline Ciobotaru , Christophe C. Klopp , Diane Esquerre
22. International Plant and Animal Genome (PAG), Jan 2014, San Diego, United States. , 2014
Poster de conférence hal-01189835v1

The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles
Poster de conférence hal-02745585v1
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« sig-learning » Plate-forme d'autoformation à la bio-informatique

Sarah Maman Haddad , Christophe C. Klopp
JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. , 2013
Poster de conférence hal-02810057v1

Selective sweeps using hapFLK combined with genome re-sequencing data reveals strong candidate mutations in QTL regions in divergent chicken lines

Pierre-François Roux , Simon Boitard , Anis Djari , Diane Esquerre , Sylvain Marthey
8th European Symposium on Poultry Genetics (ESPG), Sep 2013, Venise, Italy. 2013, Proceedings of the 8th European Symposium on Poultry Genetics
Poster de conférence hal-01193795v1

Characterization of a conserved master sex-determining gene in salmonids

Yann Guiguen , Ayaka Yano , Barbara Nicol , Elodie Jouanno , René Guyomard
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-01267802v1
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Novel models and strategies to unravel the genetic pathways involved in horn ontogenesis

Aurelien Capitan , Cécile Grohs , Agnès Bonnet , Alain Pinton , Brigitte Leguienne
Plant and Animal Genome, Jan 2012, San Diego, United States. 2012
Poster de conférence hal-01190273v1

Gene annotation with evolutionary support in teleosts with a focus on the salmonid lineage

Julien Bobe , M. Westerfield , Pierre Pontarotti , Christophe C. Klopp , Laurent Journot
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-02746168v1
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Large-scale identification of the causative genetic variants influencing traits of economic interest in French dairy breeds

Didier Boichard , Olivier Bouchez , Aurelien Capitan , Anis Djari , Diane Esquerre
Plant and Animal Genome, Jan 2012, San Diego, United States. 2012
Poster de conférence hal-01190277v1

De novo assembly of Fagus sylvatica transcriptome based on Sanger and 454 ESTs: application in transcriptome-scale analysis of bud phenology and markers development

Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenman , Céline Noirot
IUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012
Poster de conférence hal-02802761v1

Characterization of novel testis specific genes during sex differentiation in rainbow trout [i](Oncorhynchus mykiss)[/i] using a next generation sequencing (NGS) approach

Ayaka Yano , Elodie Dupin-De-Beyssat , Christophe C. Klopp , Yann Guiguen
44. Annual Meeting of the Society for the Study of Reproduction (SSR), Jul 2011, Portland, Oregon, United States. Society for the Study of Reproduction, Biology of Reproduction, 85 (SI), 2011, Biology of Reproduction
Poster de conférence hal-01205070v1

MicroRNAs expression during fish oogenesis and sex differentiation

Amélie A. Juanchich , Christophe C. Klopp , Yann Guiguen , Julien Bobe
9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish
Poster de conférence hal-02746432v1
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The ruminal level of trans-10 fatty acids of dairy cows is linked to the composition of bacterial community

Asma Zened , Sylvie Combes , Laurent L. Cauquil , Jérôme J. Mariette , Chloé Rousseau
4. Congress of European Microbiologists, FEMS, Jun 2011, Genève, Switzerland. 1p, 2011
Poster de conférence hal-02806622v1

Gene expression profiling during gonadal differentiation in rainbow trout (Oncorhynchus mykiss) using a next generation sequencing (NGS) approach

Ayaka Yano , Elodie Jouanno , Christophe C. Klopp , Yann Guiguen
9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish
Poster de conférence hal-02747932v1
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Development of polymorphic markers in quail by next generation sequencing

Mireille Morisson , Florence Vignoles , Katia Feve , Sophie Leroux , David Gourichon
32nd Conference of the International Society of Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics
Poster de conférence hal-01193847v1
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The genome of the simultaneously hermaphroditic snail Lymnaea stagnalis reveals an evolutionary expansion of FMRFamide-like receptors

Joris M Koene , Daniel J. Jackson , Yumi Nakadera , Nicolas Cerveau , Mohammed‐amin Madoui
2024
Pré-publication, Document de travail hal-04465013v1

Massive detection of cryptic recessive genetic defects in cattle mining millions of life histories

Florian Besnard , Ana Guintard , Cécile Grohs , Laurence Guzylack-Piriou , Margarita Cano
2023
Pré-publication, Document de travail hal-04251455v1

Neurodevelopment vs. the immune system: complementary contributions of maternally-inherited gene transcripts and proteins to successful egg development in fish

Daniel Zarski , Aurélie Le Cam , Thomas Frohlich , Miwako Kosters , Christophe C. Klopp
2021
Pré-publication, Document de travail hal-03204116v1
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Genetics of nodulation in Aeschynomene evenia uncovers new mechanisms of the rhizobium-legume symbiosis

Johan Quilbé , Léo Lamy , Laurent Brottier , Philippe Leleux , Joel Fardoux
2020
Pré-publication, Document de travail hal-03030658v1
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RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data

Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno
2020
Pré-publication, Document de travail hal-03048150v1
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A 180 My-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Du Kang
2020
Pré-publication, Document de travail hal-03038088v1
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Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
2019
Pré-publication, Document de travail hal-02790966v1
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Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno
2019
Pré-publication, Document de travail hal-02790844v1
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Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno
2019
Pré-publication, Document de travail hal-02791042v1
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Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
2019
Pré-publication, Document de travail hal-02790965v1
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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau
2018
Pré-publication, Document de travail hal-02791029v1
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Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
2017
Pré-publication, Document de travail hal-02791027v1

Analyse phylogénomique des duplications géniques chez les poissons téléostéens : une approche PAR RNASeq

Julien Bobe , Yann Guiguen , John H. Postlethwait , Laurent Journot , Christophe C. Klopp
[Rapport de recherche] ANR-10-GENM-017, University of Oregon; Centre National de la Recherche Scientifique (CNRS); Aix Marseille Université (AMU); INRA SCRIBE Station Commune de Recherche en Ichtyophysiologie. Biodiversité et Environnement. 2015
Rapport hal-02801550v1
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Genome-wide characterization of RNA editing in chicken: lack of evidence for non-A-to-I events

Laure Fresard , Sophie Leroux , Pierre-François Roux , Christophe C. Klopp , Stéphane Fabre
[University works] auto-saisine. 2014
Rapport hal-01210706v1