Christophe KLOPP

Documents

Affiliations actuelles

577435

Publications

49191

	Genome structures resolve the early diversification of teleost fishes Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩ Article dans une revue hal-03765882v1
	Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity Emilie Dordet-Frisoni , Céline Vandecasteele , Rachel Contarin , Eveline Sagné , Eric Baranowski Microbial Genomics, 2022, 8 (5), pp.000829. ⟨10.1099/mgen.0.000829⟩ Article dans une revue hal-03716470v2
	An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩ Article dans une revue hal-03652234v1
	Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩ Article dans une revue hal-03737450v1
	A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly Quentin Piet , Gaetan Droc , William Marande , Gautier Sarah , Stéphanie Bocs Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩ Article dans une revue hal-03678239v1
	RNA-Seq Data for Reliable SNP Detection and Genotype Calling Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩ Article dans une revue hal-03276149v1
	RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno Molecular Ecology Resources, 2021, 21 (5), pp.1715-1731. ⟨10.1111/1755-0998.13360⟩ Article dans une revue hal-03150035v1
	The rise and fall of the ancient northern pike master sex-determining gene Qiaowei Pan , Romain Feron , Elodie Jouanno , Hugo Darras , Amaury Herpin eLife, 2021, 10, pp.e62858. ⟨10.7554/eLife.62858⟩ Article dans une revue hal-03139073v2
	A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron Current Biology - CB, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩ Article dans une revue hal-03337251v1
	Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains Marisol Goñi , Christophe C. Klopp , Magali Ranchou-Peyruse , Anthony Ranchou-Peyruse , Mathilde Monperrus Research in Microbiology, 2020, 171 (1), pp.3-12. ⟨10.1016/j.resmic.2019.10.003⟩ Article dans une revue hal-02390352v1
	Independent origin of XY and ZW sex determination mechanisms in Mosquitofish sister species Verena A. Kottler , Romain Feron , Indrajit Nanda , Christophe C. Klopp , Kang Du Genetics, 2020, 214 (1), pp.193-209. ⟨10.1534/genetics.119.302698⟩ Article dans une revue hal-02624941v1
	The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization Kang Du , Matthias Stöck , Susanne Kneitz , Christophe C. Klopp , Joost Woltering Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩ Article dans une revue hal-02640938v1
	Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩ Article dans une revue hal-02623895v1
	Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758) Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩ Article dans une revue hal-02937875v1
	Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩ Article dans une revue hal-02624885v1
	Draft genome assembly and annotation of the gila topminnow Poeciliopsis occidentalis Mariana Mateos , Du Kang , Christophe C. Klopp , Hugues Parrinello , Mateo Garcia-Olazabal Frontiers in Ecology and Evolution, 2019, 7, pp.1-7. ⟨10.3389/fevo.2019.00404⟩ Article dans une revue hal-02620825v1
	Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno PLoS Genetics, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩ Article dans une revue inserm-02279967v1
	The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae) Valentine Barassé , Axel Touchard , Nathan Téné , Maurice Tindo , Martin Kenne Toxins, 2019, 11 (12), pp.732. ⟨10.3390/toxins11120732⟩ Article dans une revue hal-03115116v1
	Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩ Article dans une revue hal-01506620v1
	Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle Hans D Daetwyler , Aurelien Capitan , Hubert Pausch , Paul Stothard , Rianne van Binsbergen Nature Genetics, 2014, 46 (8), pp.858-865. ⟨10.1038/ng.3034⟩ Article dans une revue hal-01193853v1
	An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss Ayaka Yano , René R. Guyomard , Barbara B. Nicol , Elodie Jouanno , Edwige Quillet Current Biology - CB, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩ Article dans une revue hal-01000319v1
	NG6: Integrated next generation sequencing storage and processing environment. Jérôme J. Mariette , Frédéric Escudié , Nicolas Allias , Gérald Salin , Céline Noirot BMC Genomics, 2012, 13 (1), pp.462. ⟨10.1186/1471-2164-13-462⟩ Article dans une revue inserm-00733481v1

	RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno 2020 Pré-publication, Document de travail hal-03048150v1
	Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques 2019 Pré-publication, Document de travail hal-02790966v1
	Sex chromosome and sex locus characterization in the goldfish, Carassius auratus Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno 2019 Pré-publication, Document de travail hal-02790844v1
	Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno 2019 Pré-publication, Document de travail hal-02791042v1
	Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques 2019 Pré-publication, Document de travail hal-02790965v1

Christophe KLOPP

Publications

Genome structures resolve the early diversification of teleost fishes

Impacts of Mycoplasma agalactiae restriction-modification systems on pan-epigenome dynamics and genome plasticity

An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

RNA-Seq Data for Reliable SNP Detection and Genotype Calling

RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data

The rise and fall of the ancient northern pike master sex-determining gene

A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains

Independent origin of XY and ZW sex determination mechanisms in Mosquitofish sister species

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity

Draft genome assembly and annotation of the gila topminnow Poeciliopsis occidentalis

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae)

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss

NG6: Integrated next generation sequencing storage and processing environment.

RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity