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ProteHome: A national web portal for the proteomics community

S. Bournais , Ludovic Legrand , Myriam Ferro , D. Bouyssié , Emmanuelle Com , et al.
Spétrométrie de Masse et Analyse Protéomique-SMAP, Sep 2009, Dijon, France. 1 p., 2009
Poster de conférence hal-02824757v1

Advances and Utility of the Human Plasma Proteome

Eric Deutsch , Gilbert Omenn , Zhi Sun , Michal Maes , Maria Pernemalm , et al.
Journal of Proteome Research, 2021, 20 (12), pp.5241-5263. ⟨10.1021/acs.jproteome.1c00657⟩
Article dans une revue hal-04142088v1

Exploring the plant response to cadmium exposure by transcriptomic, proteomic and metabolomic approaches: Potentiality of high-throughput methods, promises of integrative biology

Florent Villiers , Véronique Hugouvieux , Nathalie Leonhardt , Alain Vavasseur , Christophe Junot , et al.
D. K. Gupta and L. M. Sandalio. Metal Toxicity in Plants: Perception, Signaling and Remediation, Springer-Verlag Berlin Heidelberg, Germany, pp.119-142, 2012
Chapitre d'ouvrage hal-00675146v1

Mass Spectrometry-Based Proteomics Reveal Alcohol Dehydrogenase 1B as a Blood Biomarker Candidate to Monitor Acetaminophen-Induced Liver Injury

Floriane Pailleux , Pauline Maes , Michel Jaquinod , Justine Barthelon , Marion Darnaud , et al.
International Journal of Molecular Sciences, 2021, 22 (20), pp.11071. ⟨10.3390/ijms222011071⟩
Article dans une revue hal-04142115v1
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A high-stringency blueprint of the human proteome

S Adhikari , Edouard C Nice , E Deutsch , Lydie Lane , Gilbert S Omenn , et al.
Nature Communications, 2020, 11 (1), pp.5301. ⟨10.1038/s41467-020-19045-9⟩
Article dans une revue hal-03004830v1

Investigating the macropinocytic proteome of Dictyostelium amoebae by high-resolution mass spectrometry

Agnès Journet , Gérard Klein , Sabine Brugiere , Yves Vandenbrouck , Agnès Chapel , et al.
Proteomics, 2012
Article dans une revue hal-02087632v1

Tame the expression of the genes with DSIR. Biofutur.

Denis Biard , Odile Filhol-Cochet , Yves Vandenbrouck
Biofutur, 2014
Article dans une revue hal-02086511v1
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Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes

Laetitia Guillot , Ludovic Delage , Alain Viari , Yves Vandenbrouck , Emmanuelle Com , et al.
BMC Genomics, 2019, 20 (1), pp.56. ⟨10.1186/s12864-019-5431-9⟩
Article dans une revue hal-01987197v1

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1

Eric W Deutsch , Christopher M. Overall , Jennifer van Eyk , Mark D. Baker , Young-Ki Paik , et al.
Journal of Proteome Research, 2016, 15 (11), pp.3961-3970. ⟨10.1021/acs.jproteome.6b00392⟩
Article dans une revue hal-02191414v1
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IFB/ELIXIR-FR, the french node of ELIXIR

Anne-Françoise Adam-Blondon , Jacques van Helden , Gildas Le Corguillé , Christophe Blanchet , Hélène Chiapello , et al.
ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France
Communication dans un congrès hal-04503051v1

An accurate and interpretable model for siRNA efficacy prediction.

Jean-Philippe Vert , Nicolas Foveau , Christian Lajaunie , Yves Vandenbrouck
BMC Bioinformatics, 2006, 7, pp.520. ⟨10.1186/1471-2105-7-520⟩
Article dans une revue hal-00433579v1

Designing an in silico strategy to select tissue-leakage biomarkers using the galaxy framework

Lien Nguyen , Virginie Brun , Florence Combes , Valentin Loux , Yves Vandenbrouck
Proteomics for biomarker discovery: Methods and protocols, 1959, pp.275-289, 2019, Methods in Molecular Biology book series (MIMB), ISBN: 978-1-4939-9164-8. ⟨10.1007/978-1-4939-9164-8_18⟩
Chapitre d'ouvrage hal-02284981v1
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Protocadherin 12 deficiency alters morphogenesis and transcriptional profile of the placenta.

Christine Rampon , Stéphanie Bouillot , Adriana Climescu-Haulica , Marie-Hélène Prandini , Francine Cand , et al.
Physiological Genomics, 2008, 34 (2), pp.193-204. ⟨10.1152/physiolgenomics.00220.2007⟩
Article dans une revue inserm-00397616v1

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14

Christine Carapito , Lydie Lane , Mohamed Benama , Alisson Opsomer , Emmanuelle Mouton-Barbosa , et al.
Journal of Proteome Research, 2015, 14 (9), pp.3621-3634. ⟨10.1021/pr5010345⟩
Article dans une revue hal-02191518v1

Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

Frédéric Boyer , Gwennaële Fichant , Jérémie Berthod , Yves Vandenbrouck , Ina Attree
BMC Genomics, 2009, 10, pp.104. ⟨10.1186/1471-2164-10-104⟩
Article dans une revue hal-00377407v1
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The functionally unannotated proteome of human male tissues: A shared resource to uncover new protein functions associated with reproductive biology

Yves Vandenbrouck , Charles Pineau , Lydie Lane
Journal of Proteome Research, 2020, 19 (12), pp.4782-4794. ⟨10.1021/acs.jproteome.0c00516⟩
Article dans une revue hal-03003302v1

Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots.

Fany Doustaly , Florence Combes , Julie B Fiévet , Serge Berthet , Véronique Hugouvieux , et al.
Metallomics, 2014, 6 (4), pp.809-21. ⟨10.1039/c4mt00005f⟩
Article dans une revue hal-00982631v1
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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Eric W Deutsch , Lydie Lane , Christopher M Overall , Nuno Bandeira , Mark D. Baker , et al.
Journal of Proteome Research, 2019, 18 (12), pp.4108-4116. ⟨10.1021/acs.jproteome.9b00542⟩
Article dans une revue hal-02364721v1
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Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods

Christine Carapito , Paula Duek , Charlotte Macron , Marine Seffals , Karine Rondel , et al.
Journal of Proteome Research, 2017, 16 (12), pp.4340-4351. ⟨10.1021/acs.jproteome.7b00374⟩
Article dans une revue hal-01681656v1

The Genexpress IMAGE Knowledge base of human brain transcriptome : a prototype of integrated resource for functional and computational genomics

Geneviève Pietu , Régine Mariage-Samson , Nicole Fayein , Christiane Matingou , Eric Eveno , et al.
Genome Research, 1999, 9 (2), pp.195-209
Article dans une revue hal-00098890v1
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Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update

Yves Vandenbrouck , Lydie Lane , Christine Carapito , Paula Duek , Karine Rondel , et al.
Journal of Proteome Research, 2016, 15 (11), pp.3998-4019. ⟨10.1021/acs.jproteome.6b00400⟩
Article dans une revue hal-02191502v1

Guidelines for reporting the use of mass spectrometry informatics in proteomics

Pierre-Alain Binz , Robert Barkovich , Ronald Beavis , David Creasy , David Horn , et al.
Nature Biotechnology, 2008, 26 (8), pp.862-862. ⟨10.1038/nbt0808-862⟩
Article dans une revue hal-04504670v1