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Putting into Practice Domain-Linear Motif Interaction Predictions for Exploration of Protein Networks

Katja Luck , Sadek Fournane , Bruno Kieffer , Murielle Masson , Yves Nominé , et al.
PLoS ONE, 2011, 6 (11), pp.e25376. ⟨10.1371/journal.pone.0025376⟩
Article dans une revue hal-03406383v1

Protein mutagenesis with monodispersity-based quality probing: selective inactivation of p53 degradation and DNA-binding properties of HPV E6 oncoprotein

Tutik Ristriani , Yves Nominé , Cécile Laurent , Étienne Weiss , Gilles Travé
Protein Expression and Purification, 2002, 26 (3), pp.357-367. ⟨10.1016/s1046-5928(02)00570-3⟩
Article dans une revue istex hal-03406435v1

A strategy for optimizing the monodispersity of fusion proteins: application to purification of recombinant HPV E6 oncoprotein

Yves Nominé , Tutik Ristriani , Cécile Laurent , Jean-François Lefèvre , Étienne Weiss , et al.
Protein Engineering, Design and Selection, 2001, 14 (4), pp.297-305. ⟨10.1093/protein/14.4.297⟩
Article dans une revue hal-03406440v1

One-step affinity purification of fusion proteins with optimal monodispersity and biological activity: application to aggregation-prone HPV E6 proteins

Anna Bonhoure , Auguste Demenge , Camille Kostmann , Leticia San José , Eva de La Cal , et al.
Microbial Cell Factories, 2018, 17 (1), ⟨10.1186/s12934-018-1039-z⟩
Article dans une revue hal-02397339v1
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Dual Specificity PDZ- and 14-3-3-Binding Motifs: A Structural and Interactomics Study

Gergo Gogl , Pau Jane , Célia Caillet-Saguy , Camille Kostmann , Goran Bich , et al.
Structure, 2020, 28 (7), pp.747. ⟨10.1016/j.str.2020.03.010⟩
Article dans une revue hal-02545805v1
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Self-Associating Peptides for Modular Bifunctional Conjugation of Tetramer Macromolecules in Living Cells

Marc Vigneron , Frank Dietsch , Laurent Bianchetti , Annick Dejaegere , Yves Nominé , et al.
Bioconjugate Chemistry, 2019, 30 (6), pp.1734-1744. ⟨10.1021/acs.bioconjchem.9b00276⟩
Article dans une revue hal-03663166v1

Proteasomal Degradation of p53 by Human Papillomavirus E6 Oncoprotein Relies on the Structural Integrity of p53 Core Domain

Xavier Bernard , Philip Robinson , Yves Nominé , Murielle Masson , Sebastian Charbonnier , et al.
PLoS ONE, 2011, 6 (10), pp.e25981. ⟨10.1371/journal.pone.0025981⟩
Article dans une revue hal-03406384v1

Strategies for bacterial expression of protein–peptide complexes: Application to solubilization of papillomavirus E6

Abdellahi Ould M’hamed Ould Sidi , Khaled Ould Babah , Nicole Brimer , Yves Nominé , Christophe Romier , et al.
Protein Expression and Purification, 2011, 80 (1), pp.8-16. ⟨10.1016/j.pep.2011.06.013⟩
Article dans une revue hal-03406388v1

Kinetic analysis of the interactions of human papillomavirus E6 oncoproteins with the ubiquitin ligase E6AP using surface plasmon resonance.

Katia Zanier , Sebastian Charbonnier , Mireille Baltzinger , Yves Nominé , Danièle Altschuh , et al.
Journal of Molecular Biology, 2005, 349 (2), pp.401-12. ⟨10.1016/j.jmb.2005.03.071⟩
Article dans une revue istex hal-00264832v1
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Identification of MOSPD2, a novel scaffold for endoplasmic reticulum membrane contact sites

Thomas Di Mattia , Léa P. Wilhelm , Souade Ikhlef , Corinne Wendling , Danièle Spehner , et al.
EMBO Reports, 2018, 19 (7), ⟨10.15252/embr.201745453⟩
Article dans une revue hal-02177612v1

The Structural and Dynamic Response of MAGI-1 PDZ1 with Noncanonical Domain Boundaries to the Binding of Human Papillomavirus E6

Sebastian Charbonnier , Yves Nominé , Juan Ramírez , Katja Luck , Anne Chapelle , et al.
Journal of Molecular Biology, 2011, 406 (5), pp.745-763. ⟨10.1016/j.jmb.2011.01.015⟩
Article dans une revue hal-03406393v1
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Rewiring of RSK-PDZ Interactome by Linear Motif Phosphorylation.

Gergő Gógl , Beáta Biri-Kovács , Fabien Durbesson , Pau Jane , Yves Nominé , et al.
Journal of Molecular Biology, 2018, 17 (1), pp.1234-1249. ⟨10.1016/j.jmb.2019.01.038⟩
Article dans une revue hal-02397343v1
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Formation of well-defined soluble aggregates upon fusion to MBP is a generic property of E6 proteins from various human papillomavirus species.

Katia Zanier , Yves Nominé , Sebastian Charbonnier , Christine Ruhlmann , Patrick Schultz , et al.
Protein Expression and Purification, 2007, 51 (1), pp.59-70. ⟨10.1016/j.pep.2006.07.029⟩
Article dans une revue istex hal-03063876v1
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ProFeatMap: a highly customizable tool for 2D feature representation of protein sets

Goran Bich , Elodie Monsellier , Gilles Travé , Yves Nominé
Bioinformatics Advances, 2023, 3 (1), ⟨10.1093/bioadv/vbad022⟩
Article dans une revue hal-04219167v1
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Interactomic affinity profiling by holdup assay: Acetylation and distal residues impact the PDZome-binding specificity of PTEN phosphatase

Pau Jané , Gergő Gógl , Camille Kostmann , Goran Bich , Virginie Girault , et al.
PLoS ONE, 2020, 15 (12), pp.e0244613. ⟨10.1371/journal.pone.0244613⟩
Article dans une revue hal-03099990v1

Mapping the interactome of HPV E6 and E7 oncoproteins with the ubiquitin-proteasome system

Juline Poirson , Elise Biquand , Marie-Laure Straub , Patricia Cassonnet , Yves Nominé , et al.
FEBS Journal, 2017, 284 (19), pp.3171-3201. ⟨10.1111/febs.14193⟩
Article dans une revue pasteur-01971482v1
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Small p53 derived peptide suitable for robust nanobodies dimerization

Frank Dietsch , Yves Nominé , Audrey Stoessel , Camille Kostmann , Anna Bonhoure , et al.
Journal of Immunological Methods, 2021, 498, pp.113144. ⟨10.1016/j.jim.2021.113144⟩
Article dans une revue hal-03370331v1
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Benchtop holdup assay for quantitative affinity-based analysis of sequence determinants of protein-motif interactions

Anna Bonhoure , Anne Forster , Khaled Ould Babah , Gergő Gógl , Pascal Eberling , et al.
Analytical Biochemistry, 2020, 603, pp.113772. ⟨10.1016/j.ab.2020.113772⟩
Article dans une revue hal-03406346v1

Mapping the interactome of HPV E6 and E7 oncoproteins with the ubiquitin-proteasome system

Juline Poirson , Elise Biquand , Marie-Laure Straub , Patricia Cassonnet , Yves Nominé , et al.
The FEBS Journal, 2017, 284 (19), pp.3171-3201. ⟨10.1111/febs.14193⟩
Article dans une revue hal-03406348v1

A Computational Protocol to Analyze PDZ/PBM Affinity Data Obtained by High-Throughput Holdup Assay

Pau Jané , Lionel Chiron , Goran Bich , Gilles Travé , Yves Nominé
PDZ Mediated Interactions, 2256, Springer US, pp.61-74, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1166-1_4⟩
Chapitre d'ouvrage hal-03406173v1

ProFeatMap: a highly customizable tool for 2D feature representation of protein sets

Goran Bich , Elodie Monsellier , Gilles Travé , Yves Nominé
Bioinformatics Advances, 2023, 3 (1), ⟨10.1093/bioadv/vbad022⟩
Article dans une revue hal-04304661v1

Domain Substructure of HPV E6 Oncoprotein: Biophysical Characterization of the E6 C-Terminal DNA-Binding Domain

Yves Nominé , Sebastian Charbonnier , Tutik Ristriani , Gunter Stier , Murielle Masson , et al.
Biochemistry, 2003, 42 (17), pp.4909-4917. ⟨10.1021/bi026980c⟩
Article dans une revue istex hal-03406433v1

Peptide-Protein Binding Investigated by Far-IR Spectroscopy and Molecular Dynamics Simulations

Yoann Cote , Yves Nominé , Juan Ramon Ramirez Ramos , Petra Hellwig , Roland Stote
Biophysical Journal, 2017, 112 (12), pp.2575-2588. ⟨10.1016/j.bpj.2017.05.018⟩
Article dans une revue hal-03338652v1

Structural and Functional Analysis of E6 Oncoprotein: Insights in the Molecular Pathways of Human Papillomavirus-Mediated Pathogenesis

Yves Nominé , Murielle Masson , Sebastian Charbonnier , Katia Zanier , Tutik Ristriani , et al.
Molecular Cell, 2006, 21 (5), pp.665-678. ⟨10.1016/j.molcel.2006.01.024⟩
Article dans une revue hal-03406417v1

Specific recognition of four-way DNA junctions by the C-terminal zinc-binding domain of HPV oncoprotein E6

Tutik Ristriani , Yves Nominé , Murielle Masson , Étienne Weiss , Gilles Travé
Journal of Molecular Biology, 2001, 305 (4), pp.729-739. ⟨10.1006/jmbi.2000.4330⟩
Article dans une revue istex hal-03406441v1

HPV oncoprotein E6 is a structure-dependent DNA-binding protein that recognizes four-way Junctions † †This work is dedicated to the memory of Jean-François Lefèvre. 2 2Edited by M. Yaniv

Tutik Ristriani , Murielle Masson , Yves Nominé , Cécile Laurent , Jean-François Lefèvre , et al.
Journal of Molecular Biology, 2000, 296 (5), pp.1189-1203. ⟨10.1006/jmbi.2000.3527⟩
Article dans une revue istex hal-03406442v1

1H and 15N resonance assignment, secondary structure and dynamic behaviour of the C-terminal domain of human papillomavirus oncoprotein E6.

Yves Nominé , Sebastian Charbonnier , Laurent Miguet , Noelle Potier , Alain van Dorsselaer , et al.
Journal of Biomolecular NMR, 2005, 31 (2), pp.129-41. ⟨10.1007/s10858-004-7802-y⟩
Article dans une revue istex hal-00187709v1
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Strategies for bacterial expression of protein–peptide complexes: Application to solubilization of papillomavirus E6

Abdellahi Ould M’hamed Ould Sidi , Khaled Ould Babah , Nicole Brimer , Yves Nominé , Christophe Romier , et al.
Protein Expression and Purification, 2011, 80 (1), pp.8-16. ⟨10.1016/j.pep.2011.06.013⟩
Article dans une revue hal-03049172v1

High-Quality Data of Protein/Peptide Interaction by Isothermal Titration Calorimetry

Juan Ramirez , Yves Nominé
Methods in Molecular Biology, 2019, 1964, pp.99-117. ⟨10.1007/978-1-4939-9179-2_8⟩
Article dans une revue hal-03677846v1

Spot peptide arrays and SPR measurements: throughput and quantification in antibody selectivity studies.

Thierry Vernet , Laurence Choulier , Yves Nominé , Laure Bellard , Mireille Baltzinger , et al.
Journal of Molecular Recognition, 2015, 28 (10), pp.635-44
Article dans une revue hal-01199269v1