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Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts

Remy Nicolle , Yuna Blum , Laëtitia Marisa , Céline Loncle , Odile Gayet , et al.
Cell Reports, 2017, 21 (9), pp.2458-2470. ⟨10.1016/j.celrep.2017.11.003⟩
Article dans une revue inserm-01985259v1

Redefining phenotypic heterogeneity of pancreatic ductal adenocarcinoma: A bottom-up approach

Marc Hilmi , Flore Delecourt , Jerôme Rafenne , Taib Bourega , Nelson Dusetti , et al.
AACR Special Conference in Cancer Research: Pancreatic Cancer; 2023 Sep 27-30; Boston, Massachusetts., Sep 2023, Boston, United States. pp.B064-B064, ⟨10.1158/1538-7445.panca2023-b064⟩
Communication dans un congrès hal-04456752v1
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A factor model to analyse heterogeneity in gene expression in a context of QTL characterization

Yuna Blum , Sandrine Lagarrigue , David Causeur
XXXII International Conference on Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. 2010, Proceedings of the 32nd International Conference on Animal Genetics
Poster de conférence hal-02754275v1
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Crest maturation at the cardiomyocyte surface contributes to a new late postnatal development stage that controls the diastolic function of the adult heart

Clément Karsenty , Céline Guilbeau-Frugier , Gaël Genet , Marie-Hélène Seguelas , Philippe Alzieu , et al.
2022
Pré-publication, Document de travail hal-03574569v1
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Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals

Alexandra Montagner , Agata Korecka , Arnaud Polizzi , Yannick Lippi , Yuna Blum , et al.
Scientific Reports, 2016, 6 (1), pp.1-14. ⟨10.1038/srep20127⟩
Article dans une revue hal-01482816v1
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Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks

Rose-Marie Fraboulet , Yanis Si Ahmed , Marc Aubry , Sébastien Corre , Marie-Dominique Galibert , et al.
JOURNÉES OUVERTES EN BIOLOGIE, INFORMATIQUE ET MATHÉMATIQUES (JOBIM ) 2023, Jun 2023, Diverses villes françaises, France
Communication dans un congrès hal-04286509v1
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Analyse génétique d'un caractère complexe à l'aide de données transcriptomiques

Yuna Blum
Autre. AGROCAMPUS OUEST, 2012. Français. ⟨NNT : ⟩
Thèse tel-02806749v1
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Identification of candidate polymorphism in a QTL region by combining eQTL mapping with NGS data

Pierre-François Roux , Yuna Blum , Colette Désert , Anis Djari , Diane Esquerre , et al.
64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.300
Communication dans un congrès hal-01019609v1

Sparse factor models for gene co-expression networks.

Yuna Blum , M. Houée , David Causeur
Séminaire de Biostatistiques, Dec 2012, Toulouse (FR), France. non paginé
Communication dans un congrès hal-00841019v1
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Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of pleural mesotheliomas to CDK4/6 inhibition

Sabine Paternot , Eric Raspé , C Meiller , Maxime Tarabichi , Jean-Baptiste Assié , et al.
Molecular Oncology, In press, ⟨10.1002/1878-0261.13351⟩
Article dans une revue hal-03898858v1

Deciphering the Genetic Etiology of Pediatric Cancers Through an Integrative Gene Network Approach

C. Savary , A. Kim , A. Lespagnol , V. Gandemer , I. Pellier , et al.
Pediatric Blood and Cancer, 2019, 66, pp.S509-S509
Article dans une revue hal-02355731v1
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DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

Clémentine Decamps , Alexis Arnaud , Florent Petitprez , Mira Ayadi , Aurélia Baurès , et al.
BMC Bioinformatics, 2021, 22 (1), pp.473. ⟨10.1186/s12859-021-04381-4⟩
Article dans une revue hal-03372668v1
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Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans

Veronica Codoni , Yuna Blum , Mete Civelek , Carole Proust , Oscar Franzén , et al.
G3, 2016, 6 (10), pp.3361-3371. ⟨10.1534/g3.116.033894⟩
Article dans une revue hal-01404133v1
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Dissecting heterogeneity in malignant pleural mesothelioma through histo-molecular gradients for clinical applications

Yuna Blum , Clément Meiller , Lisa Quetel , Nabila Elarouci , Mira Ayadi , et al.
Nature Communications, 2019, 10, pp.1333. ⟨10.1038/s41467-019-09307-6⟩
Article dans une revue hal-02090279v1
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Bariatric Surgery Induces Disruption in Inflammatory Signaling Pathways Mediated by Immune Cells in Adipose Tissue: A RNA-Seq Study

Christine Poitou , Claire Perret , François Mathieu , Vinh Truong , Yuna Blum , et al.
PLoS ONE, 2015, 10 (5), pp.e0125718. ⟨10.1371/journal.pone.0125718⟩
Article dans une revue hal-01227880v1
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Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken

Yuna Blum , Guillaume Le Mignon , David Causeur , Olivier Filangi , Colette Désert , et al.
BMC Genomics, 2011, 12 (november), pp.8. ⟨10.1186/1471-2164-12-567⟩
Article dans une revue hal-00730144v1
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Role of lipid phosphate phosphatase 3 in human aortic endothelial cell function

Zahia Touat-Hamici , Henri Weidmann , Yuna Blum , Carole Proust , Hervé Durand , et al.
Cardiovascular Research, 2016, 112 (3), pp.702 - 713. ⟨10.1093/cvr/cvw217⟩
Article dans une revue hal-01484581v1
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Cirscan: a shiny application to identify differentially active sponge mechanisms and visualize circRNA-miRNA-mRNA networks

Rose-Marie Fraboulet , Yanis Si Ahmed , Marc Aubry , Sébastien Corre , Marie-Dominique Galibert , et al.
BMC Bioinformatics, 2024, 25, pp.53. ⟨10.1186/s12859-024-05668-y⟩
Article dans une revue hal-04540383v1
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Inferring gene networks using a sparse factor model approach, Statistical Learning and Data Science

Yuna Blum , Magali Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur
Learning and Data Science, May 2012, Florence (IT), Italy
Communication dans un congrès hal-00841017v1

Genetic analysis of a complex trait using transcriptomic data: contribution of gene regulatory network modeling

Yuna Blum , Magalie Houée , Chloé Friguet , Sandrine Lagarrigue , David Causeur
XX. Conference of the plant & animal genome (PAG), Jan 2012, San Diego, United States. 1 p
Communication dans un congrès hal-00841103v1
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AnnotQTL: a new tool to gather functional and comparative information on a genomic region

Frédéric Lecerf , Anthony Bretaudeau , Olivier Sallou , Colette Désert , Yuna Blum , et al.
12. Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2011, JOBIM 2011
Poster de conférence hal-02746728v1
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Ephrin-B1 regulates the adult diastolic function through a late postnatal maturation of cardiomyocyte surface crests

Clement Karsenty , Celine Guilbeau-Frugier , Gaël Genet , Marie-Helene Seguelas , Philippe Alzieu , et al.
eLife, 2023, 12, pp.e80904. ⟨10.7554/eLife.80904⟩
Article dans une revue hal-03944430v1
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Multi-site tumor sampling highlights molecular intra-tumor heterogeneity in malignant pleural mesothelioma

Clément Meiller , François Montagne , Theo Hirsch , Stefano Caruso , Julien de Wolf , et al.
Genome Medicine, 2021, 13 (1), pp.113. ⟨10.1186/s13073-021-00931-w⟩
Article dans une revue inserm-03289952v1

Pleiotropic effects of polymorphism of the gene diacylglycerol-O-transferase 1 (DGAT1) in the mammary gland tissue of dairy cows

Núria Mach , Yuna Blum , A. Bannink , David Causeur , M. Houee-Bigot , et al.
Journal of Dairy Science, 2012, 95 (9), pp.4989-5000. ⟨10.3168/jds.2012-5348⟩
Article dans une revue hal-00841015v1
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Transcriptome profiling reveals interaction between two QTL for fatness in chicken

Yuna Blum , Guillaume Le Mignon , Frederique Pitel , David Causeur , Olivier Demeure , et al.
15th European workshop on QTL mapping and marker assisted selection (QTLMAS), May 2011, Rennes (FR), France. 1 p
Communication dans un congrès hal-00841016v1
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Priming therapy by targeting enhancer-initiated pathways in patient-derived pancreatic cancer cells

Nicolas A Fraunhoffer , Aura I Moreno Vega , Analía Meilerman Abuelafia , Marie Morvan , Emilie Lebarbier , et al.
EBioMedicine, 2023, 92, pp.104602. ⟨10.1016/j.ebiom.2023.104602⟩
Article dans une revue hal-04100206v1

PACpAInt: a deep learning approach to identify molecular subtypes of pancreatic adenocarcinoma on histology slides

C. Saillard , F. Delecourt , B. Schmauch , O. Moindrot , M. Svrcek , et al.
2022
Pré-publication, Document de travail hal-03871989v1

Genetic alterations of malignant pleural mesothelioma: association to tumor heterogeneity and overall survival Author names

Lisa Quetel , Clément Meiller , Jean-Baptiste Assié , Yuna Blum , Sandrine Imbeaud , et al.
Molecular Oncology, 2020, Epub ahead of print. ⟨10.1002/1878‐0261.12651⟩
Article dans une revue inserm-04075106v1

Inférence de réseaux de co-expression génique

Yuna Blum , M. Houée , David Causeur
10ème Journée Biogenouest, Nov 2012, Rennes (FR), France. non paginé
Communication dans un congrès hal-00841018v1

Stratification of Pancreatic Ductal Adenocarcinomas Based on Tumor and Microenvironment Features

Francesco Puleo , Remy Nicolle , Yuna Blum , Jerome Cros , Laetitia Marisa , et al.
Gastroenterology, 2018, 155 (6), pp.1999+. ⟨10.1053/j.gastro.2018.08.033⟩
Article dans une revue hal-02143548v1