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Set-Min sketch: a probabilistic map for power-law distributions with application to k-mer annotation

Yoshihiro Shibuya , Gregory Kucherov
Research in Computational Molecular Biology - 25th Annual International Conference, RECOMB 2021, Padua, Italy, August 29-September 1, 2021, Proceedings, Aug 2021, Padova, Italy. ⟨10.1101/2020.11.14.382713⟩
Communication dans un congrès hal-03049389v1
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Better quality score compression through sequence-based quality smoothing

Yoshihiro Shibuya , Matteo Comin
BMC Bioinformatics, 2019, 20 (S9), pp.302. ⟨10.1186/s12859-019-2883-5⟩
Article dans une revue hal-04488242v1
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Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k -Mer Annotation

Yoshihiro Shibuya , Djamal Belazzougui , Gregory Kucherov
Journal of Computational Biology, 2022, 29 (2), pp.140-154. ⟨10.1089/cmb.2021.0429⟩
Article dans une revue hal-03867516v1

Indexing k -mers in linear space for quality value compression

Yoshihiro Shibuya , Matteo Comin
Journal of Bioinformatics and Computational Biology, 2019, 17 (05), pp.1940011. ⟨10.1142/S0219720019400110⟩
Article dans une revue hal-04488234v1
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Antoine Limasset , Yoshihiro Shibuya , Giulio Ermanno Pibiri
Logiciel hal-04448111v1
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Set-Min sketch: a probabilistic map for power-law distributions with application to k-mer annotation

Yoshihiro Shibuya , Djamal Belazzougui , Gregory Kucherov
Journal of Computational Biology, 2022, 29 (2), pp.140-154. ⟨10.1089/cmb.2021.0429⟩
Article dans une revue hal-04431772v1
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Indexing k-mers in Linear-space for Quality Value Compression

Yoshihiro Shibuya , Matteo Comin
BIOSTEC 2019 : 12th International Joint Conference on Biomedical Engineering Systems and Technologies, Feb 2019, Prague, Czech Republic. pp.21-29, ⟨10.5220/0007369100210029⟩
Communication dans un congrès hal-04488226v1