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Yann Ponty

14

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11034

	SPARCS: a web server to analyze (un)structured regions in coding RNA sequences. Yang Zhang , Yann Ponty , Mathieu Blanchette , Eric Lecuyer , Jérôme Waldispühl Nucleic Acids Research, 2013, Web Server Issue, 41 (Web Server issue), pp.W480-5. ⟨10.1093/nar/gkt461⟩ Article dans une revue hal-00819017v1
	Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs. Vladimir Reinharz , Yann Ponty , Jérôme Waldispühl Journal of Computational Biology, 2013, 20 (11), pp.905-19. ⟨10.1089/cmb.2013.0085⟩ Article dans une revue hal-00828062v1
	Non-redundant random generation algorithms for weighted context-free languages Andy Lorenz , Yann Ponty Theoretical Computer Science, 2013, Generation of Combinatorial Structures, 502, pp.177-194. ⟨10.1016/j.tcs.2013.01.006⟩ Article dans une revue inria-00607745v2
	A global sampling approach to designing and reengineering RNA secondary structures. Alex Levin , Mieszko Lis , Yann Ponty , Charles W O'Donnell , Srinivas Devadas Nucleic Acids Research, 2012, 40 (20), pp.10041-10052. ⟨10.1093/nar/gks768⟩ Article dans une revue hal-00733924v1
	Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches Evan Senter , Saad Sheikh , Ivan Dotu , Yann Ponty , Peter Clote PLoS ONE, 2012, 7 (12), pp.e50506. ⟨10.1371/journal.pone.0050506⟩ Article dans une revue hal-00769740v1
	Expected distance between terminal nucleotides of RNA secondary structures. Peter Clote , Yann Ponty , Jean-Marc Steyaert Journal of Mathematical Biology, 2012, 65 (3), pp.581-99. ⟨10.1007/s00285-011-0467-8⟩ Article dans une revue inria-00619921v1
	An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure. Jérôme Waldispühl , Yann Ponty Journal of Computational Biology, 2011, 18 (11), pp.1465-79. ⟨10.1089/cmb.2011.0181⟩ Article dans une revue hal-00681928v1

	Using the Fast Fourier Transform to accelerate the computational search for RNA conformational switches (extended abstract) Evan Senter , Saad Sheikh , Ivan Dotu , Yann Ponty , Peter Clote RECOMB - 17th Annual International Conference on Research in Computational Molecular Biology - 2013, Apr 2013, Beijing, China Communication dans un congrès hal-00766780v1
	Flexible RNA design under structure and sequence constraints using formal languages Yu Zhou , Yann Ponty , Stéphane Vialette , Jérôme Waldispühl , Yi Zhang ACM-BCB - ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics - 2013, Sep 2013, Bethesda, Washigton DC, United States Communication dans un congrès hal-00823279v2
	A linear inside-outside algorithm for correcting sequencing errors in structured RNA sequences Vladimir Reinharz , Yann Ponty , Jérôme Waldispühl RECOMB - 17th Annual International Conference on Research in Computational Molecular Biology - 2013, Apr 2013, Beijing, China Communication dans un congrès hal-00766781v1
	Impact Of The Energy Model On The Complexity Of RNA Folding With Pseudoknots Saad Sheikh , Rolf Backofen , Yann Ponty CPM - 23rd Annual Symposium on Combinatorial Pattern Matching - 2012, Juha Kärkkäinen, Jul 2012, Helsinki, Finland. pp.321--333, ⟨10.1007/978-3-642-31265-6_26⟩ Communication dans un congrès hal-00670232v3
	On the diversity of pattern distributions in rational language Cyril Banderier , Olivier Bodini , Yann Ponty , Hanane Tafat ANALCO - 12th Meeting on Analytic Algorithmics and Combinatorics - 2012, Jan 2012, Kyoto, Japan. pp.107--116 Communication dans un congrès hal-00643598v1
	An unbiased adaptive sampling algorithm for the exploration of RNA mutational landscapes under evolutionary pressure Jérôme Waldispühl , Yann Ponty RECOMB - 15th Annual International Conference on Research in Computational Molecular Biology - 2011, Mar 2011, Vancouver, Canada. pp.501-515, ⟨10.1007/978-3-642-20036-6_45⟩ Communication dans un congrès hal-00546847v1
	A Combinatorial Framework for Designing (Pseudoknotted) RNA Algorithms Yann Ponty , Cédric Saule WABI - 11th Workshop on Algorithms in Bioinformatics - 2011, 2011, Saarbrucken, Germany Communication dans un congrès inria-00601060v1