Accéder directement au contenu

Yann Guiguen

56
Documents
Identifiants chercheurs

Présentation

INRAE Research Director (DR1)

Publications

0000-0001-7126-5477
Image document

Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
Image document

Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region

Andrew J. Jasonowicz , Anna Simeon , Margot Zahm , Cédric Cabau , Christophe C. Klopp
Molecular Ecology Resources, 2022, pp.1-16. ⟨10.1111/1755-0998.13641⟩
Article dans une revue hal-03737450v1
Image document

An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1

A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Kang Du
Philosophical Transactions of the Royal Society B: Biological Sciences, 2021, 376 (1832), pp.20200089. ⟨10.1098/rstb.2020.0089⟩
Article dans une revue hal-03329961v1

Development of a polymerase chain reaction (PCR)-based genetic sex identification method in the chub mackerel Scomber japonicus and blue mackerel S. australasicus

Reoto Tani , Wataru Kawamura , Tetsuro Morita , Christophe C. Klopp , Marine Milhes
Fisheries Science, 2021, 87 (6), pp.785-793. ⟨10.1007/s12562-021-01548-z⟩
Article dans une revue hal-03338956v1
Image document

The rise and fall of the ancient northern pike master sex-determining gene

Qiaowei Pan , Romain Feron , Elodie Jouanno , Hugo Darras , Amaury Herpin
eLife, 2021, 10, pp.e62858. ⟨10.7554/eLife.62858⟩
Article dans une revue hal-03139073v2
Image document

A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus

Boudjema Imarazene , Kang Du , Séverine Beille , Elodie Jouanno , Romain Feron
Current Biology - CB, 2021, 31 (21), pp.4800-4809.e9. ⟨10.1016/j.cub.2021.08.030⟩
Article dans une revue hal-03337251v1
Image document

A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas)

Mateus Adolfi , Kang Du , Susanne Kneitz , Cédric Cabau , Margot Zahm
Scientific Reports, 2021, 11 (1), pp.21544. ⟨10.1038/s41598-021-01066-z⟩
Article dans une revue hal-03521507v1

RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data

Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno
Molecular Ecology Resources, 2021, 21 (5), pp.1715-1731. ⟨10.1111/1755-0998.13360⟩
Article dans une revue hal-03150035v1

Independent origin of XY and ZW sex determination mechanisms in Mosquitofish sister species

Verena A. Kottler , Romain Feron , Indrajit Nanda , Christophe C. Klopp , Kang Du
Genetics, 2020, 214 (1), pp.193-209. ⟨10.1534/genetics.119.302698⟩
Article dans une revue hal-02624941v1
Image document

The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

Kang Du , Matthias Stöck , Susanne Kneitz , Christophe C. Klopp , Joost Woltering
Nature Ecology & Evolution, 2020, 4 (6), pp.841-852. ⟨10.1038/s41559-020-1166-x⟩
Article dans une revue hal-02640938v1
Image document

Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno
BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩
Article dans une revue hal-02937875v1

Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩
Article dans une revue hal-02623895v1
Image document

Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
G3, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩
Article dans une revue hal-02624885v1
Image document

Draft genome assembly and annotation of the gila topminnow Poeciliopsis occidentalis

Mariana Mateos , Du Kang , Christophe C. Klopp , Hugues Parrinello , Mateo Garcia-Olazabal
Frontiers in Ecology and Evolution, 2019, 7, pp.1-7. ⟨10.3389/fevo.2019.00404⟩
Article dans une revue hal-02620825v1
Image document

The genome of the arapaima (Arapaima gigas) provides insights into gigantism, fast growth and chromosomal sex determination system

Kang Du , Sven Wuertz , Mateus Adolfi , Susanne Kneitz , Matthias Stöck
Scientific Reports, 2019, 9 (1), pp.1-11. ⟨10.1038/s41598-019-41457-x⟩
Article dans une revue hal-02090589v1
Image document

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno
PLoS Genetics, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩
Article dans une revue inserm-02279967v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Article dans une revue hal-01788671v1
Image document

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe
PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩
Article dans une revue hal-01506620v1
Image document

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Article dans une revue hal-01487023v1
Image document

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Article dans une revue hal-01193812v1

An immune-related gene evolved into the master sex-determining gene in Rainbow-trout, Oncorhynchus mykiss

Ayaka Yano , René R. Guyomard , Barbara B. Nicol , Elodie Jouanno , Edwige Quillet
Current Biology - CB, 2012, 22 (15), pp.1423-1428. ⟨10.1016/j.cub.2012.05.045⟩
Article dans une revue hal-01000319v1
Image document

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Article dans une revue hal-01205069v1
Image document

Sex chromosome evolution in Poeciliid fish

Manfred Schartl , Romain Feron , Alvaro Santacruz Roco , Susanne Kneitz , Verena A. Kottler
Paradigm shift in sex chromosome evolution, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB). DEU., Sep 2019, Berlin, Germany. 42 p., ⟨10.4126/FRL01-006417884⟩
Communication dans un congrès hal-02736598v1
Image document

Genome-wide approaches to elucidate evolution of sex determination systems and sex determining genes in fish

Qiaowei Pan , Romain Feron , Elodie Jouanno , Ming Wen , Boudjema Imarazene
8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States
Communication dans un congrès hal-02733991v1
Image document

Sex determination diversity in fish

M. Adolfi , Anabel Martinez-Bengochea , A.S. Roco , V. Kottler , - Du, K.
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p
Communication dans un congrès hal-02737595v1

Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France
Communication dans un congrès hal-01594642v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac
8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States
Communication dans un congrès hal-01607208v1

Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
19. European Testis Workshop, Jun 2016, Saint-Malo, France
Communication dans un congrès hal-02742995v1

Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Jouanno
7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States
Communication dans un congrès hal-02741864v1
Image document

Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
Eel genome symposium 2014, Jan 2014, Leiden, Netherlands
Communication dans un congrès hal-02743789v1

An immune-related gene evolved into a conserved master sex-determining gene in the salmonid fish family

Ayaka Yano , René Guyomard , Barbara Nicol , Elodie Jouanno , Edwige Quillet
Conférences Jacques Monod: “Avancées récentes sur l'évolution du sexe et des systèmes génétiques", May 2013, Roscoff, France
Communication dans un congrès hal-01194065v1

New insights into sex differentiation and determination for a better sex control in salmonids

Ayaka Yano , Barbara B. Nicol , René R. Guyomard , Elodie Jouanno , Edwige Quillet
Aqua 2012, European Aquaculture Society (EAS). BEL., Sep 2012, Prague, Czech Republic
Communication dans un congrès hal-02744513v1

Caractérisation d'un gène déterminant majeur du sexe conservé chez les salmonidés

Ayaka Yano , René R. Guyomard , Elodie Jouanno , Barbara B. Nicol , Christophe C. Klopp
3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. pp.109
Communication dans un congrès hal-01000327v1

New insights on sex determination in salmonids

Ayaka Yano , René Guyomard , Elodie Jouanno , Barbara Nicol , Edwige Quillet
6. International Symposium on The Biology of Vertebrate Sex Determination, Apr 2012, Kona (Hawaii), United States. pp.45
Communication dans un congrès hal-01019433v1

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier O. Bouchez , Cédric Cabeau , Olivier Kah
Animation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France
Communication dans un congrès hal-02747070v1

The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology research

Sandrine Aegerter , Daniel Baron , C. Carpentier , François Chauvigné , Christelle Dantec
Experimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom
Communication dans un congrès hal-02761230v1

Avancées du transcriptome sur 4 espèces : bovin, porc, poulet, truite

Florence Le Gac , Yann Guiguen , Madeleine Douaire , François Hatey , Gwenola Tosser-Klopp
Colloque Génomique des Animaux d'Elevage, May 2003, Seignosse-le-Pénon, France
Communication dans un congrès hal-02830199v1
Image document

Characterization of the sex determining system(s) of the Mexican tetra, Astyanax mexicanus

Boudjema Imarazene , Séverine Beille , Elodie Jouanno , Romain Feron , Celine Lopez-Roques
Paradigm shift in sex chromosome evolution, Sep 2019, Berlin, Germany. , pp.8-9, 2019, Workshop: Paradigm shift in sex chromosome evolution. ⟨10.4126/FRL01-006417884⟩
Poster de conférence hal-02418501v1

Evolution des gènes et des génomes dans une démarche de soutien à la diversification d’espèces aquacoles

Julien Bobe , Ingo Braasch , Jérémy Pasquier , Christophe C. Klopp , Hughes Parrinnello
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 2016, Crédits incitatifs financés entre 2011 et 2014
Poster de conférence hal-02740982v1

The PHYLOSEX project: Towards a better understanding of sex determination diversity and sex chromosome evolution in fish

Jennifer Anderson , Christophe C. Klopp , Hugues Parrinello , Laurent Journot , John H. Postlethwait
7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. 2015
Poster de conférence hal-02739921v1

The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles
Poster de conférence hal-02745585v1

Characterization of a conserved master sex-determining gene in salmonids

Yann Guiguen , Ayaka Yano , Barbara Nicol , Elodie Jouanno , René Guyomard
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-01267802v1

Gene annotation with evolutionary support in teleosts with a focus on the salmonid lineage

Julien Bobe , M. Westerfield , Pierre Pontarotti , Christophe C. Klopp , Laurent Journot
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-02746168v1

Gene expression profiling during gonadal differentiation in rainbow trout (Oncorhynchus mykiss) using a next generation sequencing (NGS) approach

Ayaka Yano , Elodie Jouanno , Christophe C. Klopp , Yann Guiguen
9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish
Poster de conférence hal-02747932v1

MicroRNAs expression during fish oogenesis and sex differentiation

Amélie A. Juanchich , Christophe C. Klopp , Yann Guiguen , Julien Bobe
9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish
Poster de conférence hal-02746432v1

Characterization of novel testis specific genes during sex differentiation in rainbow trout [i](Oncorhynchus mykiss)[/i] using a next generation sequencing (NGS) approach

Ayaka Yano , Elodie Dupin-De-Beyssat , Christophe C. Klopp , Yann Guiguen
44. Annual Meeting of the Society for the Study of Reproduction (SSR), Jul 2011, Portland, Oregon, United States. Society for the Study of Reproduction, Biology of Reproduction, 85 (SI), 2011, Biology of Reproduction
Poster de conférence hal-01205070v1
Image document

A 180 My-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes

Heiner Kuhl , Yann Guiguen , Christin Höhne , Eva Kreuz , Du Kang
2020
Pré-publication, Document de travail hal-03038088v1
Image document

RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data

Romain Feron , Qiaowei Pan , Ming Wen , Boudjema Imarazene , Elodie Jouanno
2020
Pré-publication, Document de travail hal-03048150v1
Image document

Sex chromosome and sex locus characterization in the goldfish, Carassius auratus

Ming Wen , Romain Feron , Qiaowei Pan , Justine Guguin , Elodie Jouanno
2019
Pré-publication, Document de travail hal-02790844v1
Image document

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno
2019
Pré-publication, Document de travail hal-02791042v1
Image document

Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity

Yusuke Takehana , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
2019
Pré-publication, Document de travail hal-02790965v1
Image document

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe C. Klopp , Céline Roques
2019
Pré-publication, Document de travail hal-02790966v1
Image document

Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
2017
Pré-publication, Document de travail hal-02791027v1

Analyse phylogénomique des duplications géniques chez les poissons téléostéens : une approche PAR RNASeq

Julien Bobe , Yann Guiguen , John H. Postlethwait , Laurent Journot , Christophe C. Klopp
[Rapport de recherche] ANR-10-GENM-017, University of Oregon; Centre National de la Recherche Scientifique (CNRS); Aix Marseille Université (AMU); INRA SCRIBE Station Commune de Recherche en Ichtyophysiologie. Biodiversité et Environnement. 2015
Rapport hal-02801550v1