Yann Audic

Documents

Publications

	High-Throughput Transcriptomics of Celf1 Conditional Knockout Lens Identifies Downstream Networks Linked to Cataract Pathology Archana D. Siddam , Matthieu Duot , Sarah Y. Coomson , Deepti Anand , Sandeep Aryal Cells, 2023, 12 (7), ⟨10.3390/cells12071070⟩ Article dans une revue hal-04093501v1
	An integrative analysis using iCLIP-seq and RNA-Seq to identify genes post-transcriptionally regulated by the cataract-linked RNA-binding protein CELF1 in the lens Matthieu Duot , Yann Audic , Agnès Méreau , Archana Siddam , Deepti Anand Investigative Ophthalmology & Visual Science, 2022, 63 (7), pp.647 Article dans une revue hal-03798672v1
	The RNA-binding proteins CELF1 and ELAVL1 cooperatively control the alternative splicing of CD44 Géraldine David , David Reboutier , Stéphane Deschamps , Agnès Méreau , William Taylor Biochemical and Biophysical Research Communications, 2022, 626, pp.79-84. ⟨10.1016/j.bbrc.2022.07.073⟩ Article dans une revue hal-03757363v1
	The Splicing Factor PTBP1 Represses TP63 γ Isoform Production in Squamous Cell Carcinoma William Taylor , Stéphane Deschamps , David Reboutier , Luc Paillard , Agnès Méreau Cancer Research Communications, 2022, 2 (12), pp.1669-1683. ⟨10.1158/2767-9764.CRC-22-0350⟩ Article dans une revue hal-04100176v1
	DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity Amandine Duchemin , Tina O’grady , Sarah Hanache , Agnès Méreau , Marc Thiry Nature Communications, 2021, 12 (1), pp.6648. ⟨10.1038/s41467-021-26932-2⟩ Article dans une revue hal-03442150v1
	Xenopus Resources Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support Marko Horb , Marcin Wlizia , Anita Abu-Daya , Sean Mcnamara , Dominika Gajdasik Frontiers in Physiology, 2019, 10, pp.387. ⟨10.3389/fphys.2019.00387⟩ Article dans une revue hal-02156285v1
	RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect Claire Domenger , Marine Allais , Virginie François , Adrien Leger , Emilie Lecomte Molecular Therapy - Nucleic Acids, 2018, 10, pp.277 - 291. ⟨10.1016/j.omtn.2017.12.008⟩ Article dans une revue inserm-01734756v1
	Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis Maud Noiret , Agnès Méreau , Gaelle Angrand , Marion Bervas , Carole Gautier-Courteille Developmental Biology, 2017, 426 (2), pp.449-459. ⟨10.1016/j.ydbio.2016.08.021⟩ Article dans une revue hal-01533247v1
	Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways Maud Noiret , Stéphanie Mottier , Gaelle Angrand , Carole Gautier-Courteille , Hubert Lerivray Developmental Biology, 2016, 409 (2), pp.489-501. ⟨10.1016/j.ydbio.2015.11.002⟩ Article dans une revue hal-01225487v1
	Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells Olivier Le Tonquèze , Bernhard Gschloessl , Vincent Legagneux , Luc Paillard , Yann Audic Genomics Data, 2016, 8, pp.97-103. ⟨10.1016/j.gdata.2016.04.009⟩ Article dans une revue hal-01304359v1
	A post-transcriptional mechanism that controls ptbp1 abundance in the Xenopus epidermis. Agnès Méreau , Vincent Anquetil , Hubert Lerivray , Justine Viet , Claire Schirmer Molecular and Cellular Biology, 2015, 35 (4), pp.758-68. ⟨10.1128/MCB.01040-14⟩ Article dans une revue hal-01117168v1
	zfp36 expression delineates both myeloid cells and cells localized to the fusing neural folds in Xenopus tropicalis Maud Noiret , Serge Hardy , Yann Audic International Journal of Developmental Biology, 2014, 58 (10-12), pp.751--755. ⟨10.1387/ijdb.140264ya⟩ Article dans une revue hal-01313754v1
	Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis. Maud Noiret , Yann Audic , Serge Hardy International Journal of Developmental Biology, 2012, 56 (9), pp.747-53. ⟨10.1387/ijdb.120017sh⟩ Article dans une revue inserm-00870920v1
	Inactivation of the Celf1 gene that encodes an RNA-binding protein delays the first wave of spermatogenesis in mice. Marie Cibois , Gaëlla Boulanger , Yann Audic , Luc Paillard , Carole Gautier-Courteille PLoS ONE, 2012, 7 (10), pp.e46337. ⟨10.1371/journal.pone.0046337⟩ Article dans une revue inserm-00869961v1
	CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Jérôme Saulière , Valentine Murigneux , Zhen Wang , Emélie Marquenet , Isabelle Barbosa Nature Structural and Molecular Biology, 2012, 19 (11), pp.1124-31. ⟨10.1038/nsmb.2420⟩ Article dans une revue hal-00982626v1
	Reverse genetics in eukaryotes. Serge Hardy , Vincent Legagneux , Yann Audic , Luc Paillard Biology of the Cell, 2010, 102 (10), pp.561-80. ⟨10.1042/BC20100038⟩ Article dans une revue inserm-00511685v1
	Chromosome wide analysis of CUGBP1 binding sites identifies the tetraspanin CD9 mRNA as a target for CUGBP1-mediated down-regulation. Olivier Le Tonquèze , Bernhard Gschloessl , Allen Namanda-Vanderbeken , Vincent Legagneux , Luc Paillard Biochemical and Biophysical Research Communications, 2010, 394 (4), pp.884-9. ⟨10.1016/j.bbrc.2010.03.020⟩ Article dans une revue inserm-00466153v1
	Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis. Antoine Graindorge , Olivier Le Tonquèze , Raphaël Thuret , Nicolas Pollet , Howard Beverley Osborne Nucleic Acids Research, 2008, 36 (6), pp.1861-70. ⟨10.1093/nar/gkn031⟩ Article dans une revue hal-00277442v1
	ElrA and AUF1 differentially bind cyclin B2 mRNA. Xun Guo , Francoise Gourronc , Yann Audic , Gillian Lyons-Levy , Therese Mitchell Biochemical and Biophysical Research Communications, 2008, 377 (2), pp.653-7. ⟨10.1016/j.bbrc.2008.10.029⟩ Article dans une revue inserm-00353157v1
	Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray. Antoine Graindorge , Raphaël Thuret , Nicolas Pollet , Howard Beverley Osborne , Yann Audic Nucleic Acids Research, 2006, 34 (3), pp.986-95. ⟨10.1093/nar/gkj492⟩ Article dans une revue hal-00289723v1
	CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding Julien Marquis , Luc Paillard , Yann Audic , Bertrand Cosson , Olivier Danos Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩ Article dans une revue hal-00478569v1
	CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Julien Marquis , Luc Paillard , Yann Audic , Bertrand Cosson , Olivier Danos Biochemical Journal, 2006, 400 (2), pp.291-301. ⟨10.1042/BJ20060490⟩ Article dans une revue inserm-00292923v1
	Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP. Howard Beverley Osborne , Carole Gautier-Courteille , Antoine Graindorge , Carine Barreau , Yann Audic Biochemical Society Transactions, 2005, 33 (Pt 6), pp.1541-3. ⟨10.1042/BST20051541⟩ Article dans une revue inserm-00292938v1
	Post-transcriptional regulation in cancer Yann Audic , Rebecca S Hartley Biology of the Cell, 2004, 96 (7), pp.479-498. ⟨10.1016/j.biolcel.2004.05.002⟩ Article dans une revue hal-02323363v1
	EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation. Carole Gautier-Courteille , Christophe Le Clainche , Carine Barreau , Yann Audic , Antoine Graindorge Development (Cambridge, England), 2004, 131 (24), pp.6107-17. ⟨10.1242/dev.01528⟩ Article dans une revue inserm-00292940v1
	An analysis of the sequence requirements of EDEN-BP for specific RNA binding. Sylvie Bonnet-Corven , Yann Audic , Francis Omilli , Howard Beverley Osborne Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩ Article dans une revue inserm-02325407v1
	Zygotic control of maternal cyclin A1 translation and mRNA stability Yann Audic , Mark Garbrecht , Brian Fritz , Michael Sheets , Rebecca S Hartley Developmental Dynamics, 2002, 225 (4), pp.511-521. ⟨10.1002/dvdy.10191⟩ Article dans une revue hal-02325355v1
	An analysis of the sequence requirements of EDEN-BP for specific RNA binding. Sylvie Bonnet-Corven , Yann Audic , Francis Omilli , Howard Beverley Osborne Nucleic Acids Research, 2002, 30 (21), pp.4667-74. ⟨10.1093/nar/gkf586⟩ Article dans une revue inserm-00292945v1
	Cyclin E morpholino delays embryogenesis in Xenopus. Yann Audic , B Boyle , M Slevin , Rebecca S Hartley Genesis, 2001, 30 (3), pp.107-9 Article dans une revue hal-02325458v1
	Zygotic Regulation of Maternal Cyclin A1 and B2 mRNAs Yann Audic , C. Anderson , R. Bhatty , Rebecca S Hartley Molecular and Cellular Biology, 2001, 21 (5), pp.1662-1671. ⟨10.1128/MCB.21.5.1662-1671.2001⟩ Article dans une revue hal-02325473v1
	Embryo Deadenylation Element-Dependent Deadenylation Is Enhanced by a cis Element Containing AUU Repeats Yann Audic , Francis Omilli , H. Beverley Osborne Molecular and Cellular Biology, 1998, 18 (12), pp.6879-6884. ⟨10.1128/mcb.18.12.6879⟩ Article dans une revue hal-02325486v1
	Postfertilization deadenylation of mRNAs in Xenopus laevis embryos is sufficient to cause their degradation at the blastula stage. Y. Audic , F. Omilli , H. B. Osborne Molecular and Cellular Biology, 1997, 17 (1), pp.209-18 Article dans une revue hal-00315978v1
	Design and use of easily made RNA size markers. Yann Audic , Francis Omilli , Howard Beverley Osborne , Laetieia Landais Biotechniques, 1997, 23 (4), pp.612-4, 616 Article dans une revue hal-00293007v1

	Identification of alternative spliced RNA targets of the cataract-linked RNA-binding protein CELF1: use of an multi-omics approach based an iCLIP-seq and RNA-seq Matthieu Duot , Carole Gautier-Courteille , Yann Audic , Agnès Méreau , Archana Siddam Annual Meeting of the Association-for-Research-in-Vision-and-Ophthalmology (ARVO), Apr 2023, New Orleans, United States. pp.1946 Communication dans un congrès hal-04286997v1
	Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs Carmen Maria Livi , Luc Paillard , Enrico Blanzieri , Yann Audic 6th International Conference on Practical Applications of Computational Biology & Bioinformatics, Mar 2012, Salamanca, Spain. pp.33-41, ⟨10.1007/978-3-642-28839-5_4⟩ Communication dans un congrès hal-01117163v1

	Storing the declaration of human rights on one data DNA molecule Gouenou Coatrieux , Chloé Berton , Elsa Dupraz , Belaid Hamoum , Thomas Derrien CominLabs day 2022, Oct 2022, Rennes, France. pp.1-1 Poster de conférence hal-03817852v1

	In vitro construction and long read sequencing analysis of a 24 kb long artificial DNA sequence encoding the Universal Declaration of the Rights of Man and of the Citizen Julien Leblanc , Olivier Boulle , Emeline Roux , Nicolas Jacques , Dominique Lavenier 2023 Pré-publication, Document de travail hal-04357386v1
	EXONIZATION BY THE EMERGENCE OF A CLEAVAGE-POLYADENYLATION SITE Agnès Méreau , Hubert Lerivray , Justine Viet , Serge Hardy , Luc Paillard 2022 Pré-publication, Document de travail hal-03867257v1
	THE SPLICING FACTOR PTBP1 REPRESSES TP63 γ ISOFORM PRODUCTION IN SQUAMOUS CELL CARCINOMA William Taylor , David Reboutier , Luc Paillard , Agnès Méreau , Yann Audic 2021 Pré-publication, Document de travail hal-03442152v1
	The RNA-binding proteins CELF1 and ELAVL1 cooperatively control RNA isoform production Géraldine David , David Reboutier , Stéphane Deschamps , Agnès Méreau , William Taylor 2020 Pré-publication, Document de travail hal-03085917v1

Yann Audic

Publications

High-Throughput Transcriptomics of Celf1 Conditional Knockout Lens Identifies Downstream Networks Linked to Cataract Pathology

An integrative analysis using iCLIP-seq and RNA-Seq to identify genes post-transcriptionally regulated by the cataract-linked RNA-binding protein CELF1 in the lens

The RNA-binding proteins CELF1 and ELAVL1 cooperatively control the alternative splicing of CD44

The Splicing Factor PTBP1 Represses TP63 γ Isoform Production in Squamous Cell Carcinoma

DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity

Xenopus Resources Transgenic, Inbred and Mutant Animals, Training Opportunities, and Web-Based Support

RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect

Robust identification of Ptbp1-dependent splicing events by a junction-centric approach in Xenopus laevis

Ptbp1 and Exosc9 knockdowns trigger skin stability defects through different pathways

Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells

A post-transcriptional mechanism that controls ptbp1 abundance in the Xenopus epidermis.

zfp36 expression delineates both myeloid cells and cells localized to the fusing neural folds in Xenopus tropicalis

Expression analysis of the polypyrimidine tract binding protein (PTBP1) and its paralogs PTBP2 and PTBP3 during Xenopus tropicalis embryogenesis.

Inactivation of the Celf1 gene that encodes an RNA-binding protein delays the first wave of spermatogenesis in mice.

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.

Reverse genetics in eukaryotes.

Chromosome wide analysis of CUGBP1 binding sites identifies the tetraspanin CD9 mRNA as a target for CUGBP1-mediated down-regulation.

Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis.

ElrA and AUF1 differentially bind cyclin B2 mRNA.

Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.

CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding.

Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP.

Post-transcriptional regulation in cancer

EDEN-BP-dependent post-transcriptional regulation of gene expression in Xenopus somitic segmentation.

An analysis of the sequence requirements of EDEN-BP for specific RNA binding.

Zygotic control of maternal cyclin A1 translation and mRNA stability

An analysis of the sequence requirements of EDEN-BP for specific RNA binding.

Cyclin E morpholino delays embryogenesis in Xenopus.

Zygotic Regulation of Maternal Cyclin A1 and B2 mRNAs

Embryo Deadenylation Element-Dependent Deadenylation Is Enhanced by a cis Element Containing AUU Repeats

Postfertilization deadenylation of mRNAs in Xenopus laevis embryos is sufficient to cause their degradation at the blastula stage.

Design and use of easily made RNA size markers.

Identification of alternative spliced RNA targets of the cataract-linked RNA-binding protein CELF1: use of an multi-omics approach based an iCLIP-seq and RNA-seq

Identification of Regulatory Binding Sites on mRNA Using in Vivo Derived Informations and SVMs

Storing the declaration of human rights on one data DNA molecule

In vitro construction and long read sequencing analysis of a 24 kb long artificial DNA sequence encoding the Universal Declaration of the Rights of Man and of the Citizen

EXONIZATION BY THE EMERGENCE OF A CLEAVAGE-POLYADENYLATION SITE

THE SPLICING FACTOR PTBP1 REPRESSES TP63 γ ISOFORM PRODUCTION IN SQUAMOUS CELL CARCINOMA

The RNA-binding proteins CELF1 and ELAVL1 cooperatively control RNA isoform production