Nombre de documents

316

CV de Xavier Pennec


Rapport30 documents

  • Martin Bauer, Martins Bruveris, Philipp Harms, Boris Khesin, Stephen Marsland, et al.. Math in the Cabin - Shape Analysis Workshop in Bad Gastein. [Research Report] Brunel University London; University of Vienna. 2014. <hal-01076953>
  • Xavier Pennec, Curzio Basso, Younes Boudjemline, Stanley Durrleman, Ender Konukoglu, et al.. Third generation disease models: Image analysis tools, pediatric heart diseases, inflammatory diseases and brain tumors. [Technical Report] 2010. <hal-00813777>
  • Stanley Durrleman, Xavier Pennec, Guido Gerig, Alain Trouvé, Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. [Research Report] RR-6952, INRIA. 2009, 17 p. <inria-00408293>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache. Sparse Approximation of Currents for Statistics on Curves and Surfaces. [Research Report] RR-6571, INRIA. 2008, pp.15. <inria-00286014v2>
  • Pierre Fillard, Xavier Pennec, Paul Thompson, Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. [Research Report] RR-6241, INRIA. 2007, pp.12. <inria-00159699v3>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. 2006, pp.23. <hal-00691828>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec, David Emsellem, Diane Lingrand. MOTEUR: a data-intensive service-based workflow manager. 2006, pp.37. <hal-00691832>
  • Vincent Arsigny, Olivier Commowick, Xavier Pennec, Nicholas Ayache. A Fast and Log-Euclidean Polyaffine Framework for Locally Affine Registration. [Research Report] RR-5865, INRIA. 2006, pp.46. <inria-00070161>
  • Vincent Arsigny, Xavier Pennec, Nicholas Ayache. Bi-invariant Means in Lie Groups. Application to Left-invariant Polyaffine Transformations. [Research Report] RR-5885, INRIA. 2006. <inria-00071383>
  • Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M. Hayashi, Paul M. Thompson, et al.. Measuring Brain Variability by Extrapolating Sparse Tensor Fields Measured on Sulcal Lines. [Research Report] RR-5887, INRIA. 2006. <inria-00071381>
  • Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, et al.. Towards a Statistical Atlas of Cardiac Fiber Architecture. [Research Report] RR-5906, INRIA. 2006. <inria-00071359>
  • Vincent Arsigny, Pierre Fillard, Xavier Pennec, Nicholas Ayache. Fast and Simple Computations on Tensors with Log-Euclidean Metrics.. [Research Report] RR-5584, INRIA. 2005, pp.42. <inria-00070423>
  • Pierre Fillard, Vincent Arsigny, Xavier Pennec, Nicholas Ayache. Joint Estimation and Smoothing of Clinical DT-MRI with a Log-Euclidean Metric. [Research Report] RR-5607, INRIA. 2005, pp.18. <inria-00070400>
  • Xavier Pennec, Pierre Fillard, Nicholas Ayache. A Riemannian Framework for Tensor Computing. RR-5255, INRIA. 2004, pp.34. <inria-00070743>
  • Xavier Pennec. Probabilities and Statistics on Riemannian Manifolds : A Geometric approach. RR-5093, INRIA. 2004. <inria-00071490>
  • Vincent Arsigny, Xavier Pennec. A novel family of geometrical transformations: Polyrigid transformations. Application to the registration of histological slices. RR-4837, INRIA. 2003. <inria-00071748>
  • Stephane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. Validation of a New 3D/2D Registration Criterion including Error Prediction. Application to Image Guided Radio-Frequency Ablation of the Liver Tumors. [Research Report] RR-4993, INRIA. 2003. <inria-00071585>
  • Sébastien Granger, Xavier Pennec. Statistiques exactes et approchées sur les normales aléatoires. RR-4533, INRIA. 2002. <inria-00072055>
  • Sébastien Granger, Xavier Pennec, Alexis Roche. Rigid Point-Surface Registration using Oriented Points and an EM Variant of ICP for Computer Guided Oral Implantology. RR-4169, INRIA. 2001. <inria-00072453>
  • Sébastien Ourselin, Xavier Pennec, Radu Stefanescu, Grégoire Malandain, Nicholas Ayache. Robust Registration of Multi-Modal Medical Images: Towards Real-Time Clinical Applications. RR-4333, INRIA. 2001. <inria-00072254>
  • Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, Sébastien Ourselin. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. [Research Report] RR-3980, INRIA. 2000, pp.24. <inria-00072667>
  • Xavier Pennec, Nicholas Ayache, Pascal Cachier. Tracking Brain Deformations in Time-Sequences of 3D US Images. [Research Report] RR-4091, INRIA. 2000. <inria-00072541>
  • Pascal Cachier, Xavier Pennec, Nicholas Ayache. Fast Non Rigid Matching by Gradient Descent: Study and Improvements of the "Demons" Algorithm. RR-3706, INRIA. 1999. <inria-00072962>
  • Xavier Pennec. Computing the Mean of Geometric Features Application to the Mean Rotation. RR-3371, INRIA. 1998. <inria-00073318>
  • Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, Christophe Sattonnet. Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. RR-3595, INRIA. 1998. <inria-00073084>
  • Alexis Roche, Grégoire Malandain, Nicholas Ayache, Xavier Pennec. Multimodal Image Registration by Maximization of the Correlation Ratio. RR-3378, INRIA. 1998. <inria-00073311>
  • Xavier Pennec, Nicholas Ayache. Randomness and Geometric Features in Computer Vision. RR-2820, INRIA. 1996. <inria-00073871>
  • Xavier Pennec, Jean-Philippe Thirion. Validation of 3-D Registration Methods based on Points and Frames. RR-2470, INRIA. 1995. <inria-00074205>
  • Xavier Pennec, Nicholas Ayache. An 0(n2) algorithm for 3D substructure matching of proteins. [Research Report] RR-2274, INRIA. 1994. <inria-00074397>
  • Xavier Pennec. Correctness and robustness of 3D rigid matching with bounded sensor error. RR-2111, INRIA. 1993. <inria-00074561>

Chapitre d'ouvrage12 documents

  • Xavier Pennec, Pierre Fillard. Statistical Computing on Non-Linear Spaces for Computational Anatomy. Paragios, Nikos and Duncan, Jim and Ayache, Nicholas. Handbook of Biomedical Imaging: Methodologies and Clinical Research, Springer, pp.147-168, 2015, 978-0-387-09748-0. <10.1007/978-0-387-09749-7_8>. <inria-00616201>
  • Marco Lorenzi, Xavier Pennec. Discrete Ladders for Parallel Transport in Transformation Groups with an Affine Connection Structure. Frank Nielsen. Geometric Theory of Information, Springer, pp.243-271, 2014, Signals and Communication Technology, <10.1007/978-3-319-05317-2_9>. <hal-00933229>
  • Kristin Mcleod, Tommaso Mansi, Maxime Sermesant, Giacomo Pongiglione, Xavier Pennec. Statistical Shape Analysis of Surfaces in Medical Images Applied to the Tetralogy of Fallot Heart. Frederic Cazals and Pierre Kornprobst. Modeling in Computational Biology and Biomedicine, Springer, pp.165-191, 2013, Lectures Notes in Mathematical and Computational Biology, 978-3-642-31207-6. <10.1007/978-3-642-31208-3_5>. <hal-00813850>
  • Xavier Pennec, Vincent Arsigny. Exponential Barycenters of the Canonical Cartan Connection and Invariant Means on Lie Groups. Frederic Barbaresco and Amit Mishra and Frank Nielsen. Matrix Information Geometry, Springer, pp.123-168, 2012, 978-3-642-30231-2 (Print) / 978-3-642-30232-9 (Online). <10.1007/978-3-642-30232-9_7>. <hal-00699361>
  • Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, et al.. Asclepios: a Research Project-Team at INRIA for the Analysis and Simulation of Biomedical Images. Bertot, Y. and Huet, G. and Lévy, J.-J. and Plotkin, G. From semantics to computer science: essays in honor of Gilles Kahn, Cambridge University Press, pp.415-436, 2009, <10.1017/CBO9780511770524.019>. <inria-00616094>
  • Cecile Germain-Renaud, Vincent Breton, Patrick Clarysse, Bertrand Delhay, Yann Gaudeau, et al.. Grid Analysis of Radiological Data. Mario Cannataro (Ed.). Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, IGI, pp.363-391, 2009, chapter 19, <10.4018/978-1-60566-374-6.ch019>. <hal-00683992>
  • Xavier Pennec. Statistical computing on manifolds: from Riemannian geometry to computational anatomy. Nielsen, Frank. Emerging Trends in Visual Computing, 5416, Springer, pp.347--386, 2008, LNCS, 978-3-642-00825-2. <10.1007/978-3-642-00826-9_16>. <inria-00616104>
  • Xavier Pennec, Nicholas Ayache, Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. Bankman, I. Handbook of Medical Image Processing and Analysis - New edition, Academic Press, pp.565--578, 2008, 13: 978-0-12-373904-9. <10.1016/B978-012373904-9.50044-1>. <inria-00616082>
  • Ender Konukoglu, Xavier Pennec, Olivier Clatz, Nicholas Ayache. Tumor Growth Modeling in Oncological Image Analysis. Bankman, I. Handbook of Medical Image Processing and Analysis - New edition, Academic Press, pp.297--307, 2008, 13: 978-0-12-373904-9. <10.1016/B978-012373904-9.50027-1>. <inria-00616081>
  • Xavier Pennec, Alexis Roche, Pascal Cathier, Nicholas Ayache. Non-Rigid MR/US Registration for Tracking Brain Deformations. Blum, R.S. and Liu, Zh. Multi-Sensor Image Fusion and Its Applications, 26, CRC Press - Taylor and Francis, pp.107--143, 2005, Signal Processing and Communications. <inria-00615672>
  • Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, et al.. Traitements d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. Faupel, M. and Smigielski, P. and Grzymala, R. Imagerie et Photonique pour les sciences du vivant et la médecine, Edition Fontis Media, pp.19-31, 2004, 2-88476-005-9. <inria-00615657>
  • Xavier Pennec, Nicholas Ayache, Jean-Philippe Thirion. Landmark-based registration using features identified through differential geometry. Bankman, I. Handbook of Medical Imaging - Processing and Analysis. I., Academic Press, pp.499--513, 2000. <inria-00615106>

Autre publication4 documents

  • Xavier Pennec, Sarang Joshi, Mads Nielsen. Mathematical Methods for Medical Imaging. Editorial of the special issue following the Mathematical Foundations of Computational Anatomy (M.. 2013, <10.1007/s11263-013-0650-z>. <hal-00858908>
  • Xavier Pennec. Proceedings of the MICCAI 2012 Workshops, Challenges and Tutorials. 4080 pages. 2012. <hal-00813857>
  • I. L. Dryden, Xavier Pennec, Jean-Marc Peyrat. Power Euclidean metrics for covariance matrices with application to diffusion tensor imaging. ArXiv e-prints. 2010. <hal-00813769>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. An optimized workflow enactor for data-intensive grid applications. I3S laboratory Research Report (I3S/RR-2005-32-FR), Sophia Antipolis, France. 2005, pp.17. <hal-00691833>

Direction d'ouvrage, Proceedings6 documents

  • Stanley Durrleman, Thomas P. Fletcher, Guido Gerig, Marc Niethammer, Xavier Pennec. Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data: Third International Workshop, STIA 2014, Held in Conjunction with MICCAI 2014, Boston, MA, USA, September 18, 2014, Revised Selected Papers. Durrleman, Stanley; Fletcher, Thomas P.; Gerig, Guido; Niethammer, Marc ; Pennec, Xavier STIA 2014 - Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, Sep 2014, Cambridge, United States. 8682, Springer International Publishing, pp.89, 2015, Lecture notes in computer science, 978-3-319-14904-2. <10.1007/978-3-319-14905-9>. <http://www.sci.utah.edu/stia2014-home.html>. <hal-01114150>
  • Xavier Pennec, Sarang Joshi, Mads Nielsen, Thomas P. Fletcher, Stanley Durrleman, et al.. Proceedings of the fifth international workshop on Mathematical Foundations of Computational Anatomy (MFCA 2015). Pennec, Xavier and Joshi, Sarang and Nielsen, Mads and Fletcher, Thomas P. and Durrleman, Stanley and Sommer, Stefan Mathematical Foundations of Computational Anatomy (MFCA 2015), Oct 2015, Munich, Germany. pp.173, 2015, <http://www-sop.inria.fr/asclepios/events/MFCA15/>. <hal-01203812>
  • Xavier Pennec, Sarang Joshi, Mads Nielsen, Thomas Fletcher, Stanley Durrleman, et al.. Proceedings of the Fourth International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Biological Shape Variability Modeling (MFCA 2013), Nagoya, Japan. Pennec, Xavier and Joshi, Sarang and Nielsen, Mads and Fletcher, Tom P. and Durrleman, Stanley and Sommer, Stefan. Inria, pp.132, 2013. <hal-00873631>
  • Xavier Pennec, Sarang Joshi, Mads Nielsen. Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability. Pennec, Xavier and Joshi, Sarang and Nielsen, Mads. HAL, pp.200, 2011. <hal-00813806>
  • Xavier Pennec, Sarang Joshi. Proceedings of the Second International Workshop on Mathematical Foundations of Computational Anatomy (MFCA'08) - Geometrical and Statistical Methods for Modelling Biological Shape Variability. Pennec, Xavier and Joshi, Sarang. MICCAI, Inria, Hal, pp.188, 2008. <hal-00846316>
  • Xavier Pennec, Sarang Joshi. Proceedings of the First International Workshop on Mathematical Foundations of Computational Anatomy (MFCA'06) - Geometrical and Statistical Methods for Modelling Biological Shape Variability. Pennec, Xavier and Joshi, Sarang. MICCAI - Inria, pp.187, 2006. <inria-00614989>

Communication dans un congrès176 documents

  • Roch Molléro, Xavier Pennec, Hervé Delingette, Nicholas Ayache, Maxime Sermesant. A Multiscale Cardiac Model for Fast Personalisation and Exploitation. Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2016, Athens, Greece. 9902, pp.174-182, 2015, MICCAI 2016, Lecture Notes in Computer Science. <http://www.miccai2016.org/>. <10.1007/978-3-319-46726-9_21>. <hal-01360908>
  • Marc-Michel Rohé, Maxime Sermesant, Xavier Pennec. Barycentric Subspace Analysis: a new Symmetric Group-wise Paradigm for Cardiac Motion Tracking. MICCAI 2016 - the 19th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2016, Athens, Greece. 9902 (448-456), pp.300-307, 2016, MICCAI 2016, Lecture Notes in Computer Science. <10.1007/978-3-319-46726-9_35>. <hal-01373706>
  • Marc-Michel Rohé, Roch Molléro, Maxime Sermesant, Xavier Pennec. Highly Reduced Model of the Cardiac Function for Fast Simulation. IEEE - IVMSP Workshop 2016, Jul 2016, Bordeaux, France. IEEE, pp.5, 2016, Image, Video, and Multidimensional Signal Processing Workshop (IVMSP), 2016 IEEE 12th. <10.1109/IVMSPW.2016.7528214>. <hal-01373715>
  • Xavier Pennec. Barycentric Subspaces and Affine Spans in Manifolds. Geometric Science of Information GSI'2015, Second International Conference, Oct 2015, Palaiseau, France. 9389, pp.12-21, Lecture Notes in Compuer Science. <http://www.gsi2015.org/>. <10.1007/978-3-319-25040-3_2>. <hal-01164463>
  • Kristin Mcleod, Maxime Sermesant, Philipp Beerbaum, Xavier Pennec. Descriptive and Intuitive Population-Based Cardiac Motion Analysis via Sparsity Constrained Tensor Decomposition. Medical Image Computing and Computer Assisted Intervention (MICCAI 2015), Oct 2015, Munich, Germany. 9351, pp.419-426, Lecture notes in computer science (LNCS). <http://www.miccai2015.org/>. <10.1007/978-3-319-24574-4_50>. <hal-01205535>
  • Marc-Michel Rohé, Nicolas Duchateau, Maxime Sermesant, Xavier Pennec. Combination of Polyaffine Transformations and Supervised Learning for the Automatic Diagnosis of LV Infarct. Statistical Atlases and Computational Modeling of the Heart (STACOM 2015), 2015, Munich, Germany. <hal-01206710>
  • Jan Bruse, Kristin Mcleod, Giovanni Biglino, Hopewell Ntsinjana, Claudio Capelli, et al.. A Non-parametric Statistical Shape Model for Assessment of the Surgically Repaired Aortic Arch in Coarctation of the Aorta: How Normal is Abnormal?. Statistical Atlases and Computational Modeling of the Heart (STACOM 2015), Oct 2015, Munich, Germany. <http://www.cardiacatlas.org/web/stacom2015/>. <hal-01205515>
  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, Xavier Pennec. Simulating Patient Specific Multiple Time-point MRIs From a Biophysical Model of Brain Deformation in Alzheimer's Disease. Workshop on Computational Biomechanics for Medicine - X, Oct 2015, Munich, France. 2015. <hal-01217080>
  • Stéphanie Allassonnière, Loïc Devilliers, Xavier Pennec. Estimating the Template in the Total Space with the Fréchet Mean on Quotient Spaces may have a Bias: a Case Study on Vector Spaces Quotiented by the Group of Translations. Mathematical Foundations of Computational Anatomy (MFCA'15), Oct 2015, Munich, Germany. pp.131-142, 2015, Proceedings of the fifth international workshop on Mathematical Foundation sof Computational Anatomy (MFCA'15). <http://www-sop.inria.fr/asclepios/events/MFCA15/>. <hal-01203816>
  • Roch Molléro, Dominik Neumann, Marc-Michel Rohé, Manasi Datar, Herve Lombaert, et al.. Propagation of Myocardial Fibre Architecture Uncertainty on Electromechanical Model Parameter Estimation: A Case Study. Functional Imaging and Modeling of the Heart, LNCS., Jun 2015, Maastricht, Netherlands. pp. 448-456, 2015, 8th International Conference, FIMH 2015, Maastricht, The Netherlands, June 25-27, 2015. Proceedings. <http://www.fimh2015.org/>. <10.1007/978-3-319-20309-6_51>. <hal-01241896>
  • Vikash Gupta, Grégoire Malandain, Nicholas Ayache, Xavier Pennec. A framework for creating population specific multimodal brain atlas using clinical T1 and diffusion tensor images. MICCAI 2015 Workshop on Computational Diffusion MRI (CDMRI'15), Oct 2015, Munich, Germany. pp.99-108, 2016, Computational Diffusion MRI. <http://cmic.cs.ucl.ac.uk/cdmri15/>. <10.1007/978-3-319-28588-7_9>. <hal-01261115>
  • Nina Miolane, Xavier Pennec. Biased estimators on Quotient spaces. Geometric Science of Information. Second International Conference, GSI 2015., Oct 2015, Palaiseau, France. Springer, 9389, pp.130-139, Lecture notes in computer science (LNCS). <10.1007/978-3-319-25040-3_15>. <hal-01203805>
  • Xavier Pennec. Barycentric Subspaces Analysis on Spheres. Mathematical Foundation sof Computational Anatomy (MFCA'15), Oct 2015, Munich, Germany. pp.71-82, 2015, Proceedings of the fifth international workshop on Mathematical Foundation sof Computational Anatomy (MFCA'15). <hal-01203815>
  • Nina Miolane, Xavier Pennec. A survey of mathematical structures for extending 2D neurogeometry to 3D image processing. MICCAI Workshop on Medical Computer Vision: Algorithms for Big Data (MICCAI-MCV 2015), Oct 2015, Munich, Germany. <https://sites.google.com/site/miccaimcv2015/home>. <hal-01203518>
  • Hugo Darmanté, Benoit Bugnas, Regis Bernard De Dompsure, Laurent Barresi, Nina Miolane, et al.. Analyse biométrique de l'anneau pelvien en 3 dimensions - à propos de 100 scanners. 89e Réunion annuelle de la SOFCOT, Nov 2014, Paris, France. 100 (7), 2014, Revue de Chirurgie Orthopédique et Traumatologique. <10.1016/j.rcot.2014.09.076>. <hal-01094711>
  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, Xavier Pennec. A Biophysical Model of Shape Changes due to Atrophy in the Brain with Alzheimer's Disease. P. GOLLAND; N. HATA; C. BARILLOT; J. HORNEGGER; R. HOWE. MICCAI 2014 - 17th International Conference Medical Image Computing and Computer-Assisted Intervention, Sep 2014, Boston, United States. Springer, 8674, pp.41-48, 2014, LNCS - Lecture Notes in Computer Science, Springer. <http://link.springer.com/chapter/10.1007/978-3-319-10470-6_6>. <10.1007/978-3-319-10470-6_6>. <hal-01006478>
  • Marco Lorenzi, Xavier Pennec, Nicholas Ayache, (adni) For The Alzheimer'S Disease Neuroimaging Initiative. Regional flux analysis of longitudinal atrophy in Alzheimer's disease. Alzheimer's Association International Conference, Jul 2014, Copenhagen, Denmark. 2014. <hal-01015978>
  • Nina Miolane, Xavier Pennec. Statistics on Lie groups : a need to go beyond the pseudo-Riemannian framework. MaxEnt 2014, Sep 2014, Amboise, France. AIP Proceedings, 1641, pp.59--66, Bayesian inference and Maximum Entropy Methods in Science and Engineering (MaxEnt 2014). <hal-01091515>
  • Christof Seiler, Xavier Pennec, Susan Holmes. Random Spatial Structure of Geometric Deformations and Bayesian Nonparametrics. GSI - Geometric Science of Information - 2013, Aug 2013, Paris, France. Springer, 8085, pp.120-127, 2013, Lecture Notes in Computer Science - LNCS; Geometric Science of Information. <10.1007/978-3-642-40020-9_12>. <hal-00847185>
  • Birkan Tunç, Alex Smith,, Demian Wasserman, Xavier Pennec, William M. Wells, et al.. Multinomial Probabilistic Fiber Representation for Connectivity Driven Clustering. Gee, J. C. and Joshi, Sarang and Pohl, Kilian M. and Wells, William M. and Zollei, L. IPMI 2013 - Information Processing in Medical Imaging, Jun 2013, Asilomar, United States. Springer, 7917, pp.730-741, 2013, LNCS; Information Processing in Medical Imaging. <10.1007/978-3-642-38868-2_61>. <hal-00846431>
  • Marco Lorenzi, Martina Bochetta, Nicholas Ayache, Xavier Pennec, Giovanni Frisoni. Conversion to MCI in healthy individuals with abnormal CSF Ab42 levels is associated with specific longitudinal morphological changes. Alzheimer's Association International Conference 2013, Jul 2013, Boston, United States. 9, issue 4 (supplement), pp.P596, 2013, Alzheimer's & Dementia: The Journal of the Alzheimer's Association. <10.1016/j.jalz.2013.05.1189>. <hal-00874722>
  • Xavier Pennec. Bi-invariant means on Lie groups with Cartan-Schouten connections. Nielsen, Frank and Barbaresco, F. Geometric Science of Information (GSI 2013), Aug 2013, Paris, France. Springer, 8085, pp.59-67, 2013, Lecture Notes in Computer Science - LNCS; Geometric Science of Information. <10.1007/978-3-642-40020-9_5>. <hal-00846373>
  • Marco Lorenzi, Xavier Pennec. Parallel Transport with Pole Ladder: Application to Deformations of time Series of Images. Nielsen, Frank and Barbaresco, F. GSI2013 - Geometric Science of Information, Aug 2013, Paris, France. Springer, 8085, pp.68-75, 2013, Lecture Notes in Computer Science - LNCS; Geometric Science of Information. <10.1007/978-3-642-40020-9_6>. <hal-00819898>
  • Kristin Mcleod, Christof Seiler, Maxime Sermesant, Xavier Pennec. Spatio-Temporal Dimension Reduction of Cardiac Motion for Group-Wise Analysis and Statistical Testing. Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab. MICCAI - Medical Image Computing and Computer Assisted Intervention - 2013, 2013, Nagoya, Japan. Springer, Heidelberg, 8150, pp.501-508, 2013, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - Part II. <10.1007/978-3-642-40763-5_62>. <hal-00840041>
  • Kristin Mcleod, Christof Seiler, Nicolas Toussaint, Maxime Sermesant, Xavier Pennec. Regional Analysis of Left Ventricle Function using a Cardiac-Specific Polyaffine Motion Model. Sébastien Ourselin and Daniel Rueckert and Nicolas Smith. Functional Imaging and Modeling of the Heart 2013 (FIMH), Jun 2013, London, United Kingdom. Springer, 7945, pp.483-490, 2013, Lecture Notes in Computer Science; Functional Imaging and Modeling of the Heart. <10.1007/978-3-642-38899-6_57>. <hal-00840042>
  • Marco Lorenzi, Bjoern Menze, Marc Niethammer, Nicholas Ayache, Xavier Pennec. Sparse Scale-Space Decomposition of Volume Changes in Deformations Fields. Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab. Medical Image Computing and Computer Aided Intervention (MICCAI), Sep 2013, Nagoya, Japan. Springer, 8150, pp.328-335, 2013, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - Part II. <10.1007/978-3-642-40763-5_41>. <hal-00845758>
  • Vikash Gupta, Nicholas Ayache, Xavier Pennec. Improving DTI Resolution from a Single Clinical Acquisition: A Statistical Approach using Spatial Prior. Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab. Proceedings of Medical Image Computing and Computer Assisted Intervention 2013 (MICCAI), Sep 2013, Nagoya, Japan. Springer, 8151, pp.477-484, 2013, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013 - Part III. <10.1007/978-3-642-40760-4_60>. <hal-00845927>
  • Marco Lorenzi, Xavier Pennec, Nicholas Ayache, Giovanni Frisoni. Disentangling the normal aging from the pathological Alzheimer's disease progression on cross-sectional structural MR images. MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), 2012, Nice, France. pp.145-154, 2012. <hal-00813836>
  • Marco Lorenzi, Nicholas Ayache, Xavier Pennec, Giovanni B. Frisoni, (adni) For The Alzheimer'S Disease Neuroimaging Initiative. Differentiating pathological brain atrophy from normal aging: a promising diagnostic tool for Alzheimer's disease. 2nd Virtual Physiological Human European Conference (VPH2012), Sep 2012, London, United Kingdom. 2012. <hal-00813842>
  • Nicolas Duchateau, Mathieu De Craene, Xavier Pennec, Beatriz Merino, Marta Sitges, et al.. Which Reorientation Framework for the Atlas-Based Comparison of Motion from Cardiac Image Sequences?. Durrleman, Stanley and Fletcher, Tom and Gerig, Guido and Niethammer, Marc. STIA 2012 (Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, Sep 2012, Nice, France. Springer, Heidelberg, 7570, pp.25-37, 2012, LNCS. <10.1007/978-3-642-33555-6_3>. <hal-00813822>
  • Vikash Gupta, Nicholas Ayache, Xavier Pennec. Towards higher resolution analysis of Clinical Brain Diffusion Images. 1st International Symposium on Deep Brain Connectomics, Sep 2012, Clermon-Ferrand, France. 2012. <hal-00813829>
  • Marco Lorenzi, Nicholas Ayache, Xavier Pennec, Giovanni B. Frisoni, (adni) For The Alzheimer'S Disease Neuroimaging Initiative. Disentangling the normal aging from the pathological Alzheimer's disease progression on structural MR images. 5th Clinical Trials in Alzheimer's Disease (CTAD'12), Oct 2012, Monte Carlo, Monaco. 2012. <hal-00813844>
  • Marco Lorenzi, Giovanni B. Frisoni, Nicholas Ayache, Xavier Pennec. Probabilistic Flux Analysis of Cerebral Longitudinal Atrophy. MICCAI workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), 2012, Nice, France. pp.256-265, 2012. <hal-00813846>
  • Adityo Prakosa, Kristin Mcleod, Maxime Sermesant, Xavier Pennec. Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence. Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenge (STACOM12), 2012, Nice, France. Springer, 7746, pp.178-187, 2012, Lecture Notes in Computer Science - LNCS; Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges. <10.1007/978-3-642-36961-2_21>. <hal-00813860>
  • Hervé Lombaert, Leo Grady, Xavier Pennec, Nicholas Ayache, Farida Cheriet. Spectral Demons - Image Registration via Global Spectral Correspondence. Computer Vision - ECCV 2012, 2012, Florence, Italy. Springer, 7573, pp.30-44, 2012, Lecture Notes in Computer Science - LNCS; Computer Vision - ECCV 2012 (2). <10.1007/978-3-642-33709-3_3>. <hal-00813833>
  • Hervé Lombaert, Leo Grady, Xavier Pennec, Jean-Marc Peyrat, Nicholas Ayache, et al.. Groupwise Spectral Log-Demons Framework for Atlas Construction. Medical Computer Vision (MCV'12) MICCAI workshop, 2012, Nice, France. Springer, 7766, pp.11-19, 2012, Lecture Notes in Computer Science - LNCS; Medical Computer Vision. <10.1007/978-3-642-36620-8_2>. <hal-00813834>
  • Marco Lorenzi, Nicholas Ayache, Xavier Pennec. Regional flux analysis of longitudinal atrophy in Alzheimer's disease. Proceedings of Medical Image Computing and Computer Assisted Intervention 2012 (MICCAI), 2012, Nice, France. Springer, Heidelberg, 7510, pp.739--746, 2012, Lecture Notes in Computer Science - LNCS. <10.1007/978-3-642-33415-3_91>. <hal-00813837>
  • Stefan Sommer, Mads Nielsen, Xavier Pennec. Sparsity and Scale: Compact Representations of Deformation for Diffeomorphic Registration. IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2012), Jan 2012, Breckenridge, Colorado, United States. 2012, <10.1109/MMBIA.2012.6164753>. <hal-00641357>
  • Marco Lorenzi, Xavier Pennec, Nicholas Ayache, Giovanni B. Frisoni. Spatio-temporal model of atrophy progression in healthy subjects at risk for Alzheimer's disease. Alzheimer's Association International Conference 2012, Jul 2012, Vancouver, Canada. 8, Issue 4, Supplement, pp.P340-P341, 2012, Alzheimer's & Dementia: The Journal of the Alzheimer's Association. <http://www.alzheimersanddementia.com/article/S1552-5260%2812%2901070-9/fulltext>. <10.1016/j.jalz.2012.05.938>. <hal-00876518>
  • Marco Lorenzi, Xavier Pennec, Nicholas Ayache, Giovanni B. Frisoni. Modeling the longitudinal atrophy in healthy subject at risk for Alzheimer's disease. Alzheimer's Association International Conference 2012, Jul 2012, Vancouver, Canada. 8, Issue 4, Supplement, pp.P340, 2012, Alzheimer's & Dementia: The Journal of the Alzheimer's Association. <http://www.alzheimersanddementia.com/article/S1552-5260%2812%2901069-2/fulltext>. <10.1016/j.jalz.2012.05.937>. <hal-00876516>
  • Kristin Mcleod, Christof Seiler, Maxime Sermesant, Xavier Pennec. A Near-Incompressible Poly-Affine Motion Model for Cardiac Function Analysis. Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function + a Cardiac Electrophysiological Simulation Challenge (STACOM+CESC'12), 2012, Nice, France. Springer, 7746, pp.288-297, 2013, Lecture Notes in Computer Science - LNCS. <10.1007/978-3-642-36961-2_33>. <hal-00813852>
  • Christof Seiler, Xavier Pennec, Mauricio Reyes. Simultaneous Multiscale Polyaffine Registration by Incorporating Deformation Statistics. MICCAI - Medical Image Computing and Computer Assisted Intervention, 2012, Nice, France. Springer, Heidelberg, 7511, pp.130--137, 2012, LNCS. <10.1007/978-3-642-33418-4_17>. <hal-00813867>
  • Stefan Sommer, François Lauze, Mads Nielsen, Xavier Pennec. Kernel Bundle EPDiff: Evolution Equations for Multi-Scale Diffeomorphic Image Registration. Bruckstein, A.M. and ter Haar Romeny, B. and Bronstein, A.M. and Bronstein, M.M. Scale Space and Variational Methods in Computer Vision, May 2011, Ein-Gedi, Israel. Springer, 6667, pp.677-688, 2011, Lecture Notes in Computer Science; Scale Space and Variational Methods in Computer Vision Scale Space and Variational Methods in Computer Vision - Third International Conference, SSVM 2011. <10.1007/978-3-642-24785-9_57>. <hal-00644965>
  • Kristin Mcleod, Adityo Prakosa, Tommaso Mansi, Maxime Sermesant, Xavier Pennec. An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue. Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart: Mapping Structure and Function (STACOM11), Sep 2011, Toronto, Canada. Springer, 7085, pp.55-67, 2012, Lecture Notes in Computer Science - LNCS. <10.1007/978-3-642-28326-0_6>. <hal-00813851>
  • Marco Lorenzi, Nicholas Ayache, Giovanni Frisoni, Xavier Pennec. Mapping the effects of Ab142 levels on the longitudinal changes in healthy aging: hierarchical modeling based on stationary velocity filds.. Fichtinger, Gabor and Martel, Anne and Peters, Terry. Proceedings of Medical Image Computing and Computer Assisted Intervention (MICCAI), Sep 2011, Toronto, Canada. Springer, 6892, pp.663-670, 2011, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011. <10.1007/978-3-642-23629-7_81>. <inria-00616213>
  • Stefan Sommer, François Lauze, Mads Nielsen, Xavier Pennec. A Multi-scale Kernel Bundle for LDDMM: Towards Sparse Deformation Description Across Space and Scales. Szekely, Gabor and Hahn, Horst. IPMI - 22nd International Conference on Information Processing in Medical Images- 2011, Jul 2011, Kloster Irsee, Germany. Springer, 6801, pp.624--635, 2011, Lecture Notes in Computer Science; Information Processing in Medical Imaging. <10.1007/978-3-642-22092-0_51>. <inria-00616209>
  • Marco Lorenzi, Nicholas Ayache, Xavier Pennec. Schilds Ladder for the parallel transport of deformations in time series of images. Szekely, G. and Hahn, H. IPMI - 22nd International Conference on Information Processing in Medical Images- 2011, Jul 2011, Kloster Irsee, Germany. Springer, 6801, pp.463--474, 2011, Lecture Notes in Computer Science; Information Processing in Medical Imaging. <10.1007/978-3-642-22092-0_38>. <inria-00616210>
  • Xavier Pennec, Marco Lorenzi. Which parallel transport for the statistical analysis of longitudinal deformations?. Colloque GRETSI '11, 2011, Bordeaux, France. 2011. <inria-00616204>
  • Marco Lorenzi, Xavier Pennec, Giovanni Frisoni. Monitoring the brain's longitudinal changes in clinical trials for Alzheimers disease: a robust and reliable non-rigid registration framework. Alzheimer's Association 2011 International Conference on Alzheimer's Disease (AAICAD), Jul 2011, Paris, France. 7, Issue 4, Supplement, pp.S376, 2011, Alzheimer's & Dementia: The Journal of the Alzheimer's Association. <10.1016/j.jalz.2011.05.1082>. <inria-00616203>
  • Marco Lorenzi, Xavier Pennec. Geodesics, Parallel Transport & One-parameter Subgroups for Diffeomorphic Image Registration. Pennec, Xavier and Joshi, Sarang and Nielsen, Mads. Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy - Geometrical and Statistical Methods for Modelling Biological Shape Variability, Sep 2011, Toronto, Canada. pp.64-74, 2011. <inria-00623919v2>
  • Christof Seiler, Xavier Pennec, Mauricio Reyes Aguirre. Geometry-Aware Multiscale Image Registration Via OBBTree-Based Polyaffine Log-Demons. MICCAI - Medical Image Computing and Computer Assisted Intervention - 2011, 2011, Toronto, Canada. Springer, Heidelberg, 6892, pp.631-638, 2011, Lecture Notes in Computer Science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011. <10.1007/978-3-642-23629-7_77>. <inria-00616215>
  • Christof Seiler, Xavier Pennec, Lucas Ritacco, Mauricio Reyes Aguirre. Femur Specific Polyaffine Model to Regularize the Log-Domain Demons Registration. Dawant, Benoit M. and Haynor, David R. Proceedings of SPIE Medical Imaging '11, 2011, Lake Buena Vista, Floride, United States. SPIE Publishing, 7962, Paper 7962-15, 2011, Medical Imaging 2011: Image Processing. <10.1117/12.878316>. <inria-00616216>
  • Viviana Siless, Pamela Guevara, Xavier Pennec, Pierre Fillard. Joint T1 and Brain Fiber Diffeomorphic Registration Using the Demons. Liu, Tianming and Shen, Dinggang and Ibanez, Luis and Tao, Xiaodong. Multimodal Brain Image Analysis First International Workshop, MBIA 2011, Held in Conjunction with MICCAI 2011, Sep 2011, Toronto, Canada. Springer Berlin / Heidelberg, 7012, pp.10-18, 2011, Lecture Notes in Computer Science; Multimodal Brain Image Analysis. <10.1007/978-3-642-24446-9_2>. <inria-00627971>
  • Michel Dojat, Mélanie Pélégrini-Issac, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, et al.. NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging. Organization for Human Brain Mapping (HBM'11), Jun 2011, Quebec, Canada. 2011. <hal-00813796>
  • Bernard Gibaud, Farooq Ahmad, Christian Barillot, Franck Michel, Bacem Wali, et al.. A federated system for sharing and reuse of images and image processing tools in neuroimaging. Computer Assisted Radiology and Surgery (CARS'11), Jun 2011, Berlin, Germany. 2011. <hal-00690921>
  • Natasha Lepore, Anand Joshi, Richard Leahy, Caroline Brun, Yi-Yu Chou, et al.. A New Combined Surface and Volume Registration. Dawant, Benoit M. and Haynor, David R. Medical Imaging 2010, Feb 2010, San Diego, United States. SPIE, 7623, pp.76231E-76231E-9, 2010, SPIE Proceedings; Medical Imaging 2010: Image Processing. <10.1117/12.844434>. <hal-00813772>
  • Marco Lorenzi, G. Frisoni, Nicholas Ayache, Xavier Pennec. Mapping longitudinal changes in the brain affected by Alzheimer's disease. VPH European Conference, Sep 2010, Brussels, Belgium. 2010. <hal-00813774>
  • Hans Lamecker, Xavier Pennec. Atlas to Image-with-Tumor Registration based on Demons and Deformation Inpainting. MICCAI Workshop on Computational Imaging Biomarkers for Tumors - From Qualitative to Quantitative (CIBT'2010), 2010, Beijing, China. 2010, The MIDAS Journal - Computational Imaging Biomarkers for Tumors (CIBT). <http://hdl.handle.net/10380/3208>. <inria-00616156>
  • Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, Nicholas Ayache. LogDemons Revisited: Consistent Regularisation and Incompressibility Constraint for Soft Tissue Tracking in Medical Images. Proc. of Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), part II, 2010, Beijing, China, China. 6362, pp.652-659, 2010, LNCS. <10.1007/978-3-642-15745-5_80>. <inria-00616162>
  • Caroline Brun, Natasha Leporé, Yi-Yu Chou, Xavier Pennec, Greig De Zubicaray, et al.. A 3D Statistical Fluid Registration Algorithm. Workshop on Machine Learning in Medical Imaging (MLMI'2010), 2010, Beijing, China. 2010. <inria-00616169>
  • Andrew Sweet, Xavier Pennec. Log-Domain Diffeomorphic Registration of Diffusion Tensor Images. Proc. of Workshop on Biomedical Image Registration 2010, 2010, Lübeck, Germany, Germany. Springer, 6204, pp.198-209, 2010, LNCS. <10.1007/978-3-642-14366-3_18>. <inria-00616163>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. Statistically assisted fluid image registration algorithm - SAFIRA. Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), 2010, Rotterdam, Netherlands. IEEE, pp.364--367, 2010, <10.1109/ISBI.2010.5490335>. <inria-00616165>
  • V. Gorbunova, Stanley Durrleman, Pechin Lo, Xavier Pennec, M. De Bruijne. Lung CT registration combining intensity, curves and surfaces. Proceedings of the Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), 2010, Rotterdam, Netherlands. IEEE, pp.340--343, 2010, <10.1109/ISBI.2010.5490341>. <inria-00616166>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, José Braga. Comparison of the endocast growth of chimpanzees and bonobos via temporal regression and spatiotemporal registration. Miccai Workshop on Spatio-Temporal Image Analysis for Longitudinal and Time-Series Image Data, 2010, Beijing, China, China. 2010. <inria-00616154>
  • Kristin Mcleod, Tommaso Mansi, Stanley Durrleman, Maxime Sermesant, Xavier Pennec. Statistical Analysis of the Anatomy: From Digital Patient to Digital Population. First VPH Conference (VPH2010), Jul 2010, Brussels, Belgium. 2010. <hal-00813775>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, José Braga. Measuring the inter-subject variability of endocast growth using shape regression and spatiotemporal registration. 79th Annual Meeting of the American Association of Physical Anthropologists, Apr 2010, Albuquerque, United States. 2010. <hal-00935056>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, José Braga. Measuring the inter-species variability of endocast growth using shape regression and spatiotemporal registration. Abstracts of the 79-th annual meeting of the American Assoc. of Physical Anthropologists (AAPA), April 2010, Albuquerque, Jul 2010, Albuquerque, United States. pp.78-79, 2010, <http://physanth.org/annual-meeting/2010/79th-annual-meeting-2010/2010%20AAPA%20Abstracts.pdf>. <hal-00875361>
  • Christof Seiler, Xavier Pennec, Mauricio Reyes Aguirre. Parametric regression of 3D medical images through the exploration of non-parametric regression models. Seventh IEEE International Symposium on Biomedical Imaging 2010 (ISBI'10), 2010, Rotterdam, Netherlands. IEEE, pp.452--455, 2010, Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on. <10.1109/ISBI.2010.5490313>. <inria-00616168>
  • Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, et al.. Grid-wide neuroimaging data federation in the context of the NeuroLOG project.. Tony Solomonides ; Ignacio Blanquer ; Vincent Breton ; Tristan Glatard ; Yannick Legré. HealthGrid'10, Jun 2010, Paris, France. IOS press, 159, pp.112-123, 2010, Studies in Health Technology and Informatics. <10.3233/978-1-60750-583-9-112>. <inserm-00512799>
  • Kristin Mcleod, Alfonso Caiazzo, Miguel Angel Fernández, Tommaso Mansi, Irene Vignon-Clementel, et al.. Atlas-Based Reduced Models of Blood Flows for Fast Patient-Specific Simulations. STACOM, Sep 2010, Beijin, China. Springer, 6364, pp.95-104, 2010, Lecture Notes in Computer Science; Statistical Atlases and Computational Models of the Heart. <10.1007/978-3-642-15835-3_10>. <inria-00517994>
  • Tommaso Mansi, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Nicholas Ayache, et al.. [In-silico models for the simulation and prediction of the cardiac function].. Congrès de la Société Francaise de Pédiatrie et de l'Association des Pédiatres de Langue Française (APLF), 2010, Paris, France. Elsevier, 17(6) (6), pp.611-2, 2010, Archives de Pédiatrie. <10.1016/S0929-693X(10)70022-1>. <inria-00616147>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. A Lagrangian formulation for statistical fluid registration. Proceedings of the Sixth IEEE International Symposium on Biomedical Imaging 2009 (ISBI'09), 2009, no address, United States. IEEE, pp.975--978, 2009, <10.1109/ISBI.2009.5193217>. <inria-00616141>
  • Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Heinz Handels. Application of a Probabilistic Statistical Shape Model to Automatic Segmentation. World Congress on Medical Physics and Biomedical Engineering, WC 2009, München, 2009, no address, Germany. Springer, 25/4, pp.2181--2184, 2009, IFMBE Proceedings. <10.1007/978-3-642-03882-2_579>. <inria-00616144>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Guido Gerig, Nicholas Ayache. Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets. Yang, Guang-Zhong and Hawkes, David and Rueckert, Daniel and Noble, Alison and Taylor, Chris. Medical Image Computing and Computer-Assisted Intervention (MICCAI'09), Part I, 2009, London, UK, United States. Springer, 5761, pp.297--304, 2009, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009. <10.1007/978-3-642-04268-3_37>. <inria-00616113>
  • Tommaso Mansi, Stanley Durrleman, Boris Bernhardt, Maxime Sermesant, Hervé Delingette, et al.. A Statistical Model of Right Ventricle in Tetralogy of Fallot for Prediction of Remodelling and Therapy Planning. Medical Image Computing and Computer Assisted Intervention (MICCAI'09), 2009, London, UK, United Kingdom. Springer, 5761, pp.214-221, 2009, Lecture Notes in Computer Science; Medical Image Computing and Computer Assisted Intervention 2009. <10.1007/978-3-642-04268-3_27>. <inria-00616175>
  • V. Gorbunova, Stanley Durrleman, Pechin Lo, Xavier Pennec, M. De Bruijne. Curve- and surface-based registration of lung CT images via currents. Brown, M. and de Bruijne, M. and van Ginneken, B. and Kiraly, A. and Kuhnigk, J.M. and Lorenz, C. and McClelland, J.R. and Mori, K. and Reeves, A.P. and Reinhardt, J. Second International Workshop on Pulmonary Image Analysis, 2009, London United Kingdom, United Kingdom. pp.15--25, 2009, Proc. of Second International Workshop on Pulmonary Image Analysis. <http://www.lungworkshop.org/2009/proc2009/15.pdf>. <inria-00616136>
  • Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, Nicholas Ayache. A statistical model of white matter fiber bundles based on currents.. Jerry L. Prince and Dzung L. Pham and Kyle J. Meyers. International Conference on Information Processing in Medical Imaging, Jul 2009, Williamsburg, Va, United States. Springer-Verlag, 5636, pp.114-25, 2009, Lecture Notes in Computer Science; Proceedings of Information Processing in Medical Imaging (IPMI'09). <10.1007/978-3-642-02498-6_10>. <inria-00502721>
  • Erik Pernod, Jean-Christophe Souplet, Javier Rojas Balderrama, Diane Lingrand, Xavier Pennec. Multiple Sclerosis Brain MRI Segmentation Workflow deployment on the EGEE Grid. MICCAI-Grid Workshop, Sep 2008, New York, United States. pp.55--64, 2008. <hal-00459138>
  • Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Symmetric Log-Domain Diffeomorphic Registration: A Demons-based Approach. Dimitris Metaxas and Leon Axel and Gabor Fichtinger and Gábor Székely. Medical Image Computing and Computer Assisted Intervention, Sep 2008, New York, United States. Springer, 5241, pp.754--761, 2008, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer Assisted Intervention (MICCAI 2008), part I. <10.1007/978-3-540-85988-8_90>. <inria-00280602>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. A tensor-based morphometry study of genetic influences on brain structure using a new fluid registration method. Metaxas, Dimitris and Axel, Leon. Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), 2008, New York, USA, United States. Springer, 5242, pp.914--921, 2008, Lecture Notes in Computer Science; Medical Image Computing and Computer Assisted Intervention (MICCAI'08). <10.1007/978-3-540-85990-1_110>. <inria-00616170>
  • Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, Heinz Handels. Comparison of Statistical Shape Models Built on Correspondence Probabilities and One-to-One Correspondences. Proc. SPIE Symposium on Medical Imaging '08, 2008, San Diego, USA, Germany. 6914, 2008, SPIE Conference Series. <10.1117/12.771136>. <inria-00616124>
  • Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, Heinz Handels. A Global Criterion for the Computation of Statistical Shape Model Parameters Based on Correspondence Probabilities. Springer,. Bildverarbeitung für die Medizin 2008, 2008, no address, Germany. 14, pp.277-282, 2008, Informatik aktuell. <10.1007/978-3-540-78640-5_56>. <inria-00616114>
  • Jean-Marc Peyrat, Hervé Delingette, Maxime Sermesant, Xavier Pennec, Chenyang Xu, et al.. Registration of 4D Time-Series of Cardiac Images with Multichannel Diffeomorphic Demons. Metaxas, Dimitris and Axel, Leon and Fichtinger, Gabor and Székely, Gábor. Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'08), 2008, New York, USA, United States. Springer, 5242, pp.972--979, 2008, Lecture Notes in Computer Science; Medical Image Computing and Computer Assisted Intervention (MICCAI'08). <10.1007/978-3-540-85990-1_117>. <inria-00616122>
  • B.T. Thomas Yeo, Tom Vercauteren, Pierre Fillard, Xavier Pennec, Polina Golland, et al.. DTI Registration with Exact Finite-Strain Differential. IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI'08), May 2008, Paris, France. IEEE, pp.700-703, 2008, <10.1109/ISBI.2008.4541092>. <inria-00272326>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. A new registration method based on Log-Euclidean Tensor metrics and its application to genetic studies. Proc. of the 2008 IEEE Int. Symp. on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, 2008, no address, France. pp.1115-1118, 2008, <10.1109/ISBI.2008.4541196>. <inria-00616171>
  • Natasha Leporé, Caroline Brun, Yi-Yu Chou, Agatha Lee, Marina Barysheva, et al.. Best individual template selection from deformation tensor minimization. Proc. of the 2008 IEEE Int. Symp. on Biomedical Imaging: From Nano to Macro (ISBI'08), Paris, France, May 14-17, 2008, no address, France. pp.460-463, 2008, <10.1109/ISBI.2008.4541032>. <inria-00616172>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache. Sparse approximation of currents for statistics on curves and surfaces.. Metaxas, D and Axel, L and Fichtinger, G and Szekely, G. MICCAI - 11th International Conference on Medical Image Computing And Computer Assisted Intervention, Sep 2008, New York, United States. Springer, 5242 (Pt 2), pp.390-398, 2008, Lecture Notes in Computer Science. <10.1007/978-3-540-85990-1_47>. <hal-00818375>
  • Javier Rojas Balderrama, Diane Lingrand, Erik Pernod, Jean-Christophe Souplet, Xavier Pennec, et al.. NeuroLOG: Neuroscience Application Workflows Execution on the EGEE Grid. EGEE conference, Sep 2008, Istanbul, Turkey. <hal-00461625>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. Volumetric Differences in Brain Structure in Identical and Fraternal Twins Computed using Riemannian Tensor-Based Morphometry. 13th Annual Meeting of the Organization for Human Brain Mapping (OHBM), Jun 2008, Melbourne, Australia. 2008. <hal-00875380>
  • Monica Hernandez, Salvador Olmos, Xavier Pennec. Comparing algorithms for diffeomorphic registration: Stationary LDDMM and Diffeomorphic Demons. Xavier Pennec. 2nd MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Oct 2008, New-York, United States. pp.24-35, 2008. <inria-00629883>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. A framework for evaluating the impact of compression on registration algorithms without gold standard. International Conference on Image Processing, Oct 2008, San Diego, California, United States. IEEE, pp.2912-2915, 2008, <10.1109/ICIP.2008.4712404>. <hal-00683112>
  • Tommaso Mansi, Maxime Sermesant, Martin Huber, Andrew Taylor, Giacomo Pongiglione, et al.. Modélisation électromécanique du coeur et analyse d'images. Congrés des Sociétés Françaises Médico-chirurgicales Pédiatriques, 2008, Paris, France. 15(5), pp.1032, 2008, Archives de Pédiatrie. <10.1016/S0929-693X(08)72422-9>. <hal-00875383>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache. A Forward Model to Build Unbiased Atlases from Curves and Surfaces. Xavier Pennec. 2nd MICCAI Workshop on Mathematical Foundations of Computational Anatomy, Oct 2008, New-York, United States. pp.68-79, 2008. <inria-00632875>
  • Tom Vercauteren, Xavier Pennec, Ezio Malis, Aymeric Perchant, Nicholas Ayache. Insight Into Efficient Image Registration Techniques and the Demons Algorithm: Insight Into Efficient Image Registration Techniques and the Demons Algorithm. Nico Karssemeijer and Boudewijn Lelieveldt. Information Processing in Medical Imaging, Jul 2007, Kerkrade, Netherlands. 4584/2007, pp.495-506, 2007, Lecture Notes in Computer Science; 20th International Conference, IPMI 2007, Kerkrade, The Netherlands, July 2-6, 2007. Proceedings. <10.1007/978-3-540-73273-0_41>. <inria-00165534>
  • Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Non-parametric Diffeomorphic Image Registration with the Demons Algorithm: Non-parametric Diffeomorphic Image Registration with the Demons Algorithm. Nicholas Ayache and Sébastien Ourselin and Anthony Maeder. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), Oct 2007, Brisbane, Australia. 4792/2007, pp.319-326, 2007, Lecture Notes in Computer Science. <10.1007/978-3-540-75759-7_39>. <inria-00166123>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. Clinical Evaluation of a Respiratory Gated Guidance System for Liver Punctures. Ayache, Nicholas and Ourselin, Sébastien and Maeder, Anthony J. Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), 2007, Brisbane, Australia, Australia. Springer, 4792, pp.77--85, 2007, Lecture Notes in Computer Science. <10.1007/978-3-540-75759-7_10>. <inria-00616044>
  • Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Heinz Handels, Nicholas Ayache. Shape Analysis Using a Point-Based Statistical Shape Model Built on Correspondence Probabilities. Ayache, Nicholas and Ourselin, Sébastien and Maeder, Anthony. Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), 2007, Brisbane, Australia, Australia. Springer, 4791, pp.959-967, 2007, Lecture Notes in Computer Science - LNCS. <10.1007/978-3-540-75757-3_116>. <inria-00616042>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Oscar Lopez, et al.. Comparison of Standard and Riemannian Fluid Registration for Tensor-Based Morphometry in HIV/AIDS. Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, 2007, Brisbane, Australia, United States. 2007. <inria-00616057>
  • Natasha Leporé, Caroline Brun, Xavier Pennec, Yi-Yu Chou, Oscar Lopez, et al.. Mean Template for Tensor-Based Morphometry using Deformation Tensors. Ayache, Nicholas and Ourselin, Sébastien and Maeder, Anthony. Proc. Medical Image Computing and Computer Assisted Intervention (MICCAI'07), 2007, Brisbane, Australia, Australia. Springer, 4792, pp.826-833, 2007, LNCS. <10.1007/978-3-540-75759-7_100>. <inria-00616043>
  • Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, et al.. Statistical Comparison of Cardiac Fibre Architectures. Proceedings of Functional Imaging and Modeling of the Heart 2007 (FIMH'07), 2007, no address, United States. 4466, pp.413-423, 2007, LNCS. <10.1007/978-3-540-72907-5_42>. <inria-00616049>
  • Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Heinz Handels, Nicholas Ayache. Point-Based Statistical Shape Models with Probabilistic Correspondences and Affine EM-ICP. Springer,. Bildverarbeitung fuer die Medizin 2007, 2007, no address, Germany. Springer, pp.434-438, 2007, Informatik aktuell. <10.1007/978-3-540-71091-2_87>. <inria-00616034>
  • Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Diffeomorphic Demons Using ITK's Finite Difference Solver Hierarchy. Insight Journal -- ISC/NA-MIC Workshop on Open Science at MICCAI 2007, 2007, no address, Australia. 2007. <inria-00616035>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Optimizing jobs timeouts on clusters and production grids. Cluster Computing and the Grid, May 2007, Rio de Janeiro, Brazil. pp.100-107, 2007, <10.1109/CCGRID.2007.78>. <hal-00683172>
  • Pierre Fillard, Xavier Pennec, Paul Thompson, Nicholas Ayache. Evaluating Brain Anatomical Correlations via Canonical Correlation Analysis of Sulcal Lines. Proc. of MICCAI'07 Workshop on Statistical Registration: Pair-wise and Group-wise Alignment and Atlas Formation, 2007, Brisbane, Australia, Australia. 2007. <inria-00616033>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache. Measuring brain variability via sulcal lines registration: a diffeomorphic approach.. Nicholas Ayache and Sébastien Ourselin and Anthony Maeder. International Conference on Medical Imaging and Computer Assisted Intervention, Oct 2007, Brisbane, Australia. Springer-Verlag, 4791 (Pt 1), pp.675-82, 2007, Lecture notes in computer science; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007. <10.1007/978-3-540-75757-3_82>. <inria-00502704>
  • Jonathan Boisvert, Xavier Pennec, Hubert Labelle, Farida Cheriet, Nicholas Ayache. Principal Spine Shape Deformation Modes Using Riemannian Geometry and Articulated Models. Proc of the IV Conference on Articulated Motion and Deformable Objects, Andratx, Mallorca, Spain, 11-14 July, 2006, no address, Spain. Springer, 4069, pp.346--355, 2006, LNCS. <10.1007/11789239_36>. <inria-00615592>
  • Jean-Marc Peyrat, Maxime Sermesant, Hervé Delingette, Xavier Pennec, Chenyang Xu, et al.. Towards a Statistical Atlas of Cardiac Fiber Structure. Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, 2006, no address, Denmark. Springer, 4190, pp.297--304, 2006, LNCS. <10.1007/11866565_37>. <inria-00615596>
  • Vincent Arsigny, Olivier Commowick, Xavier Pennec, Nicholas Ayache. A Log-Euclidean Polyaffine Framework for Locally Rigid or Affine Registration. Pluim, J.P.W. and Likar, B. and Gerritsen, F.A. Proceedings of the Third International Workshop on Biomedical Image Registration (WBIR'06), 2006, Utrecht, The Netherlands, Netherlands. Springer, 4057, pp.120-127, 2006, LNCS. <10.1007/11784012_15>. <inria-00615607>
  • Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, Hubert Labelle. Assessment of Brace Local Action on Vertebrae Relative Poses. Research into Spinal Deformities, 2006, no address, United States. 123, pp.372--378, 2006, Studies in Health Technology and Informatics. <inria-00615609>
  • Antoine Azar, Chenyang Xu, Xavier Pennec, Nicholas Ayache. An interactive Intensity- and Feature-Based Non-Rigid Registration Framework for 3D Medical Images. Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), 2006, Crystal Gateway Marriott, Arlington, Virginia, USA, United States. pp.824--827, 2006, <10.1109/ISBI.2006.1625045>. <inria-00615601>
  • Jonathan Boisvert, Xavier Pennec, Nicholas Ayache, Hubert Labelle, Farida Cheriet. 3D Anatomic Variability Assesment of the Scoliotic Spine Using Statistics on Lie Groups. Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), 2006, Crystal Gateway Marriott, Arlington, Virginia, USA, United States. IEEE, pp.750--753, 2006, <10.1109/ISBI.2006.1625025>. <inria-00615602>
  • J. Freund, D. Comaniciu, Y. Ioannis, P. Liu, Richard Mcclatchey, et al.. Health-e-Child: An Integrated Biomedical Platform for Grid-Based Pediatrics. Proc of Health-Grid 2006, 2006, Valancia, Spain, Spain. 120, pp.259-270, 2006, Studies in Health Technology and Informatics. <inria-00615591>
  • Vincent Arsigny, Olivier Commowick, Xavier Pennec, Nicholas Ayache. A Log-Euclidean Framework for Statistics on Diffeomorphisms. Proc. of the 9th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI'06), Part I, 2006, Copenhaguen, Denmark. 4190 pp.924--931, 2006, LNCS. <10.1007/11866565_113>. <inria-00615594>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Medical image registration algorithms assessment: Bronze Standard application enactment on grids using the MOTEUR workflow engine. HealthGrid conference (HealthGrid'06), Valencia, Spain, June 7-9, Jun 2006, Valencia, Spain. pp.93-103, 2006. <hal-00683188>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Probabilistic and dynamic optimization of job partitioning on a grid infrastructure. Parallel, Distributed and network-based Processing, Feb 2006, Montbéliard-Sochaux, France. pp.231-238, 2006, <10.1109/PDP.2006.61>. <hal-00683203>
  • Tristan Glatard, Xavier Pennec, Johan Montagnat. Performance evaluation of grid-enabled registration algorithms using bronze-standards. Medical Image Computing and Computer-Assisted Intervention (MICCAI 2006), Oct 2006, Copenhagen, Denmark. Springer, 4191, pp.152-160, 2006, Lecture Notes in Computer Science - LNCS. <10.1007/11866763_19>. <hal-00683176>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. An experimental comparison of Grid5000 clusters and the EGEE grid. Experimental Grid testbeds for the assessment of large-scale distributed applications and tools, Jun 2006, Paris, France. pp.1-10, 2006. <hal-00683199>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Efficient services composition for grid-enabled data-intensive applications. High Performance and Distributed Computing, Jun 2006, Paris, France. pp.333-334, 2006, <10.1109/HPDC.2006.1652170>. <hal-00683201>
  • Xavier Pennec. Left-Invariant Riemannian Elasticity: a distance on shape diffeomorphisms ?. Xavier Pennec and Sarang Joshi. 1st MICCAI Workshop on Mathematical Foundations of Computational Anatomy: Geometrical, Statistical and Registration Methods for Modeling Biological Shape Variability, Oct 2006, Copenhagen, Denmark. pp.1-13, 2006. <inria-00634098>
  • Vincent Arsigny, Olivier Commowick, Xavier Pennec, Nicholas Ayache. Statistics on Diffeomorphisms in a Log-Euclidean Framework. Xavier Pennec and Sarang Joshi. 1st MICCAI Workshop on Mathematical Foundations of Computational Anatomy: Geometrical, Statistical and Registration Methods for Modeling Biological Shape Variability, Oct 2006, Copenhagen, Denmark. pp.14-15, 2006. <inria-00635671>
  • Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Nicholas Ayache, Hubert Labelle. A novel framework for the 3D analysis of spine deformation modes.. Research into Spinal Deformities, 2006, no address, United States. IOS Press, 123, pp.176-81, 2006, Studies in Health Technology and Informatics. <http://www.booksonline.iospress.nl/Content/View.aspx?piid=3635>. <inria-00615608>
  • Pierre Fillard, Vincent Arsigny, Xavier Pennec, Nicholas Ayache. Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI 2006), 2006, Crystal Gateway Marriott, Arlington, Virginia, USA, United States. pp.786-789, 2006, <10.1109/ISBI.2006.1625034>. <inria-00615579>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. Grid-enabled workflows for data intensive medical applications. International Symposium on Computer-Based Medical Systems (CBMS), Jun 2005, Dublin, Ireland. IEEE, pp.537-542, 2005, <10.1109/CBMS.2005.61>. <hal-00691613>
  • Tom Vercauteren, Aymeric Perchant, Xavier Pennec, Nicholas Ayache. Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences: Mosaicing of Confocal Microscopic In Vivo Soft Tissue Video Sequences. Jim Duncan and Guido Gerig. Medical Image Computing and Computer-Assisted Intervention, Oct 2005, Palm Springs, United States. pp.753-760, Lecture Notes in Computer Science; Proceedings of the 8th International Conference on Medical Image Computing and Computer-Assisted Intervention. <10.1007/11566465_93>. <inria-00166791>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. A complete Augmented Reality Guidance System for Liver Punctures: First Clinical Evaluation. Duncan, Jim and Gerig, Guido. Proceedings of the 8th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Part I, 2005, Palm Springs, CA, USA, October 26-29, United States. Springer, 3749, pp.539--547, 2005, LNCS. <10.1007/11566465_67>. <inria-00616011>
  • Heike Hufnagel, Xavier Pennec, Grégoire Malandain, Hans Handels, Nicholas Ayache. Non-Linear 2D and 3D Registration Using Block-Matching and B-Splines. Bildverarbeitung fuer die Medizin 2005, 2005, Heidelberg, Germany, Germany. Springer, pp.325-329, 2005, Informatik aktuell. <10.1007/3-540-26431-0_67>. <inria-00615991>
  • Pierre Fillard, Vincent Arsigny, Nicholas Ayache, Xavier Pennec. A Riemannian Framework for the Processing of Tensor-Valued Images. Olsen, Ole Fogh and Florak, Luc and Kuijper, Arjan. Deep Structure, Singularities, and Computer Vision (DSSCV), 2005, no address, Netherlands. Springer, pp.112--123, 2005, LNCS. <10.1007/11577812_10>. <inria-00615994>
  • Olivier Commowick, Radu Stefanescu, Pierre Fillard, Vincent Arsigny, Nicholas Ayache, et al.. Incorporating statistical measures of anatomical variability in atlas-to-subject registration for conformal brain radiotherapy.. J. Duncan and G. Gerig. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005, Oct 2005, Palm Springs, CA, United States. Springer-Verlag, 3750 (Pt 2), pp.927-34, 2005, Lecture Notes in Computer Science - LNCS; Medical Image Computing and Computer-Assisted Intervention - MICCAI 2005. <10.1007/11566489_114>. <inria-00502673>
  • Xavier Pennec, R. Stefanescu, V. Arsigny, Pierre Fillard, Nicholas Ayache. Riemannian elasticity: a statistical regularization framework for non-linear registration.. J. Duncan and G. Gerig. International Conference on Medical Image computing and Computer-Assisted Intervention, Oct 2005, Palm Springs, CA, United States. Springer-Verlag, 3750 (Pt 2), pp.943-50, 2005, Lecture notes in computer science; Medical image computing and computer-assisted intervention. Part II. <10.1007/11566489_116>. <inria-00502675>
  • Vincent Arsigny, Pierre Fillard, Xavier Pennec, Nicholas Ayache. Fast and simple calculus on tensors in the log-Euclidean framework.. J. Duncan and G. Gerig. International Conference on Medical Image computing and Computer-Assisted Intervention, Oct 2005, Palm Springs, CA, United States. Springer-Verlag, 3749 (Pt 1), pp.115-22, 2005, Lecture notes in computer science; Medical image computing and computer-assisted intervention. Part I. <10.1007/11566465_15>. <inria-00502669>
  • Pierre Fillard, Vincent Arsigny, Xavier Pennec, Paul M. Thompson, Nicholas Ayache. Extrapolation of sparse tensor fields: application to the modeling of brain variability.. Gary E. Christensen and Milan Sonka. International Conference on Information Processing in Medical Imaging, Jul 2005, Glenwood Springs, CO, United States. Springer-Verlag, 3565, pp.27-38, 2005, Lecture notes in computer science; Information processing in medical imaging. <10.1007/11505730_3>. <inria-00502688>
  • Cécile Germain, Vincent Breton, Patrick Clarysse, Yann Gaudeau, Tristan Glatard, et al.. Grid-enabling medical image analysis. Cluster Computing and Grid 2005 (CCGrid05) Bio-Medical Computations on the Grid (Bio-Grid), May 2005, Cardiff, United Kingdom. Springer Netherlands, 19 (4/5), pp.339-349, 2005, <10.1007/s10877-005-0679-9>. <hal-00166971>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. An Accuracy Certified Augmented Reality System for Therapy Guidance. Proc. of the 8th European Conference on Computer Vision (ECCV 04), Part III, 2004, Prague, Czech Republic. Springer, 3023, pp.79--91, 2004, LNCS. <10.1007/b97871>. <inria-00615985>
  • Radu Stefanescu, Xavier Pennec, Nicholas Ayache. A Grid Service for the Interactive Use of a Parallel Non-Rigid Registration Algorithm. Proc. of HealthGrid 2004, 2004, Clermont-Ferrand, France. European Commission, DG Information Society, 2004. <inria-00615978>
  • Luc Soler, Stéphane Nicolau, Jérôme Schmid, Christophe Koehl, Jacques Marescaux, et al.. Virtual Reality and Augmented Reality in Digestive Surgery. Proc. of IEEE International Symposium on Mixed and Augmented Reality (ISMAR'04), 2004, no address, United States. pp.278--279, 2004, <10.1109/ISMAR.2004.64>. <inria-00615979>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. An Augmented Reality System to Guide Liver Punctures. Workshop AMI-ARCS 2004 held in conjunction with MICCAI'04, 2004, no address, France. pp.77--86, 2004. <inria-00615990>
  • Derek Hill, Xavier Pennec, Michael Burns, Michael Parkin, Jo Hajnal, et al.. Intraoperable Medical Image Registration Grid Service. Proc. of HealthGrid 2004, 2004, Clermont-Ferrand, France. European Commission, DG Information Society, 2004. <inria-00615977>
  • Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, et al.. Virtual Reality, Augmented Reality and Robotics in surgical procedures of the liver. Buzug, T.M. and Lueth, T.C. Perspectives in Image-guided Surgery. Proceedings of the Scientific Workshop on Medical Robotics, Navigation and Visualization (MRNV) 2004, 2004, RheinAhrCampus Remagen, Germany, Germany. World Scientific, pp.476--484, 2004. <inria-00615975>
  • Stéphane Nicolau, Jérôme Schmid, Xavier Pennec, Luc Soler, Nicholas Ayache. An Augmented Reality and Virtuality Interface for a Puncture Guidance System: Design and Validation on an Abdominal Phantom. Guang-Zhong Yang and Tianzi Jiang. MIAR - Medical Imaging and Augmented Reality - 2004, Aug 2004, Beijing, China. Springer, 3150, pp.302--310, 2004, Lecture Notes in Computer Science - LNCS; Medical Imaging and Augmented Reality - Second International Workshop, MIAR 2004. <10.1007/b99698>. <hal-00875246>
  • Guillaume Flandin, Xavier Pennec, Alexis Roche, Will Penny, Nicholas Ayache, et al.. Multi-subject anatomo-functional classification for activation studies. NeuroImage (HBM'04), 2004, Budapest, Hungary, Hungary. 2004. <inria-00615974>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. Vision augmentée de structures anatomiques abdominales recalées par stéréoscopie. Actes du quatrième colloque francophone. Méthodes et Techniques Optiques pour l'Industrie, 2003, Belfort, France. 1, pp.413--418, 2003. <inria-00615934>
  • Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, Nicholas Ayache. Guidage de ponctions percutanées à l'aide d'un système de vision basé sur une méthode de recalage 3D/2D. Actes du colloque Imagerie pour les sciences du vivant et de l'ingénieur (IMVIE03), 2003, Strasbourg, France. 2003. <inria-00615933>
  • Radu Stefanescu, Xavier Pennec, Nicholas Ayache. Parallel non-rigid registration on a cluster of workstations. Norager, Sofie. Proc. of HealthGrid'03, 2003, Lyon, France. European Commission, DG Information Society, 2003. <inria-00615956>
  • Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, Nicholas Ayache. Augmented Reality guided radio-frequency tumor ablation. Proceedings of Augmented and Virtual Reality Workshop (AVIR03), 2003, Genève, Switzerland. pp.34-35, 2003. <inria-00615957>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, Nicholas Ayache. Evaluation of a New 3D/2D Registration Criterion for Liver Radio-Frequencies Guided by Augmented Reality. Ayache, Nicholas and Delingette, Hervé. International Symposium on Surgery Simulation and Soft Tissue Modeling (IS4TM'03), 2003, Juan-les-Pins, France, France. Springer, 2673, pp.270--283, 2003, Lecture Notes in Computer Science. <10.1007/3-540-45015-7_26>. <inria-00615945>
  • Radu Stefanescu, Xavier Pennec, Nicholas Ayache. Grid Enabled Non-Rigid Registration with a Dense Transformation and A Priori Information. Randy E. Ellis and Terry M. Peters. MICCAI - Medical Image Computing and Computer Assisted Interventions 2003, Oct 2003, Montreal, Canada. Springer, 2879, pp.804--811, 2003, Lecture Notes in Computer Science - LNCS; Proc. of MICCAI'03, Part II. <10.1007/978-3-540-39903-2_98>. <hal-00875275>
  • Guillaume Flandin, Will Penny, Xavier Pennec, Nicholas Ayache, Jean-Baptiste Poline. A multisubject anatomo-functional parcellation of the brain. Paus, Tomas and Bullmore, Ed and Cohen, Jonathan D. NeuroImage (HBM'03), 2003, New York, USA, United States. Academic Press, 2003. <inria-00615951>
  • Vincent Arsigny, Xavier Pennec, Nicholas Ayache. Polyrigid and Polyaffine Transformations: A New Class of Diffeomorphisms for Locally Rigid or Affine Registration. Randy E. Ellis and Terry M. Peters. Proc. of MICCAI'03, Part II, Oct 2003, Montreal, Canada. Springer, 2879 (2), pp.829--837, 2003, Lecture Notes in Computer Science - LNCS; Medical Image Compuyting and Computer Assisted Interventions 2003 (MICCAI'03), Part II. <10.1007/b93811>. <inria-00615668>
  • Sébastien Ourselin, Radu Stefanescu, Xavier Pennec. Robust registration of multi-modal images: towards real-time clinical applications. Dohi, Takeyoshi and Kikinis, Ron. Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), 2002, Tokyo, Japan. Springer, 2489, pp.140--147, 2002, LNCS. <10.1007/3-540-45787-9_18>. <inria-00615675>
  • Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, Nicholas Ayache. Biomechanical Model Construction from Different Modalities: Application to Cardiac Images. Dohi, Takeyoshi and Kikinis, Ron. Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), 2002, Tokyo, Japan. Springer, 2488, pp.714--721, 2002, LNCS. <10.1007/3-540-45786-0_88>. <inria-00615925>
  • Sébastien Granger, Xavier Pennec. Multi-scale EM-ICP: A Fast and Robust Approach for Surface Registration. Heyden, A. and Sparr, G. and Nielsen, M. and Johansen, P. European Conference on Computer Vision (ECCV 2002), 2002, Copenhagen, Denmark, Denmark. Springer, 2353, pp.418--432, 2002, LNCS. <10.1007/3-540-47979-1_28>. <inria-00615911>
  • Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, et al.. Parcellation of brain images with anatomical and functional constraints for fMRI data analysis. IEEE International Symposium on Biomedical Imaging, 2002, Washington, USA, United States. pp.907--910, 2002, <10.1109/ISBI.2002.1029408>. <inria-00615916>
  • Guillaume Flandin, Ferath Kherif, Xavier Pennec, Grégoire Malandain, Nicholas Ayache, et al.. Improved Detection Sensitivity in Functional MRI Data using a Brain Parcelling Technique. Dohi, Takeyoshi and Kikinis, Ron. Medical Image Computing and Computer-Assisted Intervention (MICCAI'02), 2002, Tokyo, Japan. Springer, 2488, pp.467--474, 2002, LNCS. <10.1007/3-540-45786-0_58>. <inria-00615921>
  • Guillaume Flandin, Ferath Kherif, Xavier Pennec, Denis Rivière, Nicholas Ayache, et al.. A new representation of fMRI data using anatomo-functional constraints. NeuroImage (HBM'02), 2002, Sendai, Japan, Japan. 2002. <inria-00615928>
  • Pierre Jannin, J.M. Fitzpatrick, David Hawkes, Xavier Pennec, R. Sahidi, et al.. White paper: validation of medical image processing in image-guided therapy. Lemke, H.U. and Vannier, M.W. and Inamura, K. and Farman, A.G. and Doi, K. and Reiber, J.H.C. Proc. of Int. Conf. on Computer Assisted Radiology (CARS 2002), 2002, no address, Germany. Springer, pp.299--305, 2002, <10.1007/978-3-642-56168-9_49>. <inria-00615930>
  • Xavier Pennec, Pascal Cachier, Nicholas Ayache. Tracking brain deformations in time sequences of 3D US images. Insana, M.I. and Leahy, R.M. Proc. of IPMI'01, 2001, Davis, CA, USA, United States. Springer, 2082, pp.169--175, 2001, LNCS. <10.1007/3-540-45729-1_16>. <inria-00615677>
  • Sébastien Granger, Xavier Pennec, Alexis Roche. Rigid Point-Surface Registration Using an EM variant of ICP for Computer Guided Oral Implantology. Niessen, W.J. and Viergever, M.A. 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. 2208, pp.752--761, 2001, LNCS. <10.1007/3-540-45468-3_90>. <inria-00615679>
  • Xavier Pennec, Nicholas Ayache, Alexis Roche, Pascal Cachier. Non-rigid MR/US registration for tracking brain deformations. Press, IEEE Computer Society. Proc of Int. Workshop on Medical Imaging and Augmented Reality (MIAR 2001), 10-12 June 2001, Shatin, Hong Kong, 2001, Shatin, Hong Kong, Hong Kong SAR China. pp.79--86, 2001, <10.1109/MIAR.2001.930268>. <inria-00615898>
  • Nicholas Ayache, Xavier Pennec, Pascal Cachier. Fusing 3-D ultrasound and MRI for real-time image-guided neurosurgery. Medical Physics and Clinical Engineering Conference, 2001, no address, United States. 17(3), 2001, Physica Medica (European journal of Medical Physics). <inria-00615896>
  • Pascal Cachier, Jean-François Mangin, Xavier Pennec, Denis Rivière, Dimitri Papadopoulos-Orfanos, et al.. Multisubject Non-Rigid Registration of Brain MRI using Intensity and Geometric Features. Niessen, W.J. and Viergever, M.A. 4th Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'01), 2001, Utrecht, The Netherlands, Netherlands. 2208, pp.734--742, 2001, LNCS. <10.1007/3-540-45468-3_88>. <inria-00615871>
  • D. Etienne, A. Stankoff, Xavier Pennec, Sébastien Granger, A. Lacan, et al.. A new approach for dental implant aided surgery. A pilot evaluation. Lemke, H.U. and Vannier, M.W. and Inamura, K. and Farman, A.G. and Doi, K. Proc. of CARS'2000, 2000, no address, Germany. Elsevier, pp.927--931, 2000. <inria-00615854>
  • Alexis Roche, Xavier Pennec, M. Rudolph, D.P. Auer, Grégoire Malandain, et al.. Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. DiGioia, A.M. and Delp, S. Proc. of the 3rd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'00), 2000, Pittsburgh, Pennsylvanie, USA, United States. 1935, pp.567--577, 2000, LNCS. <10.1007/978-3-540-40899-4_58>. <inria-00615680>
  • Pascal Cachier, Xavier Pennec. 3D Non-Rigid Registration by Gradient Descent on a Gaussian-Windowed Similarity Measure using Convolutions. Proc. of IEEE Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA'00), 2000, Hilton Head Island, South Carolina, USA, United States. IEEE Computer society, pp.182--189, 2000, <10.1109/MMBIA.2000.852376>. <inria-00615855>
  • D. Etienne, A. Stankoff, Xavier Pennec, Sébastien Granger, A. Lacan, et al.. A new approach for dental implant aided surgery.. 4th Congresson Panamerica de Periodontologia, Aug 2000, Santiago, Chile. 2000. <hal-00875388>
  • Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec. Automatic Alignment of Histological Sections. Pernus, F. and Kovacic, S. and Stiehl, H.S. and Viergever, M.A. International Workshop on Biomedical Image Registration, WBIR'99, 1999, Bled (Slovénie), Slovenia. pp.1--13, 1999. <inria-00615684>
  • Xavier Pennec, Pascal Cachier, Nicholas Ayache. Understanding the ''Demon's Algorithm'': 3D Non-Rigid registration by Gradient Descent. Taylor, Chris and Colchester, Alan. Proc. of 2nd Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'99), 1999, Cambridge, UK, United Kingdom. Springer, 1679, pp.597--605, 1999, LNCS. <10.1007/10704282_64>. <inria-00615831>
  • Xavier Pennec. Probabilities and Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. Cetin, A.E. and Akarun, L. and Ertuzun, A. and Gurcan, M.N. and Yardimci, Y. Proc. of Nonlinear Signal and Image Processing (NSIP'99), 1999, June 20-23, Antalya, Turkey, Turkey. 1, pp.194--198, 1999. <inria-00615833>
  • Xavier Pennec, Charles R.G. Guttmann, Jean-Philippe Thirion. Feature-based Registration of Medical Images: Estimation and Validation of the Pose Accuracy. Proc. of First Int. Conf. on Medical Image Computing and Computer-Assisted Intervention (MICCAI'98), 1998, Cambridge, USA, United States. Springer, 1496, pp.1107--1114, 1998, LNCS. <10.1007/BFb0056300>. <inria-00615809>
  • Alexis Roche, Grégoire Malandain, Xavier Pennec, Nicholas Ayache. The Correlation Ratio as a New Similarity Measure for Multimodal Image Registration. Medical Image Computing and Computer-Assisted Interventation, 1998, France. pp.1115-1124, 1998, <10.1007/BFb0056181>. <cea-00333675>
  • Xavier Pennec. Registration of Uncertain Geometric Features: Estimating the Pose and its Accuracy. Moigne, J. Le. Proc of the First Image Registration Workshop, November 20-21 1997, Greenbelt, Maryland, USA, 1997, Greenbelt, Maryland, USA, United States. pp.263--272, 1997. <inria-00615789>
  • Xavier Pennec, Nicholas Ayache. Quelques problèmes posés par la gestion des primitives géométriques en vision par ordinateur. Journées ORASIS, 1996, no address, France. pp.111-116, 1996. <inria-00615764>
  • Xavier Pennec, Nicholas Ayache. Randomness and Geometric Features in Computer Vision. IEEE Conf. on Computer Vision and Pattern Recognition (CVPR'96), 1996, San Francisco, Cal, USA, United States. pp.484--491, 1996, <10.1109/CVPR.1996.517116>. <inria-00615694>
  • Xavier Pennec. Multiple Registration and Mean Rigid Shape - Application to the 3D case. Mardia, K.V. and Gill, C.A. and I.L., Dryden. Image Fusion and Shape Variability Techniques (16th Leeds Annual Statistical Workshop), 1996, no address, United Kingdom. pp.178-185, 1996. <inria-00615762>
  • Jay West, Michael Fitzpatrick, Matthew Wang, Benoit Dawant, Calvin Maurer, et al.. Comparison and evaluation of retrospective intermodality image registration techniques. Medical Imaging 1996: Image Processing, Apr 1996, Newport Beach, California, USA, United States. 2710, 1996, SPIE proceedings series. <10.1117/12.237936>. <inria-00615767>
  • Xavier Pennec, Jean-Philippe Thirion. Validation of 3D Registration Methods based on Points and Frames. Proc. of the 5th Int. Conf on Comp. Vision (ICCV'95), 1995, Cambridge, Ma, United States. pp.557--562, 1995, <10.1109/ICCV.1995.466890>. <inria-00615699>
  • Xavier Pennec, Nicholas Ayache. An ¸al O(n2) Algorithm for 3D Substructure Matching of Proteins. Califano, A. and Rigoutsos, I. and Wolson, H.J. Shape and Pattern Matching in Computational Biology -- Proc. First Int. Workshop, Seattle, Wash, June 20, 1994, 1994, Seattle, Wash, United States. Plenum Publishing, pp.25--40, 1994. <inria-00615736>

Poster3 documents

Brevet6 documents

  • Natasha Lepore, Fernando Ypes-Calderon, Yalin Wang, Paul Thompson, Xavier Pennec, et al.. Magnetic resonance imaging tool to detect clinical difference in brain anatomy. United States, Patent n° : WO/2015/017582, International Application PCT/US2014/048973. 2015. <hal-01203798>
  • Tom Vercauteren, Aymeric Perchant, Nicholas Ayache, Xavier Pennec, Grégoire Malandain. Robust Mosaicing Method with Correction of Motion Distorsions and Tissue Deformations for In Vivo Fibered Microscopy. United States, Patent n° : US Patent US20090041314. 2007. <hal-00875647>
  • Vincent Arsigny, Xavier Pennec, Pierre Fillard, Nicholas Ayache. Device for processing raw images or tensor images. United States, Patent n° : US patent US 2008/0170802. 2006. <hal-00875690>
  • Vincent Arsigny, Xavier Pennec, Pierre Fillard, Nicholas Ayache. Dispositif perfectionné de traitement ou de production d'images de tenseurs. France, Patent n° : International application number PCT/FR2006/000774. 2006. <hal-00875686>
  • Alexis Roche, Grégoire Malandain, Nicholas Ayache, Xavier Pennec. Electronic device for automatic registration of images. United States, Patent n° : US patent No US 6,539,127 B1, Mars 25, 2003. 2003. <hal-00875677>
  • Alexis Roche, Grégoire Malandain, Nicholas Ayache, Xavier Pennec. Dispositif électronique de recalage automatique d'images. France, Patent n° : Brevet numéro No FR 98 09649. European extension EP0977148. 1999. <hal-00875674>

Article dans une revue73 documents

  • Nina Miolane, Susan Holmes, Xavier Pennec. Template shape estimation: correcting an asymptotic bias. SIAM Journal of Imaging Sciences, 2017. <hal-01350508v2>
  • Bishesh Khanal, Nicholas Ayache, Xavier Pennec. Simulating Longitudinal Brain MRIs with known Volume Changes and Realistic Variations in Image Intensity. Frontiers in Neuroscience, Frontiers, 2017. <hal-01348959v2>
  • Jan L. Bruse, Abbas Khushnood, Kristin Mcleod, Giovanni Biglino, Maxime Sermesant, et al.. How successful is successful? Aortic arch shape after successful aortic coarctation repair correlates with left ventricular function. The Journal of Thoracic and Cardiovascular Surgery, 2016, <10.1016/j.jtcvs.2016.09.018>. <hal-01387297>
  • Jan L. Bruse, Elena Cervi, Kristin Mcleod, Giovanni Biglino, Maxime Sermesant, et al.. Looks Do Matter! Aortic Arch Shape After Hypoplastic Left Heart Syndrome Palliation Correlates With Cavopulmonary Outcomes. The Annals of Thoracic Surgery, 2016, pp.S0003-4975(16)30748-2. <10.1016/j.athoracsur.2016.06.041>. <hal-01421202>
  • Jan L. Bruse, Kristin Mcleod, Giovanni Biglino, Hopewell N. Ntsinjana, Claudio Capelli, et al.. A statistical shape modelling framework to extract 3D shape biomarkers from medical imaging data: assessing arch morphology of repaired coarctation of the aorta. BMC Medical Imaging, BioMed Central, 2016, 16 (1), <10.1186/s12880-016-0142-z>. <hal-01335147>
  • Bishesh Khanal, Marco Lorenzi, Nicholas Ayache, Xavier Pennec. A biophysical model of brain deformation to simulate and analyze longitudinal MRIs of patients with Alzheimer's disease. NeuroImage, Elsevier, 2016, 134, pp.35-52. <10.1016/j.neuroimage.2016.03.061>. <hal-01305755>
  • Mehdi Hadj-Hamou, Marco Lorenzi, Nicholas Ayache, Xavier Pennec. Longitudinal Analysis of Image Time Series with Diffeomorphic Deformations: A Computational Framework Based on Stationary Velocity Fields. Frontiers in Neuroscience, Frontiers, 2016, 10 (236), pp.18. <10.3389/fnins.2016.00236>. <hal-01329989>
  • Nina Miolane, Xavier Pennec. Computing Bi-Invariant Pseudo-Metrics on Lie Groups for Consistent Statistics. Entropy, MDPI, 2015, 17 (4), pp.1850-1881. <10.3390/e17041850>. <hal-01133922>
  • Kristin Mcleod, Maxime Sermesant, Philipp Beerbaum, Xavier Pennec. Spatio-Temporal Tensor Decomposition of a Polyaffine Motion Model for a Better Analysis of Pathological Left Ventricular Dynamics. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2015, 34 (7), pp.1562--1675. <10.1109/TMI.2015.2405579>. <hal-01205342>
  • David M. Cash, Chris Frost, Leonardo O. Iheme, Devrim Ünay, Melek Kandemir, et al.. Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. NeuroImage, Elsevier, 2015, 123, pp.149-164. <10.1016/j.neuroimage.2015.07.087>. <hal-01203573>
  • Marco Lorenzi, Nicholas Ayache, Xavier Pennec. Regional flux analysis for discovering and quantifying anatomical changes: An application to the brain morphometry in Alzheimer's disease. NeuroImage, Elsevier, 2015, 115, pp.224-234. <10.1016/j.neuroimage.2015.04.051>. <hal-01145728>
  • Marco Lorenzi, Xavier Pennec, Giovanni B. Frisoni, Nicholas Ayache. Disentangling normal aging from Alzheimer's disease in structural magnetic resonance images. Neurobiology of Aging, Elsevier, 2015, 36, pp.S42-S52. <10.1016/j.neurobiolaging.2014.07.046>. <hal-01061017>
  • Herve Lombaert, Leo Grady, Xavier Pennec, Nicholas Ayache, Farida Cheriet. Spectral Log-Demons: Diffeomorphic Image Registration with Very Large Deformations. International Journal of Computer Vision, Springer Verlag, 2014, 107 (3), pp.254-271. <10.1007/s11263-013-0681-5>. <hal-00979616>
  • Stefan Sommer, Mads Nielsen, Sune Darkner, Xavier Pennec. Higher-order momentum distributions and locally affine LDDMM registration. SIAM J. on Imaging Science (SIIMS), SIAM, 2013, 6 (1), pp.341-367. <10.1137/110859002>. <hal-00813869>
  • Stefan Sommer, François Lauze, Mads Nielsen, Xavier Pennec. Sparse Multi-Scale Diffeomorphic Registration: the Kernel Bundle Framework. Journal of Mathematical Imaging and Vision, Springer Verlag, 2013, 46 (3), pp.292-308. <10.1007/s10851-012-0409-0>. <hal-00813868>
  • Marco Lorenzi, Xavier Pennec. Efficient Parallel Transport of Deformations in Time Series of Images: from Schild's to Pole Ladder. Journal of Mathematical Imaging and Vision, Springer Verlag, 2013, 50 (1-2), pp.5-17. <10.1007/s10851-013-0470-3>. <hal-00870489>
  • Benedetta Leonardi, Andrew Taylor, Tommaso Mansi, Ingmar Voigt, Maxime Sermesant, et al.. Computational modelling of the right ventricle in repaired tetralogy of Fallot: can it provide insight into patient treatment?. European Heart Journal - Cardiovascular Imaging, Oxford UP, 2013, 14 (4), pp.381-6. <10.1093/ehjci/jes239>. <hal-00813831>
  • Marco Lorenzi, Nicholas Ayache, Giovanni Frisoni, Xavier Pennec. LCC-Demons: a robust and accurate symmetric diffeomorphic registration algorithm. NeuroImage, Elsevier, 2013, 81 (1), pp.470-483. <10.1016/j.neuroimage.2013.04.114>. <hal-00819895v2>
  • Irina Vidal-Migallón, Olivier Commowick, Xavier Pennec, Julien Dauguet, Tom Vercauteren. GPU & CPU implementation of Young - Van Vliet's Recursive Gaussian Smoothing Filter. Insight Journal (ITK), 2013, pp.16. <inserm-00855958>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, José Braga, Guido Gerig, et al.. Toward a Comprehensive Framework for the Spatiotemporal Statistical Analysis of Longitudinal Shape Data. International Journal of Computer Vision, Springer Verlag, 2013, 103 (1), pp.22-59. <10.1007/s11263-012-0592-x>. <hal-00813825>
  • Marco Lorenzi, Xavier Pennec. Geodesics, Parallel Transport & One-parameter Subgroups for Diffeomorphic Image Registration. International Journal of Computer Vision, Springer Verlag, 2013, International Journal of Computer Vision, 105 (2), pp.111-127. <10.1007/s11263-012-0598-4>. <hal-00813835>
  • Catalina Tobon-Gomez, Mathieu De Craene, Kristin Mcleod, Lennart Tautz, Wenzhe Shi, et al.. Benchmarking framework for myocardial tracking and deformation algorithms: an open access database. Medical Image Analysis, Elsevier, 2013, 17 (6), pp.632-648. <10.1016/j.media.2013.03.008>. <hal-00855928>
  • Romain Guibert, Kristin Mcleod, Alfonso Caiazzo, Tommaso Mansi, Miguel Angel Fernández, et al.. Group-wise Construction of Reduced Models for Understanding and Characterization of Pulmonary Blood Flows from Medical Images. Medical Image Analysis, Elsevier, 2013, 18 (1), pp.63-82. <10.1016/j.media.2013.09.003>. <hal-00874545>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache, José Braga. Comparison of the endocranial ontogenies between chimpanzees and bonobos via temporal regression and spatiotemporal registration.. Journal of Human Evolution, Elsevier, 2012, 62 (1), pp.74-88. <10.1016/j.jhevol.2011.10.004>. <hal-00816048>
  • Christof Seiler, Xavier Pennec, Mauricio Reyes. Capturing the Multiscale Anatomical Shape Variability with Polyaffine Transformation Trees. Medical Image Analysis, Elsevier, 2012, 16 (7), pp.1371-1384. <10.1016/j.media.2012.05.011>. <hal-00813866>
  • Nicholas Ayache, Olivier Clatz, Hervé Delingette, Grégoire Malandain, Xavier Pennec, et al.. Vers un patient numérique personnalisé pour le diagnostic et la thérapie guidés par l'image [Towards a personalized digital patient for diagnosis and therapy guided by image].. médecine/sciences, EDP Sciences, 2011, 27 (2), pp.208-13. <10.1051/medsci/2011272208>. <inria-00616192>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Yi-Yu Chou, Agatha Lee, et al.. A nonconservative Lagrangian framework for statistical fluid registration-SAFIRA.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2011, 30 (2), pp.184-202. <10.1109/TMI.2010.2067451>. <inria-00616099>
  • Tommaso Mansi, Ingmar Voigt, Benedetta Leonardi, Xavier Pennec, Stanley Durrleman, et al.. A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2011, 30 (9), pp.1605 - 1616. <10.1109/TMI.2011.2135375>. <inria-00616185>
  • Stanley Durrleman, Pierre Fillard, Xavier Pennec, Alain Trouvé, Nicholas Ayache. Registration, atlas estimation and variability analysis of white matter fiber bundles modeled as currents.. NeuroImage, Elsevier, 2011, 55 (3), pp.1073-90. <10.1016/j.neuroimage.2010.11.056>. <hal-00816044>
  • Tommaso Mansi, Xavier Pennec, Maxime Sermesant, Hervé Delingette, Nicholas Ayache. iLogDemons: A Demons-Based Registration Algorithm for Tracking Incompressible Elastic Biological Tissues. International Journal of Computer Vision, Springer Verlag, 2011, 92 (1), pp.92-111. <10.1007/s11263-010-0405-z>. <inria-00616187>
  • Vincent Arsigny, Olivier Commowick, Nicholas Ayache, Xavier Pennec. A Fast and Log-Euclidean Polyaffine Framework for Locally Linear Registration. Journal of Mathematical Imaging and Vision, Springer Verlag, 2009, 33 (2), pp.222-238. <10.1007/s10851-008-0135-9>. <inria-00616084>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Nicholas Ayache. Statistical models of sets of curves and surfaces based on currents.. Med Image Anal, Elsevier, 2009, 13 (5), pp.793-808. <10.1016/j.media.2009.07.007>. <hal-00816051>
  • Heike Hufnagel, Jan Ehrhardt, Xavier Pennec, Nicholas Ayache, Heinz Handels. Computation of a probabilistic statistical shape model in a maximum-a-posteriori framework.. IMIA Yearbook of Medical Informatics, Schattauer, 2009, 48 (4), pp.314-9. <10.3414/ME9228>. <inria-00616088>
  • B T Thomas Yeo, Tom Vercauteren, Pierre Fillard, Jean-Marc Peyrat, Xavier Pennec, et al.. DT-REFinD: diffusion tensor registration with exact finite-strain differential.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2009, 28 (12), pp.1914-28. <10.1109/TMI.2009.2025654>. <inria-00502720>
  • Caroline Brun, Natasha Leporé, Xavier Pennec, Agatha Lee, Marina Barysheva, et al.. Mapping the regional influence of genetics on brain structure variability--a tensor-based morphometry study.. NeuroImage, Elsevier, 2009, 48 (1), pp.37-49. <10.1016/j.neuroimage.2009.05.022>. <inria-00616089>
  • Tom Vercauteren, Xavier Pennec, Aymeric Perchant, Nicholas Ayache. Diffeomorphic demons: Efficient non-parametric image registration.. NeuroImage, Elsevier, 2009, 45 (1), Supplement 1, Pages S61-S72. <10.1016/j.neuroimage.2008.10.040>. <inserm-00349600>
  • Stéphane Nicolau, Xavier Pennec, Luc Soler, X. Buy, A. Gangi, et al.. An augmented reality system for liver thermal ablation: design and evaluation on clinical cases.. Medical Image Analysis, Elsevier, 2009, 13 (3), pp.494-506. <10.1016/j.media.2009.02.003>. <inria-00616105>
  • Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, Nicholas Ayache. Principal Deformations Modes of Articulated Models for the Analysis of 3D Spine Deformities. Electronic Letters on Computer Vision and Image Analysis, ELCVIA, 2008, 7 (4), pp.13--31. <10.5565/rev/elcvia.165>. <inria-00616067>
  • Heike Hufnagel, Xavier Pennec, Jan Ehrhardt, Nicholas Ayache, Heinz Handels. Generation of a Statistical Shape Model with Probabilistic Point Correspondences and EM-ICP. International Journal for Computer Assisted Radiology and Surgery (IJCARS), undefined or unknown publisher, 2008, 2 (5), pp.265--273. <10.1007/s11548-007-0138-9>. <inria-00616073>
  • Stanley Durrleman, Xavier Pennec, Alain Trouvé, Paul Thompson, Nicholas Ayache. Inferring brain variability from diffeomorphic deformations of currents: an integrative approach.. Med Image Anal, Elsevier, 2008, 12 (5), pp.626-37. <10.1016/j.media.2008.06.010>. <hal-00816052>
  • Johan Montagnat, Tristan Glatard, Isabel Campos Plasencia, Francisco Castejon, Xavier Pennec, et al.. Workflow-based data parallel applications on the EGEE production grid infrastructure. Journal of Grid Computing, Springer Verlag, 2008, 6 (8), pp.369-383. <10.1007/s10723-008-9108-x>. <hal-00683983>
  • Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, Nicholas Ayache. Geometric Variability of the Scoliotic Spine using Statistics on Articulated Shape Models. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2008, 27 (4), pp.557--568. <10.1109/TMI.2007.911474>. <inria-00616070>
  • Tristan Glatard, Johan Montagnat, Diane Lingrand, Xavier Pennec. Flexible and efficient workflow deployement of data-intensive applications on grids with MOTEUR. International Journal of High Performance Computing Applications, SAGE Publications, 2008, 22 (3), pp.347-360. <10.1177/1094342008096067>. <hal-00459130>
  • Jonathan Boisvert, Farida Cheriet, Xavier Pennec, Hubert Labelle, Nicholas Ayache. Articulated Spine Models for 3D Reconstruction from Partial Radiographic Data. IEEE Transactions on Biomedical Engineering, Institute of Electrical and Electronics Engineers, 2008, 55 (11), pp.2565--2574. <10.1109/TBME.2008.2001125>. <inria-00616069>
  • Pierre Fillard, Xavier Pennec, Vincent Arsigny, Nicholas Ayache. Clinical DT-MRI estimation, smoothing, and fiber tracking with log-Euclidean metrics.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2007, 26 (11), pp.1472-82. <10.1109/TMI.2007.899173>. <inria-00502645>
  • Jean-Marc Peyrat, Maxime Sermesant, Xavier Pennec, Hervé Delingette, Chenyang Xu, et al.. A Computational Framework for the Statistical Analysis of Cardiac Diffusion Tensors: Application to a Small Database of Canine Hearts. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2007, 26 (11), pp.1500-1514. <10.1109/TMI.2007.907286>. <inria-00616023>
  • Pierre Fillard, Vincent Arsigny, Xavier Pennec, Kiralee M Hayashi, Paul M Thompson, et al.. Measuring brain variability by extrapolating sparse tensor fields measured on sulcal lines.. NeuroImage, Elsevier, 2007, 34 (2), pp.639-50. <10.1016/j.neuroimage.2006.09.027>. <inria-00502521>
  • Vincent Arsigny, Pierre Fillard, Xavier Pennec, Nicholas Ayache. Geometric Means in a Novel Vector Space Structure on Symmetric Positive-Definite Matrices. SIAM Journal on Matrix Analysis and Applications, Society for Industrial and Applied Mathematics, 2007, 29 (1), pp.328--347. <10.1137/050637996>. <inria-00616031>
  • Xavier Pennec. Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements. Journal of Mathematical Imaging and Vision, Springer Verlag, 2006, 25 (1), pp.127-154. <10.1007/s10851-006-6228-4>. <inria-00614994>
  • Vincent Arsigny, Pierre Fillard, Xavier Pennec, Nicholas Ayache. Log-Euclidean metrics for fast and simple calculus on diffusion tensors.. Magnetic Resonance in Medicine, Wiley, 2006, 56 (2), pp.411-21. <10.1002/mrm.20965>. <inria-00502678>
  • Hervé Delingette, Xavier Pennec, Luc Soler, Jacques Marescaux, Nicholas Ayache. Computational Models for Image Guided, Robot-Assisted and Simulated Medical Interventions. Proceedings of the IEEE, Institute of Electrical and Electronics Engineers, 2006, 94 (9), pp.1678- 1688. <10.1109/JPROC.2006.880718>. <inria-00615001>
  • Xavier Pennec, Pierre Fillard, Nicholas Ayache. A Riemannian Framework for Tensor Computing. International Journal of Computer Vision, Springer Verlag, 2006, 66 (1), pp.41--66. <10.1007/s11263-005-3222-z>. <inria-00614990>
  • Tom Vercauteren, Aymeric Perchant, Grégoire Malandain, Xavier Pennec, Nicholas Ayache. Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy: Robust Mosaicing with Correction of Motion Distortions and Tissue Deformation for In Vivo Fibered Microscopy. Medical Image Analysis, Elsevier, 2006, 10 (5), pp.673--692. <10.1016/j.media.2006.06.006>. <inria-00163961>
  • Stéphane Nicolau, Alain Garcia, Xavier Pennec, Luc Soler, Nicholas Ayache. An augmented reality system to guide radio-frequency tumor ablation. Computer Animation and Virtual Worlds, Wiley, 2005, 16 (1), pp.1--10. <10.1002/cav.52>. <inria-00615660>
  • Cécile Germain-Renaud, Vincent Breton, Patrick Clarysse, Yann Gaudeau, Tristan Glatard, et al.. Grid-enabling medical image analysis. International Journal of Clinical Monitoring and Computing, Springer Verlag, 2005, 19 (4-5), pp.339-349. <10.1007/s10877-005-0679-9>. <inria-00174284>
  • Xavier Pennec. Recaler pour mieux soigner. Pour la science, Paris : E. Belin, 2005, pp.126--131. <inria-00615670>
  • Vincent Arsigny, Xavier Pennec, Nicholas Ayache. Polyrigid and Polyaffine Transformations: a Novel Geometrical Tool to Deal with Non-Rigid Deformations - Application to the registration of histological slices. Medical Image Analysis, Elsevier, 2005, 9 (6), pp.507-523. <10.1016/j.media.2005.04.001>. <inria-00615665>
  • Luc Soler, Nicholas Ayache, Stéphane Nicolau, Xavier Pennec, Clément Forest, et al.. Traitement d'images médicales pour la planification, la simulation et l'aide intra-opératoire des actes chirurgicaux. La Revue de l'Electricité et de l'Electronique, Société de l'Électricité, de l'Électronique et des Technologies de l'Information et de la Communication, 2004, pp.64--71. <inria-00615647>
  • Radu Stefanescu, Xavier Pennec, Nicholas Ayache. Grid-Enabled Non-Rigid Registration of Medical Images. Parallel Processing Letters, World Scientific Publishing, 2004, 14 (2), pp.197--216. <10.1142/S0129626404001830>. <inria-00615653>
  • Miguel Ángel González Ballester, Xavier Pennec, Marius George Linguraru, Nicholas Ayache. Generalized Image Models and Their Application as Statistical Models of Images. Medical Image Analysis, Elsevier, 2004, 8 (3), pp.361--369. <10.1016/j.media.2004.06.012>. <inria-00615648>
  • Radu Stefanescu, Xavier Pennec, Nicholas Ayache. Grid Powered Nonlinear Image Registration with Locally Adaptive Regularization. Medical Image Analysis, Elsevier, 2004, 8 (3), pp.325--342. <10.1016/j.media.2004.06.010>. <inria-00615649>
  • Pascal Cachier, Eric Bardinet, Didier Dormont, Xavier Pennec, Nicholas Ayache. Iconic Feature Based Nonrigid Registration: The PASHA Algorithm. Comp. Vision and Image Understanding, undefined or unknown publisher, 2003, 89 (2-3), pp.272--298. <10.1016/S1077-3142(03)00002-X>. <inria-00615633>
  • Xavier Pennec, Pascal Cachier, Nicholas Ayache. Tracking Brain Deformations in Time-Sequences of 3D US Images. Pattern Recognition Letters, Elsevier, 2003, 24 (4-5), pp.801--813. <10.1016/S0167-8655(02)00183-6>. <inria-00615022>
  • Maxime Sermesant, Clément Forest, Xavier Pennec, Hervé Delingette, Nicholas Ayache. Deformable biomechanical models: Application to 4D cardiac image analysis. Medical Image Analysis, Elsevier, 2003, 7 (4), pp.475--488. <10.1016/S1361-8415(03)00068-9>. <inria-00615637>
  • Pierre Jannin, J Michael Fitzpatrick, David Hawkes, Xavier Pennec, Ramin Shahidi, et al.. Validation of medical image processing in image-guided therapy.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2002, 21 (12), pp.1445-9. <10.1109/TMI.2002.806568>. <inserm-00331766>
  • Alexis Roche, Xavier Pennec, Grégoire Malandain, Nicholas Ayache. Rigid registration of 3-D ultrasound with MR images: a new approach combining intensity and gradient information.. IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2001, 20 (10), pp.1038-49. <10.1109/42.959301>. <cea-00333699>
  • Sébastien Ourselin, Alexis Roche, Gérard Subsol, Xavier Pennec, Nicholas Ayache. Reconstructing a 3D structure from serial histological sections. Image and Vision Computing, Elsevier, 2001, 19, pp.25-31. <10.1016/S0262-8856(00)00052-4>. <cea-00333669>
  • Xavier Pennec, Nicholas Ayache. Uniform distribution, distance and expectation problems for geometric features processing. Journal of Mathematical Imaging and Vision, Springer Verlag, 1998, 9 (1), pp.49--67. <10.1023/A:1008270110193>. <inria-00615085>
  • Xavier Pennec, Nicholas Ayache. A geometric algorithm to find small but highly similar 3D substructures in proteins. Bioinformatics -Oxford-, undefined or unknown publisher, 1998, 14 (6), pp.516--522. <10.1093/bioinformatics/14.6.516>. <inria-00615080>
  • Xavier Pennec. Toward a generic framework for recognition based on uncertain geometric features. Videre: Journal of Computer Vision Research, Massachusetts Institute of Technology Press (MIT Press), 1998, 1 (2), pp.58--87. <inria-00615090>
  • André Guéziec, Xavier Pennec, Nicholas Ayache. Medical Image Registration using Geometric Hashing. IEEE Computational Science and Engineering, Institute of Electrical and Electronics Engineers (IEEE), 1997, 4 (4), pp.29-41. <10.1109/99.641607>. <inria-00615068>
  • Xavier Pennec, Jean-Philippe Thirion. A Framework for Uncertainty and Validation of 3D Registration Methods based on Points and Frames. International Journal of Computer Vision, Springer Verlag, 1997, 25 (3), pp.203-229. <10.1023/A:1007976002485>. <inria-00615070>
  • J. West, J.M. Fitzpatrick, M.Y. Wang, B.M. Dawant, C.R. Maurer, et al.. Comparison and evaluation of retrospective intermodality brain image registration techniques.. Journal of Computer Assisted Tomography, Lippincott, Williams & Wilkins, 1977, 21 (4), pp.554-66. <inria-00615072>

Mémoire d'étudiant1 document

  • Xavier Pennec. Traitement de l'erreur dans les méthodes de hachage géométrique et d'Alignement, une étude théorique. Imagerie médicale. 1993. <hal-00875950>

Thèse1 document

  • Xavier Pennec. L'incertitude dans les problèmes de reconnaissance et de recalage -- Applications en imagerie médicale et biologie moléculaire. Informatique [cs]. Ecole Polytechnique X, 1996. Français. <tel-00633175>

HDR1 document

  • Xavier Pennec. Statistical Computing on Manifolds for Computational Anatomy. Computer Science [cs]. Université Nice Sophia Antipolis, 2006. <tel-00633163>

Pré-publication, Document de travail3 documents

  • Loïc Devilliers, Stéphanie Allassonnière, Alain Trouvé, Xavier Pennec. Template estimation in computational anatomy: Fréchet means in top and quotient spaces are not consistent. 2016. <hal-01352707v3>
  • Xavier Pennec. Barycentric Subspace Analysis on Manifolds. 2016. <hal-01343881>
  • Tristan Glatard, Johan Montagnat, Xavier Pennec. A probabilistic model to analyse workflow performance on production grids. 2010. <hal-00481713>