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83

Molecular epidemiologist of animal and zoonotic pathogens


I am working on the use of high-troughput sequencing to get a better understanding on how to manage microbes that have an impact on agrnomy, through previous work on rhizobia, animal and public health, using as biological models animal and zoonotic pathogens.

I am mostly interested in :

-the impact of horizontal gene flows on the diversity of bacterial genomes

-the detection of loci associated with phenotypes of interest

-the analysis of pathogen transmission based on genetic diversity


Journal articles27 documents

  • Pauline Ezanno, Sébastien Picault, Gaël Beaunée, Xavier Bailly, Facundo Muñoz, et al.. Research perspectives on animal health in the era of artificial intelligence. Veterinary Research, BioMed Central, 2021, 52 (1), pp.40. ⟨10.1186/s13567-021-00902-4⟩. ⟨hal-03161705⟩
  • Massimo Giangaspero, Falko Steinbach, Rebecca Strong, Nicola Decaro, Canio Buonavoglia, et al.. Characterization of internal ribosome entry sites according to secondary structure analysis to classify border disease virus strains. Journal of Virological Methods, Elsevier, 2020, 275, pp.113704. ⟨10.1016/j.jviromet.2019.113704⟩. ⟨hal-02937517⟩
  • Florian Binetruy, Xavier Bailly, Christine Chevillon, Oliver Martin, Marco Bernasconi, et al.. Phylogenetics of the Spiroplasma ixodetis endosymbiont reveals past transfers between ticks and other arthropods. Ticks and Tick-borne Diseases, Elsevier, 2019, 10 (3), pp.575-584. ⟨10.1016/j.ttbdis.2019.02.001⟩. ⟨hal-02151790⟩
  • Arnaud Cougoul, Xavier Bailly, Gwenaël Vourc'H, Patrick Gasqui. Rarity of microbial species: In search of reliable associations. PLoS ONE, Public Library of Science, 2019, 14 (3), pp.e0200458. ⟨10.1371/journal.pone.0200458⟩. ⟨hal-02622688⟩
  • Valentin Ageorges, Marion Schiavone, Grégory Jubelin, Nelly Caccia, Philippe Ruiz, et al.. Differential homotypic and heterotypic interactions of antigen 43 (Ag43) variants in autotransporter-mediated bacterial autoaggregation. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.11100. ⟨10.1038/s41598-019-47608-4⟩. ⟨hal-02335796⟩
  • Maricarmen Rojas-Lopez, Mohamed Zorgani, Lawrence Kelley, Xavier Bailly, Andrey Kajava, et al.. Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger. Frontiers in Microbiology, Frontiers Media, 2018, 8, ⟨10.3389/fmicb.2017.02607⟩. ⟨hal-01968806⟩
  • Geoffrey Ras, Xavier Bailly, Jean-Paul Chacornac, Véronique Zuliani, Patrick Derkx, et al.. Contribution of nitric oxide synthase from coagulase-negative staphylococci to the development of red myoglobin derivatives. International Journal of Food Microbiology, Elsevier, 2018, 266, pp.310-316. ⟨10.1016/j.ijfoodmicro.2017.11.005⟩. ⟨hal-02621244⟩
  • Amélie Chastagner, Angélique Pion, Helene Verheyden, Bruno Lourtet, Bruno Cargnelutti, et al.. Host specificity, pathogen exposure, and superinfections impact the distribution of Anaplasma phagocytophilum genotypes in ticks, roe deer, and livestock in a fragmented agricultural landscape. Infection, Genetics and Evolution, Elsevier, 2017, 55, In Press, Accepted Manuscript. ⟨10.1016/j.meegid.2017.08.010⟩. ⟨hal-01605600⟩
  • Xavier Bailly. Hidden Markov phylogenetic models offer an interesting perspective to identify “high risk lineages” of environmental pathogens. Infection, Genetics and Evolution, Elsevier, 2017, 55, pp.45-47. ⟨10.1016/j.meegid.2017.08.007⟩. ⟨hal-01605601⟩
  • Aurélien Joulié, Karim Sidi-Boumedine, Xavier Bailly, Patrick Gasqui, Séverine Barry, et al.. Molecular epidemiology of Coxiella burnetii in French livestock reveals the existence of three main genotype clusters and suggests species-specific associations as well as regional stability. Infection, Genetics and Evolution, Elsevier, 2017, 48, pp.142-149. ⟨10.1016/j.meegid.2016.12.015⟩. ⟨hal-01608895⟩
  • Parviez R. Hosseini, James N. Mills, Anne-Hélène Prieur-Richard, Vanessa O. Ezenwa, Xavier Bailly, et al.. Does the impact of biodiversity differ between emerging and endemic pathogens? The need to separate the concepts of hazard and risk. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2017, 372 (1722), pp.20160129. ⟨10.1098/rstb.2016.0129⟩. ⟨hal-01608344⟩
  • Maude Jacquot, David Abrial, Patrick Gasqui, Severine Bord, Maude Marsot, et al.. Multiple independent transmission cycles of a tick-borne pathogen within a local host community. Scientific Reports, Nature Publishing Group, 2016, 6, pp.31273. ⟨10.1038/srep31273⟩. ⟨hal-01365425⟩
  • Gwenaël Vourc'H, David Abrial, Séverine Bord, Maude Jacquot, Sébastien Masseglia, et al.. Mapping human risk of infection with Borrelia burgdorferi sensu lato, the agent of Lyme borreliosis, in a periurban forest in France. Ticks and Tick-borne Diseases, Elsevier, 2016, 7, pp.644-652. ⟨10.1016/j.ttbdis.2016.02.008⟩. ⟨hal-02641473⟩
  • Aurelien Joulie, K. Laroucau, Xavier Bailly, M. Prigent, Patrick Gasqui, et al.. Circulation of Coxiella burnetii in a naturally infected flock of dairy sheep: shedding dynamics, environmental contamination, and genotype diversity. Applied and Environmental Microbiology, American Society for Microbiology, 2015, 81 (20), pp.7253-7260. ⟨10.1128/AEM.02180-15⟩. ⟨hal-02635908⟩
  • Vanessa O. Ezenwa, Anne-Hélène Prieur-Richard, Benjamin Roche, Xavier Bailly, Pierre Becquart, et al.. Interdisciplinarity and Infectious Diseases: An Ebola Case Study. PLoS Pathogens, Public Library of Science, 2015, 11 (8), pp.e1004992. ⟨10.1371/journal.ppat.1004992⟩. ⟨hal-01223813⟩
  • Gerardo Suzán, Gabriel García-Peña, Ivan Castro-Arellano, Oscar Rico, André Rubio, et al.. Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space. Ecology and Evolution, Wiley Open Access, 2015, 5 (4), pp.865-873. ⟨10.1002/ece3.1404⟩. ⟨hal-02391093⟩
  • Nitin Kumar, Ganesh Lad, Elisa Giuntini, Maria E Kaye, Piyachat Udomwong, et al.. Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum. Open Biology, Royal Society, 2015, 5 (1), pp.14. ⟨10.1098/rsob.140133⟩. ⟨hal-02638057⟩
  • Jocelyn de Goër de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu Nguifo. A perceptual hash function to store and retrieve large scale DNA sequences. CoRR, 2014, abs/1412.5517. ⟨hal-02082967⟩
  • Maude Jacquot, Maxime Bisseux, David Abrial, Maud Marsot, Elisabeth Ferquel, et al.. High-throughput sequence typing reveals genetic differentiation and host specialization among populations of the Borrelia burgdorferi species complex that infect rodents. PLoS ONE, Public Library of Science, 2014, 9 (2), pp.e88581. ⟨10.1371/journal.pone.0088581⟩. ⟨hal-02635920⟩
  • Thibaud Dugat, Amélie Chastagner, Anne-Claire Lagrée, Benoit Durand, Simon Thierry, et al.. A new multiple-locus variable-number tandem repeat analysis reveals different clusters for Anaplasma phagocytophilum circulating in domestic and wild ruminants. Parasites and Vectors, BioMed Central, 2014, 7, pp.439. ⟨10.1186/1756-3305-7-439⟩. ⟨hal-02631660⟩
  • Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc'H, Hélène Verheyden, Loïc Legrand, et al.. Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle. Veterinary Research, BioMed Central, 2014, 45 (1), pp.114. ⟨10.1186/s13567-014-0114-7⟩. ⟨hal-01290617⟩
  • Maude Jacquot, Mathieu Gonnet, Elisabeth Ferquel, David Abrial, Alexandre Claude, et al.. Comparative population genomics of the Borrelia burgdorferi species complex reveals high degree of genetic isolation among species and underscores benefits and constraints to studying intra-specific epidemiological processes.. PLoS ONE, Public Library of Science, 2014, 9 (4), pp.e94384. ⟨10.1371/journal.pone.0094384⟩. ⟨pasteur-01054563⟩
  • Amélie Chastagner, Xavier Bailly, Agnès Leblond, Sophie Pradier, Gwenaël Vourc'H. Single genotype of Anaplasma phagocytophilum identified from ticks, Camargue, France.. Emerging Infectious Diseases, Centers for Disease Control and Prevention, 2013, 19 (5), pp.825-7. ⟨10.3201/eid1905.121003⟩. ⟨hal-00972552⟩
  • Agnès Leblond, Amélie Chastagner, Sophie Pradier, Xavier Bailly, Sébastien Masseglia, et al.. La prévalence de l’anaplamose dans le sud de la France. Bulletin épidémiologique, ANSES, 2012, pp.30-31. ⟨hal-02647400⟩
  • Xavier Bailly, Elisa Giuntini, Connor M Sexton, Ryan Pj Lower, Peter W Harrison, et al.. Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolates. ISME Journal, Nature Publishing Group, 2011, 5 (11), pp.1722-1734. ⟨10.1038/ismej.2011.55⟩. ⟨hal-02652397⟩
  • Xavier Bailly, Isabelle Olivieri, Brigitte Brunel, Jean-Claude Cleyet-Marel, Gilles Bena. Horizontal Gene Transfer and Homologous Recombination Drive the Evolution of the Nitrogen-Fixing Symbionts of Medicago Species. Journal of Bacteriology, American Society for Microbiology, 2007, 189 (14), pp.5223-5236. ⟨10.1128/JB.00105-07⟩. ⟨halsde-00322137⟩
  • Xavier Bailly, Isabelle Olivieri, Stéphane de Mita, Jean-Claude Cleyet-Marel, Gilles Béna. Recombination and selection shape the molecular diversity pattern of nitrogen-fixing Sinorhizobium sp associated to Medicago. Molecular Ecology, Wiley, 2006, 15 (10), pp.2719-2734. ⟨10.1111/j.1365-294X.2006.02969.x⟩. ⟨halsde-00261482⟩

Conference papers29 documents

  • Florian Berland, Philippe Sarazin, Matthieu Bastien, Combes Benoit, Thierry Boulinier, et al.. Implication du chevreuil dans le risque acarologique. Journées Tiques et Maladies à Tiques, Mar 2022, Nancy, France. ⟨hal-03634383⟩
  • Marc Tabouret, Michaël Treilles, Raphaël Lamothe, Karine Sommier, Racquel Ceniceros, et al.. Fièvre Q : état d'avancement du projet EXPAIRCOX sur les risques de transmission et la perception de ces risques. Comité Technique du Cluster REXCAP «Etat des lieux et enjeux sanitaires en filière caprine en Grand Ouest », Mar 2021, A distance, France. ⟨hal-03164663⟩
  • Suzanne Bastian, Albert Agoulon, Xavier Bailly, Alain Butet, Amélie Chastagner, et al.. Why such a contrast between the low prevalence of zoonotic pathogens in questing ticks and the high prevalence in their vertebrate reservoir hosts?. Pathobiome 2018, Mar 2018, Ajaccio, France. 55 p. ⟨hal-02737137⟩
  • Arnaud Cougoul, Patrick Gasqui, Gwenaël Vourc'H, Xavier Bailly. Limits of statistical detection of microbial associations from metagenomic data. Pathobiome 2018, Mar 2018, Ajaccio, France. ⟨hal-02737034⟩
  • Amélie Chastagner, Angélique Pion, Hélène Verheyden, Bruno Lourtet, Bruno Cargnelutti, et al.. Influence de la spécificité d’hôte, de l’expositon et des modalités de sur-infection sur la distribution des génotypes d’Anaplasma phagocytophilum dans les tiques et les chevreuils d’un paysage fragmenté. Réunion du groupe « Tiques et Maladies à Tiques » (TMT), Mar 2018, Laschamps - Saint Genes Champanelle, France. ⟨hal-02737908⟩
  • Arnaud Cougoul, Xavier Bailly, Gwenaël Vourc'H, Patrick Gasqui. Limits of statistical detection of microbial associations from 29 metagenomic data. Pathobiome 2018 "Pathogens in Microbiotas in Hosts", Mar 2018, Ajaccio, France. ⟨hal-02737255⟩
  • Olivier Plantard, Albert Agoulon, Suzanne Bastian, Thierry Hoch, Elsa Quillery, et al.. Taking into account the spatial heterogeneity of agricultural landscapes to explain densities and movements of Ixodes ricinus and prevalence of its associated pathogens. 9. Tick and Tick-borne Pathogen Conference & 1st Asia Pacific Rickettsia Conference, Aug 2017, Cairns, Australia. 140 p. ⟨hal-02737044⟩
  • Jocelyn de Goër, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. PSH-DB, un système clé-valeur permettant l'indexation et la recherche de séquences ADN. BDAA 2017, 33ème conférence sur la Gestion de Données — Principes, Technologies et Applications,, Nov 2017, Nancy, France. ⟨hal-02089127⟩
  • Jean-Francois J.-F. Cosson, Maxime Galan, Xavier Bailly, Sara Moutailler, Adrien Blisnick, et al.. 16S rRNA amplicon sequencing for the surveillance of bacterial zoonoses in ticks and rodents, with potential interest for the discovery of new epidemiological cycles affecting animals and/or humans. 6. Journées d’étude du pôle Santé et Société : Agents infectieux et vaccins chez l’homme et l’animal, Mar 2016, Ecole Nationale Vétérinaire d’Alfort, Maisons-Alfort, France. ⟨hal-02742768⟩
  • Aurélien Joulié, K. Sidi-Boumedine, Xavier Bailly, Patrick Gasqui, Séverine Barry, et al.. Coxiella burnetii circulation in a naturally infected flock of dairy sheep: shedding dynamics, environmental contamination, and genotype diversity. MedVetNet sponsored Symposium: current findings in Q fever, Apr 2016, Brussels, Belgium. pp.16 slides. ⟨hal-02743290⟩
  • Amelie Chastagner, Thibaud Dugat, Gwenaël Vourc'H, Hélène Verheyden, Loïc Legrand, et al.. Plusieurs cycles de l'agent de l'anaplasmose granucolcytaire (Anaplasma phagocytophilum) coexistent : apport des données de séquençage. Journées d'animation scientifique du département Santé Animale Edition 2016, May 2016, Poitiers, France. ⟨hal-02800790⟩
  • Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc'H, Hélène Verheyden, Loïc Legrand, et al.. Plusieurs groupes génétiques d’Anaplasma phagocytophilum sont à l’origine de l’anaplasmose granulocytaire chez les animaux domestiques. 23. Rencontres autour des Recherches sur les Ruminants, Dec 2016, Paris, France. 376 p. ⟨hal-02743559⟩
  • Olivier Plantard, David Abrial, Albert Agoulon, Xavier Bailly, Suzanne Bastian, et al.. Le projet Oscar : prendre en compte l'hétérogénéité spatiale du paysage pour comprendre les déterminants de la distribution du risque lié aux maladies à tiques. 13. Journées d'Animation Scientifique du Département de Santé Animale (JAS), May 2016, Poitiers, France. ⟨hal-02800337⟩
  • Jean-François Cosson, Maxime Galan, Xavier Bailly, Nathalie Charbonnel, Maria Razzauti, et al.. Metagenomics reveals shared bacterial communities in ticks and rodents with potential interest for new epidemiological cycles affecting animals and/or humans. 2. Conference on Neglected Vectors and Vector-Borne Diseases (EurNegVec): with MC and WG Meeting of the COST Action TD1303, Mar 2015, Izmir, Turkey. ⟨hal-02740308⟩
  • Amélie Chastagner, Gwenaël Vourc'H, T. Dugat, Hélène Verheyden, Laurent Legrand, et al.. Les caractéristiques d'un paysage agricole influencent-elles la relation rongeur-tique ?. Réunion annuel du groupe "Tiques et Maladies à Tiques" (TMT) du Réseau Ecologie des Interactions Durables (REID), Mar 2015, Montferrier sur Lez, France. ⟨hal-02417303⟩
  • Aurélien Joulié, K. Laroucau, Xavier Bailly, M. Prigent, E. Rousset, et al.. Circulation de Coxiella burnetii dans un troupeau ovin lait naturellement infecté dynamiques d'excrétion, contamination environnementale et diversité génotypique. 22. Rencontres autour des Recherches sur les Ruminants, Dec 2015, Paris, France. pp.143-146. ⟨hal-02741957⟩
  • Olivier Plantard, Albert Agoulon, Suzanne Bastian, Laurence Malandrin, Thierry Hoch, et al.. A mapping tool to evaluate the impact of global change on tick-borne disease risk in European agricultural landscapes. 3e Conférence « Global Climate Smart Agriculture », Mar 2015, Montpellier, France. ⟨hal-01169433⟩
  • Amélie Chastagner, Thibaud Dugat, Xavier Bailly, Gwenaël Vourc'H, Renaud Maillard, et al.. Diversité génétique d’Anaplama phagocytophilum, agent de l’anaplasmose granulocytaire, - Conséquences épidémiologiques et implications pour le contrôle en France -. Académie Vétérinaire de France, Jan 2015, Paris, France. pp.35 slides. ⟨hal-02795572⟩
  • Gwenaël Vourc'H, Maud Marsot, Maude Jacquot, Benoit Pisanu, Patrick Gasqui, et al.. L’introduction de l’écureuil de Corée (Tamias sibiricus) en Ile-de-France : rôle dans le risque de transmission de la borreliose de Lyme en Forêt de Sénart. Colloque de lancement du GdR ‘INVASIONS BIOLOGIQUES’, Oct 2014, Rennes, France. pp.23 slides. ⟨hal-02793685⟩
  • Jocelyn de Goer de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. Indexation d'une grande quantité de séquences ADN dans une base de données NOSQL à l'aide d'algorithmes de hachage perceptuel. Journées d'animation scientifique du Département de Santé Animale, Oct 2013, Cap d'Agde, France. ⟨hal-02745443⟩
  • Maude Jacquot, Maxime Bisseux, David Abrial, Maud Marsot, Sébastien Masseglia, et al.. Différenciation génétique et circulation des bactéries du complexe d'espèces Borrelia burgdorferi. Journées d'Animation Scientifique du département de Santé Animale, Oct 2013, Cap d'Agde (France), 15-18/10/2013, France. pp.29 slides. ⟨hal-02806575⟩
  • Xavier Bailly. Evolution of the tick-borne pathogen Borrelia burgdorferi. NIH-RAPIDD workshops: Slow evolving pathogens, Sep 2013, Glasgow, United Kingdom. pp.18 slides. ⟨hal-02802409⟩
  • Jocelyn de Goer de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. Indexation de séquences d'ADN dans une base de données NoSQL à l'aide d'algorithmes de hachage perceptuel. 12. Workshop SeqBio 2013, Nov 2013, Montpellier, France. ⟨hal-02748418⟩
  • Maude Jacquot, Maxime Bisseux, Maud Marsot, Sébastien Masseglia, E. Ferquel, et al.. Différenciation génétique entre les bactéries du complexe d'espèce Borrelia burgdorferi infectant trois espèces de petits mammifères en forêt péri-urbaine. Journées d'Animation Scientifique du département de Santé Animale, Oct 2013, Cap d'Agde, France. ⟨hal-02806537⟩
  • Maude Pithon, Maxime Bisseux, Maud Marsot, Sébastien Masseglia, Jean - Louis Chapuis, et al.. Étude de la différenciation entre les populations du complexe d'espèce Borrelia burgdorferi infectant trois espèces de petits mammifères en forêt de Sénart. Réunion Tiques & Maladies à Tiques, Nov 2012, Laschamps - Saint Genès Champanelle, France. 1 p. ⟨hal-02809787⟩
  • Agnès Leblond, Amelie Chastagner, Sophie Pradier, Xavier Bailly, Sébastien Masseglia, et al.. Ecoepidemiology of Anaplasma phagocytophylum in horses in France. 12. Congrès de la WEVA (World Equine Veterinary Association), Nov 2011, Hyderabad, India. 2 p. ⟨hal-02803818⟩
  • Sébastien Guizard, Matthieu Matthieu.Reichstadt@inrae.Fr Reichstadt, Xavier Bailly. Identification de gènes diagnostic chez les Rhizobium leguminosarum à l'aide de la grille informatique sous l'environnement WISDOM. Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France. 5 p. ⟨hal-02802050⟩
  • Mathieu Gonnet, David Abrial, Elisabeth Ferquel, Alexandre Claude, Patrick Gasqui, et al.. Génomique des populations des bactéries du complexe Borrelia burgdorferi sl. Journées d'Animation Scientifique du Département Santé Animale, May 2011, Fréjus, France. pp.17 slides. ⟨hal-02806542⟩
  • Maud Marsot, Julie Marmet, Sébastien Masseglia, Patrick Gasqui, Xavier Bailly, et al.. Dynamique temporelle de l’infection des petits rongeurs par Borrelia burgdorferi sl en forêt de Sénart. 6. Rencontre des Microbiologistes du pôle Clermontois : « Les microorganismes : de l'environnement à la santé », Mar 2009, Clermont-Ferrand, France. pp.19 slides. ⟨hal-02818945⟩

Poster communications22 documents

  • Suzanne Bastian, Albert Agoulon, Xavier Bailly, Alain Butet, Amélie Chastagner, et al.. Why such a contrast between the low prevalence of zoonotic pathogens in questing ticks and the high prevalence in their verterbrate reservoir hosts?. Pathobiome 2018 “Pathogens in microbiota in hosts”, Mar 2018, Ajaccio, France. ⟨hal-02418162⟩
  • Jocelyn de Goër de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu Nguifo. PSH-DB, a key-value system to index and retrieve biological DNA sequences. 10th Extremely Large Databases Conference, Oct 2017, Clermont-Ferrand, France. ⟨hal-02082801⟩
  • Olivier Plantard, Alain Butet, Albert Agoulon, Suzanne Bastian, Thierry Hoch, et al.. Le projet "Britick Islands" : les îles bretonnes comme laboratoires naturels pour étudier l'influence de la composition des communautés d'hôtes-vertébrés sur celles des tiques et des microorganismes hébergés/transmis. 13ème réunion du GROUPE DE TRAVAIL "TIQUES ET MALADIES A TIQUES" AU SEIN DU "RESEAU ECOLOGIE DES INTERACTIONS DURABLES", Mar 2017, Nantes, France. 17 p., 2017, 13ème réunion du GROUPE DE TRAVAIL "TIQUES ET MALADIES A TIQUES" AU SEIN DU "RESEAU ECOLOGIE DES INTERACTIONS DURABLES". ⟨hal-01602786⟩
  • Aurélien Joulié, K. Sidi-Boumedine, Xavier Bailly, Patrick Gasqui, Séverine Barry, et al.. Molecular epidemiology of Coxiella burnetii reveals the circulation of three main genotype clusters in French ruminants farms. Society for Veterinary Epidemiology and Preventive Medicine (SVEPM), Mar 2016, Elsinore, Denmark. 2016. ⟨hal-02800488⟩
  • Jocelyn de Goër de Herve, Hayfa Azibi, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu Nguifo. Une nouvelle approche de comparaison de séquences ADN à l’aide d’une fonction de hachage perceptuel. Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2016, Lyon, France. ⟨hal-02082749⟩
  • Gwenaël Vourc'H, Maud Marsot, Maude Jacquot, Benoit Pisanu, Patrick Gasqui, et al.. Role of the introduced Siberian chipmunk (Tamias sibiricus) on the risk of exposure to Lyme borreliosis in a periurban forest (Sénart, Ile-de-France). International conference 'Genes, Ecosystems and Risk of Infection' (GERI 2015), Apr 2015, Heraclion, Greece. 1 p., 2015. ⟨hal-02792881⟩
  • Jocelyn de Goer de Herve, Hayfa Azibi, Myoung-Ah Kang, Samir Zghal, Xavier Bailly, et al.. Indexation et comparaison de séquences ADN à partir d'une fonction de hachage perceptuel. 16. JournéesOuvertes en Biologie, Informatique & Mathématiques (JOBIM2015), Jul 2015, Clermont-Ferrand, France. 1 p., 2015. ⟨hal-02800510⟩
  • Amélie Chastagner, Gwenaël Vourc'H, T. Dugat, Hélène Verheyden, Laurent Legrand, et al.. Several Anaplasma phagocytophilum epidemiological cycles in France revealed by sequencing. Conference GERI Genes, Ecosystems and Risk of Infection, Apr 2015, Heraklion, Greece. 2015. ⟨hal-01169445⟩
  • M. Collini, H. C. Hauffe, Sébastien Masseglia, F. Albonico, D. Arnoldi, et al.. Identifying the last bloodmeal of questing wood tick nymphs (Ixodes ricinus L.) by DNA amplification: three approaches tested. International conference 'Genes, Ecosystems and Risk of Infection' (GERI 2015), Apr 2015, Heraclion, Greece. 1 p., 2015. ⟨hal-02798877⟩
  • Jean-Francois J.-F. Cosson, Maxime Galan, Xavier Bailly, Maria Razzauti, Emilie Bard, et al.. Metagenomics highlights new epidemiological cycles between ticks and rodents. International conference 'Genes, Ecosystems and Risk of Infection' (GERI 2015), Apr 2015, Heraclion, Greece. 1 p., 2015. ⟨hal-02798965⟩
  • Thibaud Dugat, Amelie Chastagner, Doria Haciane, Anne-Claire Lagrée, B. Durand, et al.. Genetic diversity study of Anaplasma phagocytophilum circulating in domestic and wild ruminants in France by Multiple-Locus Variable-number tandem repeat Analysis. 25. International Congress on Rickettsia and Other Intracellular Bacteria, Jun 2015, Lausanne, Switzerland. 2015. ⟨hal-02799841⟩
  • Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc'H, Hélène Verheyden, L. Legrand, et al.. Three clusters of Anaplasma phagocytophilum isolates from clinical cases of French domestic animals revealed by multi-locus sequence analysis. 8. International meeting of Ticks and tick-borne pathogens (TTP 8), Aug 2014, Cap Town, South Africa. 1 p., 2014. ⟨hal-02796868⟩
  • Jocelyn de Goër de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu Nguifo. A perceptual hash algorithm for indexing and similarity search in a database of DNA sequence. ECCB'14, the 13th European Conference on Computational Biology, Sep 2014, Strasbourg, France. ⟨hal-02082793⟩
  • Jocelyn de Goer de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. A perceptual hash algorithm for indexing and similarity search in a database of DNA sequence. 3. European Conference on Computational Biology, Sep 2014, Strasbourg, France. 2014. ⟨hal-02795025⟩
  • Thibaud Dugat, Amelie Chastagner, R. Maillard, Agnès Leblond, Gwenaël Vourc'H, et al.. Development of a multiple locus VNTR analysis for Anaplasma phagocytophilum. 10. International Meeting on Microbial Epidemiological Markers (IMMEM), Oct 2013, Paris, France. 1 p., 2013. ⟨hal-02805917⟩
  • Jocelyn de Goer de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. Stockage, indexation et comparaison d’une grande quantité de données génomiques à l’aide d’algorithmes de traitement d’images dans un environnement d’exécution NoSQL et GPU. Journées de l'Ecole Doctorale des Sciences Pour l’Ingénieur (EDSPI), Jun 2013, Fréjus, France. 1 p., 2013. ⟨hal-02803574⟩
  • Jocelyn de Goer de Herve, Myoung-Ah Kang, Xavier Bailly, Engelbert Mephu-Nguifo. Indexation d'une grande quantité de séquences ADN dans une base de données NoSQL à l'aide d'algorithmes de hachage perceptuel. 29. Journées "Bases de Données Avancées" (BDA), Oct 2013, Nantes, France. 1 p., 2013. ⟨hal-02810171⟩
  • Amelie Chastagner, Thibaud Dugat, Gwenaël Vourc'H, Hélène Verheyden, L. Legrand, et al.. Development of new markers for the characterization of Anaplasma phagocytophilum by MLST. 10. International Meeting on Microbial Epidemiological Markers (IMMEM), Oct 2013, Paris, France. 1 p., 2013. ⟨hal-02810017⟩
  • Suzanne Bastian, Maggy Jouglin, Agnès Bouju-Albert, Xavier Bailly, Laurence Malandrin. Approche métagénomique de la diversité des protozoaires ( Apicomplexa, Piroplasmidés) transmis par les tiques Ixodes ricinus dans une forêt urbaine. 2. Colloque de Génomique Environnementale (GE), Nov 2013, Rennes, France. 2013. ⟨hal-02749944⟩
  • Agnès Leblond, Amelie Chastagner, S. Pradier, Xavier Bailly, Sébastien Masseglia, et al.. Eco-epidemiology of Anaplasma phagocytophilum in the south of France. 6. International Meeting on Emerging Diseases (IMED), Feb 2013, Vienna, Austria. 1 p., 2013. ⟨hal-02802260⟩
  • Maude Jacquot, Maxime Bisseux, David Abrial, Maud Marsot, Sébastien Masseglia, et al.. Genetic differentiation among the Borrelia burgdorferi species complex that infect small mammals in a peri-urban forest. 10. International Meeting on Microbial Epidemiological Markers (IMMEM), Oct 2013, Paris, France. 1 p., 2013. ⟨hal-02806536⟩
  • Maude Pithon, Maxime Bisseux, Maud Marsot, Sébastien Masseglia, Jean - Louis Chapuis, et al.. Caractérisation de cycles épidémiologiques de Borrelia burgdorferi sl par approche moléculaire. Journées des Microbiologistes de l'INRA, Nov 2012, L'Isle-sur-la-Sorgue, France. 1 p., 2012. ⟨hal-02808737⟩

Other publications4 documents

  • Gwenaël Vourc'H, Karine Chalvet-Monfray, Xavier Bailly. COVID-19 : comprendre une épidémie. 2020. ⟨hal-02952906⟩
  • Gwenaël Vourc'H, Karine Chalvet-Monfray, Xavier Bailly. Entretien spécial coronavirus : Comment démarre une épidémie ?. 2020. ⟨hal-02952916⟩
  • Karine Chalvet-Monfray, Gwenaël Vourc'H, Xavier Bailly. La modélisation en pratique dans la gestion d’une épidémie. 2020. ⟨hal-02951855⟩
  • Xavier Bailly, Amélie Chastagner. Raw sequencing data of Anaplasma phagocytophilum loci (ankA, msp4, groEL) obtained from 454 and parameter files to clean these data using MOTHUR.. 2017, ⟨10.15454/1.4869812271558027E12⟩. ⟨hal-01608891⟩

Preprints, Working Papers, ...1 document

  • Arnaud Cougoul, Xavier Bailly, Ernst Wit. MAGMA: inference of sparse microbial association networks. 2020. ⟨hal-02961823⟩