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65

CV Virginie Marchand


Journal articles50 documents

  • Jacinthe Azevedo-Favory, Christine Gaspin, Lilia Ayadi, Charlotte Montacié, Virginie Marchand, et al.. Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants. RNA Biology, Taylor & Francis, 2021, pp.1-18. ⟨10.1080/15476286.2020.1869892⟩. ⟨hal-03150158⟩
  • Virginie Marchand, Yuri Motorin. Detection and functions of viral RNA modifications: perspectives in biology and medicine. Virologie, John Libbey Eurotext 2021, 25 (2), pp.5-20. ⟨10.1684/vir.2021.0884⟩. ⟨hal-03229182⟩
  • Yasemin Yoluç, Gregor Ammann, Pierre Barraud, Manasses Jora, Patrick Limbach, et al.. Instrumental analysis of RNA modifications. Critical Reviews in Biochemistry and Molecular Biology, Taylor & Francis, 2021, pp.1-27. ⟨10.1080/10409238.2021.1887807⟩. ⟨hal-03150697⟩
  • Yuri Motorin, Virginie Marchand. Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update. Genes, MDPI, 2021, 12 (2), pp.278. ⟨10.3390/genes12020278⟩. ⟨hal-03165905⟩
  • Florian Pichot, Virginie Marchand, Mark Helm, Yuri Motorin. Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications. Genes, MDPI, 2021, 12 (1), pp.81. ⟨10.3390/genes12010081⟩. ⟨hal-03114536⟩
  • Matthias Heiss, Felix Hagelskamp, Virginie Marchand, Yuri Motorin, Stefanie Kellner. Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo. Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.389. ⟨10.1038/s41467-020-20576-4⟩. ⟨hal-03114535⟩
  • Sébastien Relier, Julie Ripoll, Hélène Guillorit, Amandine Amalric, Cyrinne Achour, et al.. FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell. Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.1716. ⟨10.1038/s41467-021-21758-4⟩. ⟨hal-03178788v2⟩
  • Virginie Marchand, Florian Pichot, Paul Neybecker, Lilia Ayadi, Valérie Bourguignon-Igel, et al.. HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA. Nucleic Acids Research, Oxford University Press, 2020, 48 (19), pp.e110. ⟨10.1093/nar/gkaa769⟩. ⟨hal-02957799⟩
  • Stephan Werner, Lukas Schmidt, Virginie Marchand, Thomas Kemmer, Christoph Falschlunger, et al.. Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes. Nucleic Acids Research, Oxford University Press, 2020, 48 (7), pp.3734 - 3746. ⟨10.1093/nar/gkaa113⟩. ⟨hal-02492494⟩
  • Florian Pichot, Virginie Marchand, Lilia Ayadi, Valerie Bourguignon-Igel, Mark Helm, et al.. Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2′-O-Methylations in RNA by RiboMethSeq. Frontiers in Genetics, Frontiers, 2020, 11, pp.38. ⟨10.3389/fgene.2020.00038⟩. ⟨hal-02498335⟩
  • Marco Kristen, Johanna Plehn, Virginie Marchand, Kristina Friedland, Yuri Motorin, et al.. Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides. Genes, MDPI, 2020, 11 (8), pp.950. ⟨10.3390/genes11080950⟩. ⟨hal-02929785⟩
  • Margarita Angelova, Dilyana Dimitrova, Bruno Da silva, Virginie Marchand, Caroline Jacquier, et al.. tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila. Nucleic Acids Research, Oxford University Press, 2020, ⟨10.1093/nar/gkaa002⟩. ⟨hal-02445153⟩
  • Virginie Marcel, Janice Kielbassa, Virginie Marchand, Kundhavai s Natchiar, Hermes Paraqindes, et al.. Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer. NAR Cancer, Oxford University Press, 2020, 2 (4), pp.1-12. ⟨10.1093/narcan/zcaa036⟩. ⟨inserm-03103238⟩
  • Stephan Werner, Aurellia Galliot, Florian Pichot, Thomas Kemmer, Virginie Marchand, et al.. NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination. Nucleic Acids Research, Oxford University Press, 2020, ⟨10.1093/nar/gkaa1173⟩. ⟨hal-03093648⟩
  • Valerie de Crecy-Lagard, Robert Ross, Marshall Jaroch, Virginie Marchand, Christina Eisenhart, et al.. Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168. Biomolecules, MDPI, 2020, 10 (7), pp.977. ⟨10.3390/biom10070977⟩. ⟨hal-02915956⟩
  • Carole Trzaska, Séverine Amand, Christine Bailly, Catherine Leroy, Virginie Marchand, et al.. 2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations. Nature Communications, Nature Publishing Group, 2020, 11 (1), pp.1509. ⟨10.1038/s41467-020-15140-z⟩. ⟨hal-02515244⟩
  • Charif Rashka, Sébastien Hergalant, Natacha Dreumont, Abderrahim Oussalah, Jean-Michel Camadro, et al.. Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing. Human Molecular Genetics, Oxford University Press (OUP), 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩. ⟨hal-03100129⟩
  • Adeline Galvanin, Lea-Marie Vogt, Antonia Grober, Isabel Freund, Lilia Ayadi, et al.. Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response. Nucleic Acids Research, Oxford University Press, 2020, 48 (22), pp.12833-12844. ⟨10.1093/nar/gkaa1123⟩. ⟨hal-03071703⟩
  • Dominik Jacob, Kathrin Thüring, Aurellia Galliot, Virginie Marchand, Adeline Galvanin, et al.. Absolute quantification of noncoding RNA by microscale thermophoresis. Angewandte Chemie International Edition, Wiley-VCH Verlag, 2019, 58 (28), pp.9565-9569. ⟨10.1002/anie.201814377⟩. ⟨hal-02078064⟩
  • Jiajie Wei, Rigel Kishton, Matthew Angel, Crystal Conn, Nicole Dalla-Venezia, et al.. Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance. Molecular Cell, Elsevier, 2019, ⟨10.1016/j.molcel.2018.12.020⟩. ⟨hal-02007743⟩
  • Lukas Schmidt, Stephan Werner, Thomas Kemmer, Stefan Niebler, Marco Kristen, et al.. Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures. Frontiers in Genetics, Frontiers, 2019, 10, pp.876. ⟨10.3389/fgene.2019.00876⟩. ⟨hal-02317684⟩
  • Adeline Galvanin, Gabriel Dostert, Lilia Ayadi, Virginie Marchand, Emilie Velot, et al.. Diversity and heterogeneity of extracellular RNA in human plasma. Biochimie, Elsevier, 2019, 164, pp.22-36. ⟨10.1016/j.biochi.2019.05.011⟩. ⟨hal-02140106⟩
  • Isabel Freund, Daniel Buhl, Sébastien Boutin, Annika Kotter, Florian Pichot, et al.. 2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms. RNA, Cold Spring Harbor Laboratory Press, 2019, 25 (7), pp.869-880. ⟨10.1261/rna.070243.118⟩. ⟨hal-02113259⟩
  • Mathieu Ringeard, Virginie Marchand, Etienne Decroly, Yuri Motorin, Yamina Bennasser. FTSJ3 is an RNA 2′-O-methyltransferase recruited by HIV to avoid innate immune sensing. Nature, Nature Publishing Group, 2019, 565 (7740), pp.500-504. ⟨10.1038/s41586-018-0841-4⟩. ⟨hal-01981983⟩
  • Virginie Marchand, Lilia Ayadi, Felix Ernst, Jasmin Hertler, Valerie Bourguignon-Igel, et al.. AlkAniline-Seq: Profiling of m 7 G and m 3 C RNA Modifications at Single Nucleotide Resolution. Angewandte Chemie International Edition, Wiley-VCH Verlag, 2018, 57 (51), pp.16785-16790. ⟨10.1002/anie.201810946⟩. ⟨hal-01928435⟩
  • Yuri Motorin, Virginie Marchand. Detection and Analysis of RNA Ribose 2′-O-Methylations: Challenges and Solutions. Genes, MDPI, 2018, 9 (12), pp.642. ⟨10.3390/genes9120642⟩. ⟨hal-01969342⟩
  • Patrick Keller, Isabel Freund, Virginie Marchand, Guillaume Bec, Raven Huang, et al.. Double methylation of tRNA-U54 to 2′-O-methylthymidine (Tm) synergistically decreases immune response by Toll-like receptor 7. Nucleic Acids Research, Oxford University Press, 2018, 46 (18), pp.9764-9775. ⟨10.1093/nar/gky644⟩. ⟨hal-01864193⟩
  • Lilia Ayadi, Adeline Galvanin, Florian Pichot, Virginie Marchand, Yuri Motorin. RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions. Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , Elsevier, 2018, 1862 (3), pp.253-269. ⟨10.1016/j.bbagrm.2018.11.009⟩. ⟨hal-01969343⟩
  • Christina Dal Magro, Patrick Keller, Annika Kotter, Stephan Werner, Victor Duarte, et al.. A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure. Angewandte Chemie International Edition, Wiley-VCH Verlag, 2018, 57 (26), pp.7893-7897. ⟨10.1002/anie.201713188⟩. ⟨hal-01801500⟩
  • Jean-Louis Guéant, Céline Chery, Abderrahim Oussalah, Javad Nadaf, David Coelho, et al.. A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients. Nature Communications, Nature Publishing Group, 2018, 9 (1), pp.67. ⟨10.1038/s41467-017-02306-5⟩. ⟨hal-01801484⟩
  • Virginie Marchand, Florian Pichot, Kathrin Thüring, Lilia Ayadi, Isabel Freund, et al.. Next‐Generation Sequencing‐Based RiboMethSeq Protocol for Analysis of tRNA 2′‐O‐Methylation. Biomolecules, MDPI, 2017, 7 (1), pp.13. ⟨10.3390/biom7010013⟩. ⟨hal-01799272⟩
  • Joos Aschenbrenner, Stephan Werner, Virginie Marchand, Martina Adam, Yuri Motorin, et al.. Engineering of a DNA Polymerase for Direct m 6 A Sequencing. Angewandte Chemie International Edition, Wiley-VCH Verlag, 2017, 57 (2), pp.417 - 421. ⟨10.1002/anie.201710209⟩. ⟨hal-01801461⟩
  • Lilia Ayadi, Yuri Motorin, Virginie Marchand. Quantification of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol).. Methods in Molecular Biology, Humana Press/Springer Imprint, 2017, pp.29-48. ⟨10.1007/978-1-4939-7213-5_2⟩. ⟨hal-01661952⟩
  • Jenny Erales, Virginie Marchand, Baptiste Panthu, Sandra Gillot, Stéphane Belin, et al.. Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2017, 114 (49), pp.12934-12939. ⟨10.1073/pnas.1707674114⟩. ⟨hal-02191312⟩
  • Virginie Marchand, Lilia Ayadi, Aseel El Hajj, Florence Blanloeil-Oillo, Mark Helm, et al.. High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol).. Methods in Molecular Biology, Humana Press/Springer Imprint, 2017, pp.171-187. ⟨10.1007/978-1-4939-6807-7_12⟩. ⟨hal-01799289⟩
  • Sunny Sharma, Virginie Marchand, Yuri Motorin, Denis Lafontaine. Identification of sites of 2′-O-methylation vulnerability in human ribosomal RNAs by systematic mapping. Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.11490. ⟨10.1038/s41598-017-09734-9⟩. ⟨hal-01799319⟩
  • Lyudmil Tserovski, Virginie Marchand, Ralf Hauenschild, Florence Blanloeil-Oillo, Mark Helm, et al.. High-throughput sequencing for 1-methyladenosine (m1A) mapping in RNA. Methods, Elsevier, 2016, 107, pp.110 - 121. ⟨10.1016/j.ymeth.2016.02.012⟩. ⟨hal-01474109⟩
  • Virginie Marchand, Florence Blanloeil-Oillo, Mark Helm, Yuri Motorin. Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA. Nucleic Acids Research, Oxford University Press, 2016, 44 (16), ⟨10.1093/nar/gkw547⟩. ⟨hal-01452312⟩
  • V. Marchand, Christiane Branlant. Quantification and quality control of a small non-coding RNA preparation.. Methods in Molecular Biology, Humana Press/Springer Imprint, 2015, pp.17-28. ⟨10.1007/978-1-4939-2547-6_3⟩. ⟨hal-01866546⟩
  • Sanjay Ghosh, Ales Obrdlik, V. Marchand, Anne Ephrussi. The EJC Binding and Dissociating Activity of PYM Is Regulated in Drosophila. PLoS Genetics, Public Library of Science, 2014, 10 (6), ⟨10.1371/journal.pgen.1004455⟩. ⟨hal-01866561⟩
  • Sanjay Ghosh, V. Marchand, Imre Gaspar, Anne Ephrussi. Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA. Nature Structural and Molecular Biology, Nature Publishing Group, 2012, 19 (4), pp.441 - 449. ⟨10.1038/nsmb.2257⟩. ⟨hal-01866563⟩
  • V. Marchand, Imre Gaspar, Anne Ephrussi. An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes. Current Opinion in Cell Biology, Elsevier, 2012, 24 (2), pp.202 - 210. ⟨10.1016/j.ceb.2011.12.014⟩. ⟨hal-01866924⟩
  • V. Marchand, Maryline Santerre, Christelle Aigueperse, Laetitia Fouillen, Jean-Michel Saliou, et al.. Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K.. RNA Biology, Taylor & Francis, 2011, pp.325-42. ⟨hal-01866938⟩
  • Shih-Jung Fan, V. Marchand, Anne Ephrussi. Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization. PLoS ONE, Public Library of Science, 2011, 6 (5), ⟨10.1371/journal.pone.0020612⟩. ⟨hal-01866927⟩
  • Aileen Bar, Virginie Marchand, Georges Khoury, Natacha Dreumont, Annie Mougin, et al.. Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein. Nucleic Acids Research, Oxford University Press, 2011, 39 (8), pp.3388-3403. ⟨10.1093/nar/gkq1114⟩. ⟨hal-02270591⟩
  • Sylvain Maenner, Magali Blaud, Laetitia Fouillen, Anne Savoye, Virginie Marchand, et al.. 2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association. PLoS Biology, Public Library of Science, 2010, 8 (1), pp.1000276-1 -1000276-16. ⟨10.1371/journal.pbio.1000276⟩. ⟨hal-01715217⟩
  • Jamal Tazi, Nadia Bakkour, V. Marchand, Lilia Ayadi, Amina Aboufirassi, et al.. Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action. FEBS Journal, Wiley, 2010, 277 (4), pp.867 - 876. ⟨10.1111/j.1742-4658.2009.07522.x⟩. ⟨hal-01866941⟩
  • Jean-Michel Saliou, Cyril Bourgeois, L. Ayadi-Ben Mena, Delphine Ropers, S. Jacquenet, et al.. Role of RNA structure and protein factors in the control of HIV-1 splicing. Frontiers in Bioscience, Frontiers in Bioscience, 2009, 14, pp.2714-2729. ⟨hal-00793011⟩
  • Florence Besse, Sonia López de Quinto, Virginie Marchand, Alvar Trucco, Anne Ephrussi. Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation.. Genes and Development, Cold Spring Harbor Laboratory Press, 2009, 23 (2), pp.195-207. ⟨10.1101/gad.505709⟩. ⟨hal-00437642⟩
  • V. Marchand, Agnès Méreau, Sandrine Jacquenet, Denise Thomas, Annie Mougin, et al.. A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding.. Journal of Molecular Biology, Elsevier, 2002, pp.629-52. ⟨10.1016/S0022-2836(02)00967-1⟩. ⟨hal-01866980⟩

Conference papers6 documents

  • Charbel Alfeghaly, Valentin Vautrot, Virginie Marchand, Yuri Motorin, Isabelle Behm-Ansmant, et al.. Molecular dissection of lncRNA activities: ANRIL as Model System. Bermuda Principles: Impact on Splicing 3rd Annual Conference, Feb 2019, Southampton, Bermuda. ⟨hal-02968414⟩
  • Charbel Alfeghaly, Valentin Vautrot, Virginie Marchand, Yuri Motorin, Isabelle Behm-Ansmant, et al.. Molecular dissection of lncRNA activities: ANRIL as Model System. 11th sifrARN, Nov 2018, Vandoeuvre-les-Nancy, France. ⟨hal-02968425⟩
  • Virginie Marchand, Alexander Dalpke, Mark Helm, Yuri Motorin. High-throughput profiling of tRNA 2'-O-methylation in Bacteria. Conference Nucleic Acids and Immunity, Jun 2017, Brno, Czech Republic. ⟨hal-02946396⟩
  • Virginie Marchand, Florence Blanloeil-Oillo, Mark Helm, Yuri Motorin. High-throughput mapping of 2'-O-methylated residues in RNA by next- generation sequencing RNA modification; methylation; high-throughput sequencing; pathology. 10th SifrARN Meeting 2016 SFBBM Toulouse, Mar 2016, Toulouse, France. ⟨hal-02946334⟩
  • Virginie Marchand, Emilie Velot, Yuri Motorin. Comprehensive characterization of human extracellular RNAs (exRNAs) in plasma by high- throughput sequencing. GBM Meeting 2016 CONGRES RNA BIOCHEMIE A BONN, Oct 2016, Bonn, Germany. ⟨hal-02946341⟩
  • Virginie Marchand, Valentin Vautrot, Gired Nicolas, Faiez Zannad, Patrick Rossignol, et al.. Non-coding RNAs and mRNA splicing events as biomarkers of diseases and cell control quality tools, application to heart failure prevention. 6th International Symposium Europe-China, Jul 2016, Nancy, France. ⟨hal-02968456⟩

Poster communications1 document

  • Charbel Alfeghaly, Valentin Vautrot, Virginie Marchand, Yuri Motorin, Isabelle Behm-Ansmant, et al.. Molecular dissection of lncRNA activities: ANRIL as Model System. 24th Annual Meeting of the RNA society, Jun 2019, Cracovie, Poland. ⟨hal-02968492⟩

Book sections6 documents

  • V. Marchand, Lilia Ayadi, Valérie Bourguignon-Igel, Mark Helm, Yuri Motorin. AlkAniline-Seq: A Highly Sensitive and Specific Method for Simultaneous Mapping of 7-Methyl-guanosine (m7G) and 3-Methyl-cytosine (m3C) in RNAs by High-Throughput Sequencing. Methods Mol Biol, 2298, pp.77-95, 2021, ⟨10.1007/978-1-0716-1374-0_5⟩. ⟨hal-03266408⟩
  • Virginie Marchand, Lilia Ayadi, Valérie Bourguignon-Igel, Yuri Motorin. Quantitative and Qualitative Assessment of Small RNA Preparations. Small Non-Coding RNAs, pp.17-29, 2021, ⟨10.1007/978-1-0716-1386-3_3⟩. ⟨hal-03190561⟩
  • Virginie Marchand, Adeline Galvanin, Yuri Motorin. Isolation, Extraction and Deep-Sequencing Analysis of Extracellular RNAs (exRNAs) from Human Plasma. Small Non-Coding RNAs, pp.165-182, 2021, ⟨10.1007/978-1-0716-1386-3_15⟩. ⟨hal-03190554⟩
  • Adeline Galvanin, Lilia Ayadi, Mark Helm, Yuri Motorin, Virginie Marchand. Mapping and Quantification of tRNA 2′-O-Methylation by RiboMethSeq. Methods Mol Biol, pp.273-295, 2019, ⟨10.1007/978-1-4939-8808-2_21⟩. ⟨hal-01957102⟩
  • Virginie Marchand, Annie Mougin, Agnès Méreau, Isabelle Behm-Ansmant, Yuri Motorin, et al.. Study of RNA-Protein Interactions and RNA Structure in Ribonucleoprotein Particles (RNPs). Roland K. Hartmann; Albrecht Bindereif; Astrid Schön; Eric Westhof. Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, Wiley-VCH Verlag GmbH & Co. KGaA, pp.975-1016, 2014, 9783527327645. ⟨10.1002/9783527647064.ch44⟩. ⟨hal-01957954⟩
  • Virginie Marchand, Annie Mougin, Agnes Mereau, Christiane Branlant. Study of RNA-protein interactions and RNA structure in ribonucleoprotein particles (RNP).. Handbook on RNA biochemistry Hartmann RK, Bindereif A, Schön A, Westhof E, Eds Weinheim, WILEY-VCH (172-204), 2005. ⟨hal-02202223⟩

Preprints, Working Papers, ...1 document

  • Margarita Angelova, Dilyana Dimitrova, Bruno da Silva, Virginie Marchand, Catherine Goyenvalle, et al.. tRNA 2'-O-methylation modulates small RNA silencing and life span in Drosophila. 2019. ⟨hal-02415561⟩

Theses1 document

  • Virginie Marchand. Etude des mécanismes de régulation de l'épissage des ARN de deux rétrovirus, le virus du Sarcome de Rous (RSV) et le virus responsable de l'immunodéficience humaine (VIH-1). Biologie moléculaire. Université Henri Poincaré - Nancy 1, 2005. Français. ⟨NNT : 2005NAN10190⟩. ⟨tel-01746623⟩