MARCHAND MARCHAND

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	Quantification of substoichiometric modification reveals global tsRNA hypomodification, preferences for angiogenin-mediated tRNA cleavage, and idiosyncratic epitranscriptomes of human neuronal cell-lines Florian Pichot , Marion Hogg , Virginie Marchand , Valérie Bourguignon , Elisabeth Jirström Computational and Structural Biotechnology Journal, 2023, 21, pp.401-417. ⟨10.1016/j.csbj.2022.12.020⟩ Article dans une revue hal-03930749v1
	Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing Morghan Lucas , Leszek Pryszcz , Rebeca Medina , Ivan Milenkovic , Noelia Camacho Nature Biotechnology, 2023, ⟨10.1038/s41587-023-01743-6⟩ Article dans une revue hal-04067699v1
	Ribosomal RNA-based epitranscriptomic regulation of chondrocyte translation and proteome in osteoarthritis Alzbeta Chabronova , Guus G.H. van den Akker , Bas A.C. Housmans , Marjolein M.J. Caron , Andy Cremers Osteoarthritis and Cartilage, 2023, ⟨10.1016/j.joca.2022.12.010⟩ Article dans une revue hal-03930713v1
	Nicotianamine synthase activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis Charlotte Montacié , Christophe Riondet , Lili Wei , Tommy Darrière , Alizée Weiss Journal of Experimental Botany, 2023, 74 (15), pp.4384-4400. ⟨10.1093/jxb/erad180⟩ Article dans une revue hal-04097969v1
	The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance Mira Brazane , Dilyana Dimitrova , Julien Pigeon , Chiara Paolantoni , Tao Ye Life Science Alliance, 2023, 6 (4), pp.e202201877. ⟨10.26508/lsa.202201877⟩ Article dans une revue hal-03967369v1
	Systematic mapping of rRNA 2’-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis Jonathan Delhermite , Lionel Tafforeau , Sunny Sharma , Virginie Marchand , Ludivine Wacheul PLoS Genetics, 2022, 18 (1), pp.e1010012. ⟨10.1371/journal.pgen.1010012⟩ Article dans une revue hal-03537766v1
	Studies of mutations of assembly factor Hit 1 in budding yeast suggest translation defects as the molecular basis for PEHO syndrome R. Elizabeth Dreggors-Walker , Lauren Cohen , Sohail Khoshnevis , Virginie Marchand , Yuri Motorin Journal of Biological Chemistry, 2022, 298 (9), pp.102261. ⟨10.1016/j.jbc.2022.102261⟩ Article dans une revue hal-03727002v1
	Synthesis of point-modified mRNA Jasmin Hertler , Kaouthar Slama , Benedikt Schober , Zeynep Özrendeci , Virginie Marchand Nucleic Acids Research, 2022, 50 (20), pp.e115. ⟨10.1093/nar/gkac719⟩ Article dans une revue hal-03778358v1
	Pseudouridylation of Epstein-Barr Virus Noncoding RNA EBER2 Facilitates Lytic Replication Belle Henry , Virginie Marchand , Brent Schlegel , Mark Helm , Yuri Motorin RNA, 2022, pp.rna.079219.122. ⟨10.1261/rna.079219.122⟩ Article dans une revue hal-03778341v1
	SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA Shovamayee Maharana , Stefanie Kretschmer , Susan Hunger , Xiao Yan , David Kuster Molecular Cell, 2022, 82 (19), pp.3712-3728.e10. ⟨10.1016/j.molcel.2022.08.031⟩ Article dans une revue hal-03787894v1
	Machine learning algorithm for precise prediction of 2’-O-methylation (Nm) sites from experimental RiboMethSeq datasets Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin Methods, 2022, 203, pp.311-321. ⟨10.1016/j.ymeth.2022.03.007⟩ Article dans une revue hal-03616347v1
	Ribosomal RNA 2′- O -methylations regulate translation by impacting ribosome dynamics Sohail Khoshnevis , R. Elizabeth Dreggors-Walker , Virginie Marchand , Yuri Motorin , Homa Ghalei Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (12), pp.e2117334119. ⟨10.1073/pnas.2117334119⟩ Article dans une revue hal-03612834v1
	Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs Eva Schöller , James Marks , Virginie Marchand , Astrid Bruckmann , Christopher Powell Molecular Cell, 2021, 81 (23), pp.4810-4825.e12. ⟨10.1016/j.molcel.2021.10.018⟩ Article dans une revue hal-03429971v1
	Implication of repeat insertion domains in the trans -activity of the long non-coding RNA ANRIL Charbel Alfeghaly , Aymeric Sanchez , Raphael Rouget , Quentin Thuillier , Valérie Igel-Bourguignon Nucleic Acids Research, 2021, 49 (9), pp.4954-4970. ⟨10.1093/nar/gkab245⟩ Article dans une revue hal-03202552v1
	Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update Yuri Motorin , Virginie Marchand Genes, 2021, 12 (2), pp.278. ⟨10.3390/genes12020278⟩ Article dans une revue hal-03165905v1
	Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA Yuri Motorin , Marc Quinternet , Wassim Rhalloussi , Virginie Marchand RNA Biology, 2021, pp.1-10. ⟨10.1080/15476286.2021.1974750⟩ Article dans une revue hal-03341858v1
	Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin Genes, 2021, 12 (1), pp.81. ⟨10.3390/genes12010081⟩ Article dans une revue hal-03114536v1
	Instrumental analysis of RNA modifications Yasemin Yoluç , Gregor Ammann , Pierre Barraud , Manasses Jora , Patrick A Limbach Critical Reviews in Biochemistry and Molecular Biology, 2021, 56 (2), pp.178-204. ⟨10.1080/10409238.2021.1887807⟩ Article dans une revue hal-03402194v1
	Detection and functions of viral RNA modifications: perspectives in biology and medicine Virginie Marchand , Yuri Motorin Virologie, 2021, 25 (2), pp.5-20. ⟨10.1684/vir.2021.0884⟩ Article dans une revue hal-03229182v1
	FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell Sébastien Relier , Julie Ripoll , Hélène Guillorit , Amandine Amalric , Cyrinne Achour Nature Communications, 2021, 12 (1), pp.1716. ⟨10.1038/s41467-021-21758-4⟩ Article dans une revue hal-03178788v2
	Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants Jacinthe Azevedo-Favory , Christine Gaspin , Lilia Ayadi , Charlotte Montacié , Virginie Marchand RNA Biology, 2021, 18 (11), pp.1-18. ⟨10.1080/15476286.2020.1869892⟩ Article dans une revue hal-03150158v1
	Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo Matthias Heiss , Felix Hagelskamp , Virginie Marchand , Yuri Motorin , Stefanie Kellner Nature Communications, 2021, 12 (1), pp.389. ⟨10.1038/s41467-020-20576-4⟩ Article dans une revue hal-03114535v1
	Analysis of pseudouridines and other RNA modifications using hydraPsiSeq protocol Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin Methods, 2021, ⟨10.1016/j.ymeth.2021.08.008⟩ Article dans une revue hal-03335167v1
	tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila Margarita Angelova , Dilyana Dimitrova , Bruno Da silva , Virginie Marchand , Caroline Jacquier Nucleic Acids Research, 2020, 48 (4), pp.2050-2072. ⟨10.1093/nar/gkaa002⟩ Article dans une revue hal-03456640v1
	Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response Adeline Galvanin , Lea-Marie Vogt , Antonia Grober , Isabel Freund , Lilia Ayadi Nucleic Acids Research, 2020, 48 (22), pp.12833-12844. ⟨10.1093/nar/gkaa1123⟩ Article dans une revue hal-03071703v1
	Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168 Valerie de Crecy-Lagard , Robert J. Ross , Marshall Jaroch , Virginie Marchand , Christina Eisenhart Biomolecules, 2020, 10 (7), pp.977. ⟨10.3390/biom10070977⟩ Article dans une revue hal-02915956v1
	HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA Virginie Marchand , Florian Pichot , Paul Neybecker , Lilia Ayadi , Valérie Bourguignon-Igel Nucleic Acids Research, 2020, 48 (19), pp.e110. ⟨10.1093/nar/gkaa769⟩ Article dans une revue hal-02957799v1
	Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes Stephan Werner , Lukas Schmidt , Virginie Marchand , Thomas Kemmer , Christoph Falschlunger Nucleic Acids Research, 2020, 48 (7), pp.3734 - 3746. ⟨10.1093/nar/gkaa113⟩ Article dans une revue hal-02492494v1
	NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination Stephan Werner , Aurellia Galliot , Florian Pichot , Thomas Kemmer , Virginie Marchand Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1173⟩ Article dans une revue hal-03093648v1
	Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer Virginie Marcel , Janice Kielbassa , Virginie Marchand , Kundhavai s Natchiar , Hermes Paraqindes NAR Cancer, 2020, 2 (4), pp.1-12. ⟨10.1093/narcan/zcaa036⟩ Article dans une revue inserm-03103238v1
	tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila Margarita Angelova , Dilyana G Dimitrova , Bruno Da silva , Virginie Marchand , Caroline Jacquier Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa002⟩ Article dans une revue hal-02445153v1
	Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides Marco Kristen , Johanna Plehn , Virginie Marchand , Kristina Friedland , Yuri Motorin Genes, 2020, 11 (8), pp.950. ⟨10.3390/genes11080950⟩ Article dans une revue hal-02929785v1
	2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations Carole Trzaska , Séverine Amand , Christine Bailly , Catherine Leroy , Virginie Marchand Nature Communications, 2020, 11 (1), pp.1509. ⟨10.1038/s41467-020-15140-z⟩ Article dans une revue hal-02515244v1
	Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing Charif Rashka , Sébastien Hergalant , Natacha Dreumont , Abderrahim Oussalah , Jean-Michel Camadro Human Molecular Genetics, 2020, 29 (12), pp.1969-1985. ⟨10.1093/hmg/ddaa027⟩ Article dans une revue hal-03100129v1
	Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2′-O-Methylations in RNA by RiboMethSeq Florian Pichot , Virginie Marchand , Lilia Ayadi , Valerie Bourguignon-Igel , Mark Helm Frontiers in Genetics, 2020, 11, pp.38. ⟨10.3389/fgene.2020.00038⟩ Article dans une revue hal-02498335v1
	Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance Jiajie Wei , Rigel Kishton , Matthew Angel , Crystal Conn , Nicole Dalla Venezia Molecular Cell, 2019, ⟨10.1016/j.molcel.2018.12.020⟩ Article dans une revue hal-02007743v1
	2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms Isabel Freund , Daniel Buhl , Sébastien Boutin , Annika Kotter , Florian Pichot RNA, 2019, 25 (7), pp.869-880. ⟨10.1261/rna.070243.118⟩ Article dans une revue hal-02113259v1
	Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures Lukas Schmidt , Stephan Werner , Thomas Kemmer , Stefan Niebler , Marco Kristen Frontiers in Genetics, 2019, 10, pp.876. ⟨10.3389/fgene.2019.00876⟩ Article dans une revue hal-02317684v1
	FTSJ3 is an RNA 2′-O-methyltransferase recruited by HIV to avoid innate immune sensing Mathieu Ringeard , Virginie Marchand , Etienne Decroly , Yuri Motorin , Yamina Bennasser Nature, 2019, 565 (7740), pp.500-504. ⟨10.1038/s41586-018-0841-4⟩ Article dans une revue hal-01981983v1
	Absolute quantification of noncoding RNA by microscale thermophoresis Dominik Jacob , Kathrin Thüring , Aurellia Galliot , Virginie Marchand , Adeline Galvanin Angewandte Chemie International Edition, 2019, 58 (28), pp.9565-9569. ⟨10.1002/anie.201814377⟩ Article dans une revue hal-02078064v1
	Diversity and heterogeneity of extracellular RNA in human plasma Adeline Galvanin , Gabriel Dostert , Lilia Ayadi , Virginie Marchand , Emilie Velot Biochimie, 2019, 164, pp.22-36. ⟨10.1016/j.biochi.2019.05.011⟩ Article dans une revue hal-02140106v1
	A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients Jean-Louis Guéant , Céline Chery , Abderrahim Oussalah , Javad Nadaf , David Coelho Nature Communications, 2018, 9 (1), pp.67. ⟨10.1038/s41467-017-02306-5⟩ Article dans une revue hal-01801484v1
	A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure Christina Dal Magro , Patrick Keller , Annika Kotter , Stephan Werner , Victor Duarte Angewandte Chemie International Edition, 2018, 57 (26), pp.7893-7897. ⟨10.1002/anie.201713188⟩ Article dans une revue hal-01801500v1
	AlkAniline-Seq: Profiling of m 7 G and m 3 C RNA Modifications at Single Nucleotide Resolution Virginie Marchand , Lilia Ayadi , Felix Ernst , Jasmin Hertler , Valerie Bourguignon-Igel Angewandte Chemie International Edition, 2018, 57 (51), pp.16785-16790. ⟨10.1002/anie.201810946⟩ Article dans une revue hal-01928435v1
	Double methylation of tRNA-U54 to 2′-O-methylthymidine (Tm) synergistically decreases immune response by Toll-like receptor 7 Patrick Keller , Isabel Freund , Virginie Marchand , Guillaume Bec , Raven Huang Nucleic Acids Research, 2018, 46 (18), pp.9764-9775. ⟨10.1093/nar/gky644⟩ Article dans une revue hal-01864193v1
	Detection and Analysis of RNA Ribose 2′-O-Methylations: Challenges and Solutions Yuri Motorin , Virginie Marchand Genes, 2018, 9 (12), pp.642. ⟨10.3390/genes9120642⟩ Article dans une revue hal-01969342v1
	RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions Lilia Ayadi , Adeline Galvanin , Florian Pichot , Virginie Marchand , Yuri Motorin Biochimica et Biophysica Acta - Gene Regulatory Mechanisms , 2018, 1862 (3), pp.253-269. ⟨10.1016/j.bbagrm.2018.11.009⟩ Article dans une revue hal-01969343v1
	High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol) Virginie Marchand , Lilia Ayadi , Aseel El Hajj , Florence Blanloeil-Oillo , Mark Helm Methods in Molecular Biology, 2017, 1562, pp.171-187. ⟨10.1007/978-1-4939-6807-7_12⟩ Article dans une revue hal-01799289v1
	Identification of sites of 2′-O-methylation vulnerability in human ribosomal RNAs by systematic mapping Sunny Sharma , Virginie Marchand , Yuri Motorin , Denis Lafontaine Scientific Reports, 2017, 7 (1), pp.11490. ⟨10.1038/s41598-017-09734-9⟩ Article dans une revue hal-01799319v1
	Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes Jenny Erales , Virginie Marchand , Baptiste Panthu , Sandra Gillot , Stéphane Belin Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (49), pp.12934-12939. ⟨10.1073/pnas.1707674114⟩ Article dans une revue hal-02191312v1
	Engineering of a DNA Polymerase for Direct m 6 A Sequencing Joos Aschenbrenner , Stephan Werner , Virginie Marchand , Martina Adam , Yuri Motorin Angewandte Chemie International Edition, 2017, 57 (2), pp.417 - 421. ⟨10.1002/anie.201710209⟩ Article dans une revue hal-01801461v1
	Next‐Generation Sequencing‐Based RiboMethSeq Protocol for Analysis of tRNA 2′‐O‐Methylation Virginie Marchand , Florian Pichot , Kathrin Thüring , Lilia Ayadi , Isabel Freund Biomolecules, 2017, 7 (1), pp.13. ⟨10.3390/biom7010013⟩ Article dans une revue hal-01799272v1
	Quantification of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol). Lilia Ayadi , Yuri Motorin , Virginie Marchand Methods in Molecular Biology, 2017, pp.29-48. ⟨10.1007/978-1-4939-7213-5_2⟩ Article dans une revue hal-01661952v1
	Multiplexed targeted sequencing of recurrent fusion genes in acute leukaemia P. Ruminy , V. Marchand , N Buchbinder , T Larson , B Joly Leukemia, 2016, 30 (3), pp.757-760. ⟨10.1038/leu.2015.177⟩ Article dans une revue hal-02331597v1
	Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin Nucleic Acids Research, 2016, 44 (16), ⟨10.1093/nar/gkw547⟩ Article dans une revue hal-01452312v1
	High-throughput sequencing for 1-methyladenosine (m1A) mapping in RNA Lyudmil Tserovski , Virginie Marchand , Ralf Hauenschild , Florence Blanloeil-Oillo , Mark Helm Methods, 2016, 107, pp.110-121. ⟨10.1016/j.ymeth.2016.02.012⟩ Article dans une revue hal-01474109v1
	Quantification and quality control of a small non-coding RNA preparation. V. Marchand , Christiane Branlant Methods in Molecular Biology, 2015, pp.17-28. ⟨10.1007/978-1-4939-2547-6_3⟩ Article dans une revue hal-01866546v1
	The EJC Binding and Dissociating Activity of PYM Is Regulated in Drosophila Sanjay Ghosh , Ales Obrdlik , V. Marchand , Anne Ephrussi PLoS Genetics, 2014, 10 (6), ⟨10.1371/journal.pgen.1004455⟩ Article dans une revue hal-01866561v1
	Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA Sanjay Ghosh , V. Marchand , Imre Gaspar , Anne Ephrussi Nature Structural and Molecular Biology, 2012, 19 (4), pp.441 - 449. ⟨10.1038/nsmb.2257⟩ Article dans une revue hal-01866563v1
	An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes V. Marchand , Imre Gaspar , Anne Ephrussi Current Opinion in Cell Biology, 2012, 24 (2), pp.202 - 210. ⟨10.1016/j.ceb.2011.12.014⟩ Article dans une revue hal-01866924v1
	Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K. V. Marchand , Maryline Santerre , Christelle Aigueperse , Laetitia Fouillen , Jean-Michel Saliou RNA Biology, 2011, pp.325-42 Article dans une revue hal-01866938v1
	Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein Aileen Bar , Virginie Marchand , Georges Khoury , Natacha Dreumont , Annie Mougin Nucleic Acids Research, 2011, 39 (8), pp.3388-3403. ⟨10.1093/nar/gkq1114⟩ Article dans une revue hal-02270591v1
	Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization Shih-Jung Fan , V. Marchand , Anne Ephrussi PLoS ONE, 2011, 6 (5), ⟨10.1371/journal.pone.0020612⟩ Article dans une revue hal-01866927v1
	2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association Sylvain Maenner , Magali Blaud , Laetitia Fouillen , Anne Savoye , Virginie Marchand PLoS Biology, 2010, 8 (1), pp.e1000276. ⟨10.1371/journal.pbio.1000276⟩ Article dans une revue hal-01715217v1
	Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action Jamal Tazi , Nadia Bakkour , V. Marchand , Lilia Ayadi , Amina Aboufirassi FEBS Journal, 2010, 277 (4), pp.867 - 876. ⟨10.1111/j.1742-4658.2009.07522.x⟩ Article dans une revue hal-01866941v1
	Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation. Florence Besse , Sonia López de Quinto , Virginie Marchand , Alvar Trucco , Anne Ephrussi Genes and Development, 2009, 23 (2), pp.195-207. ⟨10.1101/gad.505709⟩ Article dans une revue hal-00437642v1
	Role of RNA structure and protein factors in the control of HIV-1 splicing Jean-Michel Saliou , Cyril Bourgeois , L. Ayadi-Ben Mena , Delphine Ropers , S. Jacquenet Frontiers in Bioscience-Landmark, 2009, 14, pp.2714-2729 Article dans une revue hal-00793011v1
	Early specific free radical-related cytotoxicity of gas phase cigarette smoke an its paradoxical temporary inhibition of tar. An EPR study with the spin trap DEPMPO . M. Culcasi , A. Müller , A. Mercier , Clément J.-L. , O. Payet Chemico-Biological Interactions, 2006, 164, pp.215-231 Article dans une revue hal-00145404v1
	A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding. V. Marchand , Agnès Méreau , Sandrine Jacquenet , Denise Thomas , Annie Mougin Journal of Molecular Biology, 2002, pp.629-52. ⟨10.1016/S0022-2836(02)00967-1⟩ Article dans une revue hal-01866980v1
	Loss of containment: experimental aerosol rain-out assessment Jérôme Hocquet , J.C Adrian , M. Godeau , V. Marchand , Jean-Pierre Bigot Journal of Hazardous Materials, 2002, 93 (1), pp.67-76. ⟨10.1016/S0304-3894(02)00039-0⟩ Article dans une revue emse-00506600v1

	Contribution of epitranscriptomics in the characterization of chondrogenic differentiation of synovial fluid MSCs Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille Journée scientifique de l'ED BioSE 2023, May 2023, Vandoeuvre lès Nancy, France Communication dans un congrès hal-04231079v1
	Epitranscriptomic mapping of rRNA methylation for the characterization of chondrogenic differentiation of synovial fluid MSCs Kevin Bourge , Christel Henrionnet , V. Marchand , Didier Mainard , Damien Loeuille Congrès anniversaire du réseau cartilage de la Grande Région, Sep 2023, Sarrebruck, Germany Communication dans un congrès hal-04231176v1
	Molecular dissection of lncRNA activities: ANRIL as Model System Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant Bermuda Principles: Impact on Splicing 3rd Annual Conference, Feb 2019, Southampton, Bermuda Communication dans un congrès hal-02968414v1
	Molecular dissection of lncRNA activities: ANRIL as Model System Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant 11th sifrARN, Nov 2018, Vandoeuvre-les-Nancy, France Communication dans un congrès hal-02968425v1
	High-throughput analysis and biomedical applications of extracellular RNAs A. Galvanin , G. Dostert , V. Marchand , P. Menu , É. Velot 1er Congrès de la French Society of Extracellular Vesicles (FSEV), Nov 2017, Paris, France Communication dans un congrès hal-03368989v1
	High-throughput profiling of tRNA 2'-O-methylation in Bacteria Virginie Marchand , Alexander Dalpke , Mark Helm , Yuri Motorin Conference Nucleic Acids and Immunity, Jun 2017, Brno, Czech Republic Communication dans un congrès hal-02946396v1
	GENE EXPRESSION PROFILING USING a RTMLPA ASSAY ALLOWS FOR AN ACCURATE CLASSIFICATION OF PERIPHERAL T-CELL LYMPHOMA AND HIGHLIGHTS NOVEL SUBGROUPS WITHIN PTCLS-NOS P. Ruminy , F. Drieux , A. Abdel Sater , V. Fataccioli , V. Marchand 14th International Conference on Malignant Lymphoma, Jun 2017, Lugano, Switzerland. pp.74-75, ⟨10.1002/hon.2437_62⟩ Communication dans un congrès hal-02484212v1
	Non-coding RNAs and mRNA splicing events as biomarkers of diseases and cell control quality tools, application to heart failure prevention Virginie Marchand , Valentin Vautrot , Gired Nicolas , Faiez Zannad , Patrick Rossignol 6th International Symposium Europe-China, Jul 2016, Nancy, France Communication dans un congrès hal-02968456v1
	Valeur pronostique de la classification GCB/ABC déterminée par RT-MLPA associée à la TEP dans les lymphomes B diffus à grandes cellules A. Labois , P. Ruminy , S. Becker , H. Lanic , S. Mareschal Société Française d’Hématologie, Mar 2016, Paris, France Communication dans un congrès hal-01658125v1
	Comprehensive characterization of human extracellular RNAs (exRNAs) in plasma by high- throughput sequencing Virginie Marchand , Emilie Velot , Yuri Motorin GBM Meeting 2016 CONGRES RNA BIOCHEMIE A BONN, Oct 2016, Bonn, Germany Communication dans un congrès hal-02946341v1
	High-throughput mapping of 2'-O-methylated residues in RNA by next- generation sequencing RNA modification; methylation; high-throughput sequencing; pathology Virginie Marchand , Florence Blanloeil-Oillo , Mark Helm , Yuri Motorin 10th SifrARN Meeting 2016 SFBBM Toulouse, Mar 2016, Toulouse, France Communication dans un congrès hal-02946334v1
	SpinalCOM: Ambulatory monitoring of the Spinal Cord Olivier Tsiakaka , Mehdi Terosiet , Olivier Romain , H Benali , V Marchand Colloque du GDR SoC-SiP, Jun 2016, Nantes, France Communication dans un congrès hal-01337125v1
	Loss of containment: experimental aerosol rain-out assessment J.C Adrian , R. Lerible , V. Marchand , Jérôme Hocquet , Jean-Pierre Bigot 10th International Symposium on Loss Prevention and Safety Promotion in the Process Industries, 2001, Stockholm, Sweden. ⟨10.1016/B978-044450699-3/50022-7⟩ Communication dans un congrès hal-01350641v1

	Molecular dissection of lncRNA activities: ANRIL as Model System Charbel Alfeghaly , Valentin Vautrot , Virginie Marchand , Yuri Motorin , Isabelle Behm-Ansmant 24th Annual Meeting of the RNA society, Jun 2019, Cracovie, Poland Poster de conférence hal-02968492v1

	Data Analysis Pipeline for Detection and Quantification of Pseudouridine (ψ) in RNA by HydraPsiSeq Florian Pichot , Virginie Marchand , Mark Helm , Yuri Motorin Computational Epigenomics and Epitranscriptomics, 2624, Springer US, pp.207-223, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2962-8_14⟩ Chapitre d'ouvrage hal-03971146v1
	Mapping of 7-methylguanosine (m7G), 3-methylcytidine (m3C), dihydrouridine (D) and 5-hydroxycytidine (ho5C) RNA modifications by AlkAniline-Seq Virginie Marchand , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin Methods in Enzymology, pp.25-47, 2021, ⟨10.1016/bs.mie.2021.06.001⟩ Chapitre d'ouvrage hal-03344110v1
	Isolation, Extraction and Deep-Sequencing Analysis of Extracellular RNAs (exRNAs) from Human Plasma Virginie Marchand , Adeline Galvanin , Yuri Motorin Small Non-Coding RNAs, pp.165-182, 2021, ⟨10.1007/978-1-0716-1386-3_15⟩ Chapitre d'ouvrage hal-03190554v1
	AlkAniline-Seq: A Highly Sensitive and Specific Method for Simultaneous Mapping of 7-Methyl-guanosine (m7G) and 3-Methyl-cytosine (m3C) in RNAs by High-Throughput Sequencing V. Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Mark Helm , Yuri Motorin Methods Mol Biol, 2298, pp.77-95, 2021, ⟨10.1007/978-1-0716-1374-0_5⟩ Chapitre d'ouvrage hal-03266408v1
	Quantitative and Qualitative Assessment of Small RNA Preparations Virginie Marchand , Lilia Ayadi , Valérie Bourguignon-Igel , Yuri Motorin Small Non-Coding RNAs, 2300, pp.17-29, 2021, ⟨10.1007/978-1-0716-1386-3_3⟩ Chapitre d'ouvrage hal-03190561v1
	Mapping and Quantification of tRNA 2′-O-Methylation by RiboMethSeq Adeline Galvanin , Lilia Ayadi , Mark Helm , Yuri Motorin , Virginie Marchand Methods Mol Biol, pp.273-295, 2019, ⟨10.1007/978-1-4939-8808-2_21⟩ Chapitre d'ouvrage hal-01957102v1
	Study of RNA-Protein Interactions and RNA Structure in Ribonucleoprotein Particles (RNPs) Virginie Marchand , Annie Mougin , Agnès Méreau , Isabelle Behm-Ansmant , Yuri Motorin Roland K. Hartmann; Albrecht Bindereif; Astrid Schön; Eric Westhof. Handbook of RNA Biochemistry: Second, Completely Revised and Enlarged Edition, Wiley-VCH Verlag GmbH & Co. KGaA, pp.975-1016, 2014, 9783527327645. ⟨10.1002/9783527647064.ch44⟩ Chapitre d'ouvrage hal-01957954v1
	Study of RNA-protein interactions and RNA structure in ribonucleoprotein particles (RNP). Virginie Marchand , Annie Mougin , Agnes Mereau , Christiane Branlant Prof. Dr. Roland K. Hartmann; Prof. Dr. Albrecht Bindereif; Dr. Astrid Schön; Prof. Dr. Eric Westhof. Handbook on RNA biochemistry, Wiley, pp.172-204, 2005, 9783527308262. ⟨10.1002/9783527619504.ch11⟩ Chapitre d'ouvrage hal-02202223v1

	tRNA 2'-O-methylation modulates small RNA silencing and life span in Drosophila Margarita T Angelova , Dilyana G Dimitrova , Bruno da Silva , Virginie Marchand , Catherine Goyenvalle 2019 Pré-publication, Document de travail hal-02415561v1

	Etude des mécanismes de régulation de l'épissage des ARN de deux rétrovirus, le virus du Sarcome de Rous (RSV) et le virus responsable de l'immunodéficience humaine (VIH-1) Virginie Marchand Biologie moléculaire. Université Henri Poincaré - Nancy 1, 2005. Français. ⟨NNT : 2005NAN10190⟩ Thèse tel-01746623v1

MARCHAND MARCHAND

Publications

Quantification of substoichiometric modification reveals global tsRNA hypomodification, preferences for angiogenin-mediated tRNA cleavage, and idiosyncratic epitranscriptomes of human neuronal cell-lines

Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

Ribosomal RNA-based epitranscriptomic regulation of chondrocyte translation and proteome in osteoarthritis

Nicotianamine synthase activity affects nucleolar iron accumulation and impacts rDNA silencing and RNA methylation in Arabidopsis

The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance

Systematic mapping of rRNA 2’-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis

Studies of mutations of assembly factor Hit 1 in budding yeast suggest translation defects as the molecular basis for PEHO syndrome

Synthesis of point-modified mRNA

Pseudouridylation of Epstein-Barr Virus Noncoding RNA EBER2 Facilitates Lytic Replication

SAMHD1 controls innate immunity by regulating condensation of immunogenic self RNA

Machine learning algorithm for precise prediction of 2’-O-methylation (Nm) sites from experimental RiboMethSeq datasets

Ribosomal RNA 2′- O -methylations regulate translation by impacting ribosome dynamics

Balancing of mitochondrial translation through METTL8-mediated m3C modification of mitochondrial tRNAs

Implication of repeat insertion domains in the trans -activity of the long non-coding RNA ANRIL

Analysis of RNA Modifications by Second- and Third-Generation Deep Sequencing: 2020 Update

Constitutive and variable 2’-O-methylation (Nm) in human ribosomal RNA

Non-Redundant tRNA Reference Sequences for Deep Sequencing Analysis of tRNA Abundance and Epitranscriptomic RNA Modifications

Instrumental analysis of RNA modifications

Detection and functions of viral RNA modifications: perspectives in biology and medicine

FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell

Mapping rRNA 2’-O-methylations and identification of C/D snoRNAs in Arabidopsis thaliana plants

Cell culture NAIL-MS allows insight into human tRNA and rRNA modification dynamics in vivo

Analysis of pseudouridines and other RNA modifications using hydraPsiSeq protocol

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

Bacterial tRNA 2′-O-methylation is dynamically regulated under stress conditions and modulates innate immune response

Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168

HydraPsiSeq: a method for systematic and quantitative mapping of pseudouridines in RNA

Machine learning of reverse transcription signatures of variegated polymerases allows mapping and discrimination of methylated purines in limited transcriptomes

NOseq: amplicon sequencing evaluation method for RNA m6A sites after chemical deamination

Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer

tRNA 2′-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila

Manganese Ions Individually Alter the Reverse Transcription Signature of Modified Ribonucleosides

2,6-Diaminopurine as a highly potent corrector of UGA nonsense mutations

Analysis of fibroblasts from patients with cblC and cblG genetic defects of cobalamin metabolism reveals global dysregulation of alternative splicing

Holistic Optimization of Bioinformatic Analysis Pipeline for Detection and Quantification of 2′-O-Methylations in RNA by RiboMethSeq

Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance

2'-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms

Graphical Workflow System for Modification Calling by Machine Learning of Reverse Transcription Signatures

FTSJ3 is an RNA 2′-O-methyltransferase recruited by HIV to avoid innate immune sensing

Absolute quantification of noncoding RNA by microscale thermophoresis

Diversity and heterogeneity of extracellular RNA in human plasma

A PRDX1 mutant allele causes a MMACHC secondary epimutation in cblC patients

A Vastly Increased Chemical Variety of RNA Modifications Containing a Thioacetal Structure

AlkAniline-Seq: Profiling of m 7 G and m 3 C RNA Modifications at Single Nucleotide Resolution

Double methylation of tRNA-U54 to 2′-O-methylthymidine (Tm) synergistically decreases immune response by Toll-like receptor 7

Detection and Analysis of RNA Ribose 2′-O-Methylations: Challenges and Solutions

RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions

High-Throughput Mapping of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol)

Identification of sites of 2′-O-methylation vulnerability in human ribosomal RNAs by systematic mapping

Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes

Engineering of a DNA Polymerase for Direct m 6 A Sequencing

Next‐Generation Sequencing‐Based RiboMethSeq Protocol for Analysis of tRNA 2′‐O‐Methylation

Quantification of 2'-O-Me Residues in RNA Using Next-Generation Sequencing (Illumina RiboMethSeq Protocol).

Multiplexed targeted sequencing of recurrent fusion genes in acute leukaemia

Illumina-based RiboMethSeq approach for mapping of 2'-O-Me residues in RNA

High-throughput sequencing for 1-methyladenosine (m1A) mapping in RNA

Quantification and quality control of a small non-coding RNA preparation.

The EJC Binding and Dissociating Activity of PYM Is Regulated in Drosophila

Control of RNP motility and localization by a splicing-dependent structure in oskar mRNA

An Intracellular Transmission Control Protocol: assembly and transport of ribonucleoprotein complexes

Identification of protein partners of the human immunodeficiency virus 1 tat/rev exon 3 leads to the discovery of a new HIV-1 splicing regulator, protein hnRNP K.

Structural and functional analysis of the Rous Sarcoma virus negative regulator of splicing and demonstration of its activation by the 9G8 SR protein

Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization

2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association

Alternative splicing: regulation of HIV-1 multiplication as a target for therapeutic action

Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation.

Role of RNA structure and protein factors in the control of HIV-1 splicing

Early specific free radical-related cytotoxicity of gas phase cigarette smoke an its paradoxical temporary inhibition of tar. An EPR study with the spin trap DEPMPO .

A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding.

Loss of containment: experimental aerosol rain-out assessment

Contribution of epitranscriptomics in the characterization of chondrogenic differentiation of synovial fluid MSCs

Epitranscriptomic mapping of rRNA methylation for the characterization of chondrogenic differentiation of synovial fluid MSCs

Molecular dissection of lncRNA activities: ANRIL as Model System

Molecular dissection of lncRNA activities: ANRIL as Model System

High-throughput analysis and biomedical applications of extracellular RNAs

High-throughput profiling of tRNA 2'-O-methylation in Bacteria

GENE EXPRESSION PROFILING USING a RTMLPA ASSAY ALLOWS FOR AN ACCURATE CLASSIFICATION OF PERIPHERAL T-CELL LYMPHOMA AND HIGHLIGHTS NOVEL SUBGROUPS WITHIN PTCLS-NOS

Non-coding RNAs and mRNA splicing events as biomarkers of diseases and cell control quality tools, application to heart failure prevention