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    Publications of Vincent Lefort

    Journal articles17 documents

    • Valentin Guignon, Catherine Breton, Jérôme Mariette, Francois Sabot, Julien Fumey, et al.. Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions. PLoS Computational Biology, Public Library of Science, 2021, 17 (10), pp.#e1009321. ⟨10.1371/journal.pcbi.1009321⟩. ⟨lirmm-03385026⟩
    • Marc Chakiachvili, Sylvain Milanesi, Anne-Muriel Arigon Chifolleau, Vincent Lefort. WAVES: a web application for versatile enhanced bioinformatic services. Bioinformatics, Oxford University Press (OUP), 2019, 35 (11), pp.140-142. ⟨10.1093/bioinformatics/bty639⟩. ⟨lirmm-01888794⟩
    • Frédéric Lemoine, Damien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, et al.. new generation phylogenetic services for non-specialists. Nucleic Acids Research, Oxford University Press, 2019, 47 (W1), pp.W260-W265. ⟨10.1093/nar/gkz303⟩. ⟨hal-02341225⟩
    • Adrien Oliva, Sylvain Pulicani, Vincent Lefort, Laurent Brehelin, Olivier Gascuel, et al.. Accounting for ambiguity in ancestral sequence reconstruction. Bioinformatics, Oxford University Press (OUP), 2019, 35 (21), pp.4290-4297. ⟨10.1093/bioinformatics/btz249⟩. ⟨pasteur-02404399⟩
    • Floréal Cabanettes, Jean-François Dufayard, Vincent Berry, Vincent Lefort, Frederic de Lamotte Guéry, et al.. CompPhy2: a flexible and real time collaborative web platform for editing and comparing phylogenies. Bioinformatics, Oxford University Press (OUP), In press, In Press, pp.1-3. ⟨hal-01885401⟩
    • Vincent Lefort, Jean-Emmanuel Longueville, Olivier Gascuel. SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, Oxford University Press (OUP), 2017, 34 (9), pp.2422-2424. ⟨10.1093/molbev/msx149⟩. ⟨lirmm-01794206⟩
    • Vincent Lefort, Richard Desper, Olivier Gascuel. FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program. Molecular Biology and Evolution, Oxford University Press (OUP), 2015, 32 (10), pp.2798-2800. ⟨10.1093/molbev/msv150⟩. ⟨lirmm-01283927⟩
    • Jia-Ming Chang, Paolo Di tommaso, Vincent Lefort, Olivier Gascuel, Cedric Notredame. TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction. Nucleic Acids Research, Oxford University Press, 2015, 43 (W1), pp.W3-W6. ⟨10.1093/nar/gkv310⟩. ⟨lirmm-01283940⟩
    • Nicolas Fiorini, Vincent Lefort, François Chevenet, Vincent Berry, Anne-Muriel Arigon Chifolleau. CompPhy: a web-based collaborative platform for comparing phylogenies. BMC Evolutionary Biology, BioMed Central, 2014, 14 (1), pp.253-255. ⟨10.1186/s12862-014-0253-5⟩. ⟨lirmm-01140756⟩
    • Mathieu Lajoie, Olivier Gascuel, Vincent Lefort, Laurent Brehelin. Computational discovery of regulatory elements in a continuous expression space. Genome Biology, BioMed Central, 2012, 13 (11), pp.41. ⟨lirmm-00796453⟩
    • Cao Cuong Dang, Vincent Lefort, Vinh Le, Quang Le Si, Olivier Gascuel. ReplacementMatrix: a Web Server for Maximum Likelihood Estimation of Amino Acid Replacement Rate Matrices. Bioinformatics, Oxford University Press (OUP), 2011, 27 (19), pp.2758-2760. ⟨lirmm-00646393⟩
    • Stéphane Guindon, Jean-François Dufayard, Vincent Lefort, Maria Anisimova, Wim Hordijk, et al.. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Systematic Biology, Oxford University Press (OUP), 2010, 59 (3), pp.307-321. ⟨10.1093/sysbio/syq010⟩. ⟨lirmm-00511784v2⟩
    • Celine Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel Douzery, Vincent Ranwez. PhySIC IST : cleaning source trees to infer more informative supertrees. BMC Bioinformatics, BioMed Central, 2008, 9 (413), pp.1471-2105. ⟨10.1186/1471-2105-9-413⟩. ⟨lirmm-00324069⟩
    • Alexis Dereeper, Valentin Guignon, Guillaume Blanc, Stéphane Audic, Sylvain Buffet, et al.. robust phylogenetic analysis for the non-specialist. Nucleic Acids Research, Oxford University Press, 2008, 36 (Web Server), pp.W465-W469. ⟨10.1093/nar/gkn180⟩. ⟨lirmm-00324099⟩
    • Derek E. Wildman, Monica Uddin, Juan C. Opazo, Guozhen Liu, Vincent Lefort, et al.. Genomics, biogeography, and the diversification of placental mammals. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2007, 104 (36), pp.14395-14400. ⟨10.1073/pnas.0704342104⟩. ⟨lirmm-00193171⟩
    • Christophe Blanchet, Vincent Lefort, Christophe Combet, Gilbert Deléage. GPS@ bioinformatics portal: from network to EGEE grid. Studies in Health Technology and Informatics, IOS Press, 2006, 120 (1), pp.187-193. ⟨hal-00313733⟩
    • Judith Hirsch, Vincent Lefort, Marion Vankersschaver, Adnane Boualem, Antoine Lucas, et al.. Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts. Plant Physiology, American Society of Plant Biologists, 2006, 140 (4), pp.1192-1204. ⟨10.1104/pp.105.073817⟩. ⟨hal-00118293⟩

    Conference papers1 document

    • Nicolas Bard, Sylvie Boin, François Bothorel, Philippe Chaumeil, Philippe Collinet, et al.. E-Biothon : Une plate-forme pour accélérer les recherches en biologie, santé et environnement. Journées SUCCES 2013, Groupe d'Interet Scientifique (GIS). FRA., Nov 2013, Paris, France. ⟨hal-00927495⟩

    Poster communications1 document

    • Floréal Cabanettes, Marc Chakiachvili, Vincent Lefort, Jean-François Dufayard, Frederic de Lamotte Guéry, et al.. CompPhy v2 : une plate-forme collaborative pour visualiser et comparer des phylogénies. JOBIM: Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. 437 p., 2016, JOBIM 2016. ⟨hal-01594479⟩