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Inferring the timing of territoriality and rut in male roe deer from movements? Some preliminary results - and new perspectives

 Nicolas Morellet , Vincent Miele , Christophe Bonenfant
6. EURODEER meeting, Jun 2017, Grimsö, Sweden
Communication dans un congrès hal-02793581v1

DNA physical properties determine nucleosome occupancy from yeast to fly

 V. Miele , C. Vaillant , Y. d'Aubenton-Carafa , C. Thermes , T. Grange
Nucleic Acids Research, 2008, 36, pp.3746-3756
Article dans une revue hal-00428131v1

DNA sequence drives nucleosome occupancy of yeast promoters

 V. Miele , C. Vaillant , Y. d'Aubenton , David Robelin , B. Prum , et al.
incollection, 2006, --, pp.2783-2784
Article dans une revue hal-00427880v1
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Deep learning for species identification of modern and fossil rodent molars

 Vincent Miele , Gaspard Dussert , Thomas Cucchi , S. Renaud
2020
Pré-publication, Document de travail hal-03024134v1

Fruiting Strategies of Perennial Plants: A Resource Budget Model to Couple Mast Seeding to Pollination Efficiency and Resource Allocation Strategies

 Samuel Venner , A. Siberchicot , P.F. Pélisson , E. Schermer , Marie-Claude Bel-Venner , et al.
The American Naturalist, 2016, 188 (1), pp.66-75. ⟨10.1086/686684⟩
Article dans une revue hal-02049895v1
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Spatially constrained clustering of ecological networks

 Vincent Miele , Franck Picard , S. Dray
Methods in Ecology and Evolution, 2014, 5 (8), pp.771-779. ⟨10.1111/2041-210X.12208⟩
Article dans une revue hal-02045124v1

Uncovering structure in biological networks

 J.J. Daudin , Vincent Lacroix , M. Mariadassou , V. Miele , Franck Picard , et al.
incollection, 2006, --, pp.471-483
Article dans une revue hal-00427936v1

Inferring the timing of territoriality and rut in male roe deer from movements?

 Nicolas Morellet , Christophe Bonenfant , Vincent Miele , Marco Heurich , Stefano Focardi
8. EURODEER meeting, Jun 2016, Badia di Moscheta, Italy
Communication dans un congrès hal-02793574v1

Core-periphery structure in mutualistic networks: an epitaph for nestedness?

 Ana Martín González , Diego Vázquez , Rodrigo Ramos-Jiliberto , Sang Hoon Lee , Vincent Miele
2021
Pré-publication, Document de travail hal-03418833v1
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An appraisal of graph embeddings for comparing trophic network architectures

 Christophe Botella , Stéphane Dray , Catherine Matias , Vincent Miele , Wilfried Thuiller
Methods in Ecology and Evolution, 2022, 13 (1), pp.203-216. ⟨10.1111/2041-210X.13738⟩
Article dans une revue hal-03191630v2
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DNA Physical Properties and Nucleosome Positions Are Major Determinants of HIV-1 Integrase Selectivity

 Monica Naughtin , Zofia Haftek-Terreau , Johan Xavier , Sam Meyer , Maud Silvain , et al.
PLoS ONE, 2015, 10, pp.e0129427. ⟨10.1371/journal.pone.0129427⟩
Article dans une revue pasteur-01416841v1
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Non-trophic interactions strengthen the diversity-functioning relationship in an ecological bioenergetic network model

 Vincent Miele , Christian Guill , Rodrigo Ramos-Jiliberto , Sonia Kéfi
PLoS Computational Biology, 2019, 15 (8), pp.e1007269. ⟨10.1371/journal.pcbi.1007269⟩
Article dans une revue hal-02331446v1
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The DeepFaune initiative: a collaborative effort towards the automatic identification of European fauna in camera trap images

 Noa Rigoudy , Gaspard Dussert , Abdelbaki Benyoub , Aurélien Besnard , Carole Birck , et al.
European Journal of Wildlife Research, 2023, 69, 24 p. ⟨10.1007/s10344-023-01742-7⟩
Article dans une revue hal-04278674v1

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

 Vincent Miele , Simon Penel , Vincent Daubin , Franck Picard , Daniel Kahn , et al.
Bioinformatics, 2012, 28 (8), pp.1078-85. ⟨10.1093/bioinformatics/bts098⟩
Article dans une revue hal-00965711v1

Fast online graph clustering via Erdos–Rényimixture

 H. Zanghi , C. Ambroise , V. Miele
Pattern Recognition, 2008, 41, pp.3592-3599
Article dans une revue hal-00428182v1

Calcul parallèle avec R

 Vincent Miele , Violaine Louvet
EDP sciences, 2016, 978-2-7598-2060-3
Ouvrages hal-02090003v1
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DNA physical properties determine nucleosome occupancy from yeast to fly.

 Vincent Miele , Cédric Vaillant , Yves d'Aubenton-Carafa , Claude Thermes , Thierry Grange
Nucleic Acids Research, 2008, 36 (11), pp.3746-56. ⟨10.1093/nar/gkn262⟩
Article dans une revue hal-00319296v1
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Revisiting giraffe photo-identification using deep learning and network analysis

 Vincent Miele , Gaspard Dussert , Bruno Spataro , Simon Chamaillé-Jammes , Dominique Allainé , et al.
2020
Pré-publication, Document de travail hal-03029446v1
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Nine tips for ecologists using machine learning

 Marine Desprez , Vincent Miele , Olivier Gimenez
2023
Pré-publication, Document de travail hal-04168831v1
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Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

 Yvan Le Bras , Olivier Collin , Cyril Monjeaud , Vincent Lacroix , Eric Rivals , et al.
GigaScience, 2016, 5 (1), ⟨10.1186/s13742-015-0105-2⟩
Article dans une revue hal-01280238v1

Taking into account missing genotypes and errors in Family Based Association Testing using an Expectation-Maximization framework

 V. Miele , Y. Slaoui , A. Rebai
incollection, 2008, --, pp.508-514
Article dans une revue hal-00428088v1

Fast and Parallel Algorithm for Population-Based Segmentation of Copy-Number Profiles

 Guillem Rigaill , Vincent Miele , Franck Picard
Lecture Notes in Computer Science, 2014, 8452, pp.248-258
Article dans une revue hal-02045097v1

Beyond accuracy : score calibration in deep learning models for camera trap image sequences

 Gaspard Dussert , Simon Chamaillé-Jammes , Stéphane Dray , Vincent Miele
2023
Pré-publication, Document de travail hal-04305463v1

A reversible jump Markov chain Monte Carlo algorithm for bacterial promoter motifs discovery

 P. Nicolas , A.-S. Tocquet , V. Miele , F. Muri
Journal of Computational Biology, 2006, 13, pp.651-667
Article dans une revue hal-00428049v1
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Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

 Leandro Lima , Blerina Sinaimeri , Gustavo Sacomoto , Helene Lopez-Maestre , Camille Marchet , et al.
Algorithms for Molecular Biology, 2017, 12 (1), pp.2. ⟨10.1186/s13015-017-0091-2⟩
Article dans une revue hal-01474524v1
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Statistical clustering of temporal networks through a dynamic stochastic block model

 Catherine Matias , Vincent Miele
Journal of the Royal Statistical Society: Series B, 2017, 79 (4), pp.1119-1141. ⟨10.1111/rssb.12200⟩
Article dans une revue hal-01167837v2

Chapter 6: Using Latent Block Models to Detect Structure in Ecological Networks

 Julie J. Aubert , Pierre M Barbillon , Sophie Donnet , Vincent Miele
Statistical Approaches for Hidden Variables in Ecology., Wiley, pp.117-134, 2022, ⟨10.1002/9781119902799.ch6⟩
Chapitre d'ouvrage hal-03811607v1
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Ecological networks to unravel the routes to horizontal transposon transfers

 Samuel Venner , Vincent Miele , Christophe Terzian , Christian Biemont , Vincent Daubin , et al.
PLoS Biology, 2017, 15 (2), ⟨10.1371/journal.pbio.2001536⟩
Article dans une revue hal-01608245v1
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Nine Quick Tips for Analyzing Network Data

 Vincent Miele , Stephane S. Robin , Catherine Matias , Stéphane Dray
PLoS Computational Biology, 2019, 15 (12), pp.e1007434. ⟨10.1371/journal.pcbi.1007434⟩
Article dans une revue hal-02089501v2

seq++: a package for biological sequences analysis with a range of Markov-related models

 V. Miele , P.Y. Bourguignon , David Robelin , Gregory Nuel , H. Richard
Bioinformatics, 2005, 21, pp.2783-2784
Article dans une revue hal-00427832v1
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