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Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme

 Bareket Dassa , Ilya Borovok , Vincent Lombard , Bernard Henrissat , Raphael Lamed , et al.
Microorganisms, 2017, 5 (4), pp.74. ⟨10.3390/microorganisms5040074⟩
Article dans une revue hal-01802953v1
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Densité de nids de Myrmica en tourbière : exemple de la tourbière de Jouvion (Puy-de-Dôme)

 Luc Belenguier , Marine Kreder² , Vincent Lombard , Mathilde Poussin , Christophe Galkovsky
BIOM - Revue scientifique pour la biodiversité du Massif central, 2020, 1 (1), pp.35-48. ⟨10.18145/biom.v1i1.255⟩
Article dans une revue hal-02975128v1

Discovery of hyperstable carbohydrate‐active enzymes through metagenomics of extreme environments

 Andrea Strazzulli , Beatrice Cobucci‐ponzano , Roberta Iacono , Rosa Giglio , Luisa Maurelli , et al.
FEBS Journal, 2020, 287 (6), pp.1116-1137. ⟨10.1111/febs.15080⟩
Article dans une revue hal-02612557v1
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

 Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩
Article dans une revue hal-03082507v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans

 Pascal Lapébie , Vincent Lombard , Elodie Drula , Nicolas Terrapon , Bernard Henrissat
Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩
Article dans une revue hal-02588181v1
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How members of the human gut microbiota overcome the sulfation problem posed by glycosaminoglycans

 Alan Cartmell , Elisabeth Lowe , Arnaud Basle , Susan Firbank , Didier Ndeh , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (27), pp.7037-7042. ⟨10.1073/pnas.1704367114⟩
Article dans une revue hal-01802836v1
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Discovery of genes coding for carbohydrate-active enzyme by metagenomic analysis of lignocellulosic biomasses

 Salvatore Montella , Valeria Ventorino , Vincent Lombard , Bernard Henrissat , Olimpia Pepe , et al.
Scientific Reports, 2017, 7, pp.42623. ⟨10.1038/srep42623⟩
Article dans une revue hal-01802808v1
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Role of Glycoside Phosphorylases in Mannose Foraging by Human Gut Bacteria

 Simon Ladeveze , Laurence Tarquis , Davide Cecchini , Juliette Bercovici , Isabelle André , et al.
Journal of Biological Chemistry, 2013, 288 (45), pp.32370-32383. ⟨10.1074/jbc.M113.483628⟩
Article dans une revue hal-02650371v1
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Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

 Lucia Zifcakova , Tomas Vetrovsky , Vincent Lombard , Bernard Henrissat , Adina Howe , et al.
Microbiome, 2017, 5, ⟨10.1186/s40168-017-0340-0⟩
Article dans une revue hal-01615072v1

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

 Ake Olson , Andrea Aerts , Fred Asiegbu , Lassaâd Belbahri , Ourdia Bouzid , et al.
New Phytologist, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩
Article dans une revue hal-02649642v1
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Fungal secretomics of ascomycete fungi for biotechnological applications

 Marie Couturier , David Navarro , Anne Favel , Mireille Haon , C. Lechat , et al.
Mycosphere Journal, 2016, 7 (10), pp.1546 - 1553. ⟨10.5943/mycosphere/si/3b/6⟩
Article dans une revue hal-01594592v1
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α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1

 Mickael Lafond , Alexandra Tauzin , Laetitia Bruel , Elisabeth Laville , Vincent Lombard , et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.579521⟩
Article dans une revue hal-03003380v1
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CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems

 Anne Abot , Grégory Arnal , Lucas Auer , Adèle Lazuka , Delphine Labourdette , et al.
BMC Genomics, 2016, 17 (1), pp.1-12. ⟨10.1186/s12864-016-2988-4⟩
Article dans une revue hal-01843061v1
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A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

 Sean Ma , Yolanda Chen , Martin Ma , Joshua Benoit , Anita Bhandari , et al.
Scientific Reports, 2018, 8 (1), pp.1931. ⟨10.1038/s41598-018-20154-1⟩
Article dans une revue hal-02094614v1

Dissecting Partner Recognition by an Intrinsically Disordered Protein Using Descriptive Random Mutagenesis

 Antoine Gruet , Marion Dosnon , Andrea Vassena , Vincent Lombard , Denis Gerlier , et al.
Journal of Molecular Biology, 2013, 425 (18), pp.3495-3509. ⟨10.1016/j.jmb.2013.06.025⟩
Article dans une revue hal-02475076v1
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

 Yoann Seeleuthner , Samuel Mondy , Vincent Lombard , Quentin Carradec , Eric Pelletier , et al.
Nature Communications, 2018, 9, pp.310. ⟨10.1038/s41467-017-02235-3⟩
Article dans une revue hal-01771839v1

Adaptation fonctionnelle des communautés microbiennes en réponse à l’exportation massive de biomasse végétale en forêt : une analyse transcriptomique.

 Lucas Auer , François Maillard , Vincent M Lombard , Bernard Henrissat , Laurent Saint‐andré , et al.
5ème colloque du GDR de Génomique Environnementale, Oct 2019, La Rochelle, France
Communication dans un congrès hal-03339752v1

The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes

 Dimitrios Floudas , Manfred Binder , Robert Riley , Kerrie Barry , Robert A. Blanchette , et al.
Science, 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩
Article dans une revue hal-01268324v1
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Comparative Metagenomics of Cellulose- and Poplar Hydrolysate-Degrading Microcosms from Gut Microflora of the Canadian Beaver (Castor canadensis) and North American Moose (Alces americanus) after Long-Term Enrichment

 Mabel Wong , Weijun Wang , Marie Couturier , Fakhria Razeq , Vincent Lombard , et al.
Frontiers in Microbiology, 2017, 8, pp.2504. ⟨10.3389/fmicb.2017.02504⟩
Article dans une revue hal-01802956v1

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

 Live Hagen , Charles Brooke , Claire Shaw , Angela Norbeck , Hailan Piao , et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (2), pp.421-434. ⟨10.1038/s41396-020-00769-x⟩
Article dans une revue hal-03167202v1

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation

 Olov Svartström , Johannes Alneberg , Nicolas Terrapon , Vincent Lombard , Ino de Bruijn , et al.
The International Society of Microbiologial Ecology Journal, 2017, 11 (11), pp.2538-2551. ⟨10.1038/ismej.2017.108⟩
Article dans une revue hal-02328246v1
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The carbohydrate-active enzymes database (CAZy) in 2013

 Bernard Henrissat , Vincent M Lombard , Elodie Drula , Pedro Coutinho , Hemalatha Golaconda Ramulu
Nucleic Acids Research, 2014, 42 (D1), pp.D490-D495. ⟨10.1093/nar/gkt1178⟩
Article dans une revue inserm-04405153v1
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A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16)

 Alexander Holm Viborg , Nicolas Terrapon , Vincent Lombard , Gurvan Michel , Mirjam Czjzek , et al.
Journal of Biological Chemistry, In press, 294 (44), pp.15973 - 15986. ⟨10.1074/jbc.RA119.010619⟩
Article dans une revue hal-02291008v2
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Discovery of fungal oligosaccharide-oxidising flavo-enzymes with previously unknown substrates, redox-activity profiles and interplay with LPMOs

 Majid Haddad Momeni , Folmer Fredslund , Bastien Bissaro , Olanrewaju Raji , Thu Vuong , et al.
Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-22372-0⟩
Article dans une revue hal-03234953v1
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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

 Anthony Levasseur , Elodie Drula , Vincent Lombard , Pedro M Coutinho , Bernard Henrissat
Biotechnology for Biofuels, 2013, 6 (41), pp.1-14. ⟨10.1186/1754-6834-6-41⟩
Article dans une revue hal-01268121v1

Functional signatures of soil fungal communities in response to forest tree phenology revealed by metatranscriptome analysis

 Marc Buée , Lucas Auer , Patricia Luis , Olivier Rué , Valentin Loux , et al.
3rd MPItM-Labex ARBRE Workshop, Nov 2018, cologne, Germany
Communication dans un congrès hal-03339776v1

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

 Keith Mewis , Nicolas Lenfant , Vincent Lombard , Bernard Henrissat
Applied and Environmental Microbiology, 2016, 82 (6), pp.1686-1692. ⟨10.1128/AEM.03453-15⟩
Article dans une revue hal-01439073v1
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A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment

 Junhua Li , Huanzi Zhong , Yuliaxis Y. Ramayo-Caldas , Nicolas Terrapon , Vincent Lombard , et al.
GigaScience, 2020, 9 (6), pp.1-15. ⟨10.1093/gigascience/giaa057⟩
Article dans une revue hal-02860679v1

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

 Nicolas Terrapon , Vincent Lombard , Harry J. Gilbert , Bernard Henrissat
Bioinformatics, 2015, 31 (5), pp.647-655. ⟨10.1093/bioinformatics/btu716⟩
Article dans une revue hal-01438994v1
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Investigating host-microbiome interactions by droplet based microfluidics

 Alexandra S Tauzin , Mariana Rangel Pereira , Liisa D van Vliet , Pierre-Yves Colin , Elisabeth Laville , et al.
Microbiome, 2020, 8 (1), ⟨10.1186/s40168-020-00911-z⟩
Article dans une revue hal-02961383v1
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