Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

58 résultats
Page :
triés par

Identification de motifs dans les réseaux métaboliques

 Vincent Lacroix
incollection, 2008, --, pp.D1-D5
Article dans une revue hal-00428083v1

Analysis of RNA Transcripts by High-Throughput RNA Sequencing

 Paolo Ribeca , Vincent Lacroix , Michael Sammeth , Roderic Guigó
Stefan Stamm, Christopher W. J. Smith, Reinhard Lührmann. Alternative pre-mRNA Splicing: Theory and Protocols, Wiley-VCH Verlag GmbH & Co. KGaA, 2012, 9783527636778. ⟨10.1002/9783527636778.ch50⟩
Chapitre d'ouvrage hal-00850866v1
Image document

Evidence for transcript networks composed of chimeric RNAs in human cells

 Sarah Djebali , Julien Lagarde , Philipp Kapranov , Vincent Lacroix , Christelle Borel , et al.
PLoS ONE, 2012, 7 (1), Non paginé. ⟨10.1371/journal.pone.0028213⟩
Article dans une revue hal-01216248v2
Image document

Reference-free detection of isolated SNPs

 Raluca Uricaru , Guillaume Rizk , Vincent Lacroix , Elsa Quillery , Olivier Plantard , et al.
Nucleic Acids Research, 2014, 43 (2), pp.e11. ⟨10.1093/nar/gku1187⟩
Article dans une revue hal-01083715v1

RNA-seq without a reference genome: a comparison of the mapping and the assembly approaches

 M.-C. Carpentier , J. Charif , Vincent Lacroix , Marie-France Sagot , Fabrice Vavre
JOBIM, 2011, Paris, France
Communication dans un congrès hal-00748612v1
Image document

Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms

 Paulo Vieira Milreu , Vicente Acuña , Etienne E. Birmelé , Pierluigi Crescenzi , Alberto Marchetti-Spaccamela , et al.
Workshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩
Communication dans un congrès hal-00751339v1
Image document

Influenza virus infection induces widespread alterations of host cell splicing

 Usama Ashraf , Clara Benoit-Pilven , Vincent Navratil , Cécile Ligneau , Guillaume Fournier , et al.
NAR Genomics and Bioinformatics, 2020, 2 (4), ⟨10.1093/nargab/lqaa095⟩
Article dans une revue hal-03021806v1

Assessing the exceptionality of coloured motifs in networks

 Sophie S. Schbath , Vincent Lacroix , Marie-France Sagot
EURASIP Journal on Bioinformatics and Systems Biology, 2009, 2009, 9 p. on line. ⟨10.1155/2009/616234⟩
Article dans une revue hal-02656035v1
Image document

Metabolic network visualization eliminating node redundance and preserving metabolic pathways

 Romain Bourqui , L. Cottret , Vincent Lacroix , D. Auber , P. Mary , et al.
BMC Biology, 2007, 1 - n°29, pp.1-19. ⟨10.1186/1752-0509-1-29⟩
Article dans une revue hal-00434765v1

Uncovering structure in biological networks

 J.J. Daudin , Vincent Lacroix , M. Mariadassou , V. Miele , Franck Picard , et al.
incollection, 2006, --, pp.471-483
Article dans une revue hal-00427936v1
Image document

Efficient Bubble Enumeration in Directed Graphs

 Etienne E. Birmelé , Pierluigi Crescenzi , Rui Ferreira , Roberto Grossi , Vincent Lacroix , et al.
String Processing and Information Retrieval (SPIRE), Oct 2012, Cartagena, Colombia. pp.118-129, ⟨10.1007/978-3-642-34109-0_13⟩
Communication dans un congrès hal-00738927v1
Image document

Minimum ratio cover of matrix columns by extreme rays of its induced cone

 Alexandre da Silva Freire , Vicente Acuña , Pierluigi Crescenzi , Carlos Eduardo Ferreira , Vincent Lacroix , et al.
Proceedings of the Second international Symposium on Combinatorial Optimization (ISCO), Apr 2012, Athens, Greece. pp.165--177, ⟨10.1007/978-3-642-32147-4_16⟩
Communication dans un congrès hal-00763453v1
Image document

Absence of a core metabolic network common to symbiotic bacteria

 Cecilia Coimbra Klein , Ludovic Cottret , Hubert Charles , Christian Gautier , Ana Tereza Ribeiro de Vasconcelos , et al.
6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives
Communication dans un congrès hal-02806316v1
Image document

New insights into minor splicing-a transcriptomic analysis of cells derived from TALS patients

 Audric Cologne , Clara Benoit-Pilven , Alicia Besson , Audrey Putoux , Amandine Campan-Fournier , et al.
RNA, 2019, pp.1-21. ⟨10.1261/rna.071423.119⟩
Article dans une revue hal-02305628v1
Image document

Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data

 Clara Benoit-Pilven , Camille Marchet , Emilie Chautard , Leandro Lima , Marie-Pierre Lambert , et al.
Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-21770-7⟩
Article dans une revue hal-01924204v1
Image document

Reaction Motifs in Metabolic Networks

 Vincent Lacroix , Cristina Gomes Fernandes , Marie-France Sagot
RR-5563, INRIA. 2005, pp.14
Rapport inria-00070443v1

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data

 Gustavo Akio Tominaga Sacomoto , Vincent Lacroix , Marie-France Sagot
Workshop on Algorithms in Bioinformatics (WABI), Sep 2013, Nice, France
Communication dans un congrès hal-00842982v1

Motif search in graphs: application to metabolic networks.

 Vincent Lacroix , C.G. Fernandes , M.-F. Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2006, 3 - n°4, pp.360-368
Article dans une revue hal-00427984v1
Image document

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs

 Gustavo Sacomoto , Vincent Lacroix , Marie‑france Sagot
Algorithms for Molecular Biology, 2015, pp.10. ⟨10.1186/s13015-015-0046-4⟩
Article dans une revue hal-01170399v1
Image document

Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy

 Fernande Freyermuth , Frédérique Rau , Yosuke Kokunai , Thomas Linke , Chantal Sellier , et al.
Nature Communications, 2016, 7, pp.11067. ⟨10.1038/ncomms11067⟩
Article dans une revue hal-01301863v1
Image document

Identification of misexpressed genetic elements in hybrids between Drosophila-related species

 Hélène Lopez-Maestre , Elias Alberto Gutierrez Carnelossi , Vincent Lacroix , Nelly Burlet , Bruno Mugat , et al.
Scientific Reports, 2017, 7, pp.40618. ⟨10.1038/srep40618⟩
Article dans une revue hal-01524879v2

New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data

 Alice Julien-Laferriere , Gustavo Sacomoto , Rayan Chikhi , Erwan Scaon , David P. Parsons , et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2013, Toulouse, France
Communication dans un congrès hal-02069363v1
Image document

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

 Amélie Véron , Claire Lemaitre , Christian Gautier , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2011, 12 (1), pp.303. ⟨10.1186/1471-2164-12-303⟩
Article dans une revue hal-00784423v1

Navigating in a Sea of Repeats in RNA-seq without Drowning

 Gustavo Sacomoto , Blerina Sinaimeri , Camille Marchet , Vincent Miele , Marie-France Sagot , et al.
WABI 2014 - 14th International Workshop on Algorithms in Bioinformatics, Sep 2014, Wroclaw, Poland. pp.82-96, ⟨10.1007/978-3-662-44753-6_7⟩
Communication dans un congrès hal-01079947v1

Metabolic network visualization using constraint planar graph drawing algorithm

 Romain Bourqui , D. Auber , Vincent Lacroix , F. Jourdan
incollection, 2006, --, pp.489-496
Article dans une revue hal-00427907v1
Image document

Procédé de fabrication de Gaz Naturel de Synthèse par couplage d'une méthanation avec une électrolyse de vapeur d'eau à haute température

 Myriam de Saint Jean , Vincent Lacroix , Pierre Baurens , Chakib Bouallou
XIVeme congrès SFGP, Oct 2013, Lyon, France. pp.2012214
Communication dans un congrès cea-00876659v1
Image document

Short and long-term genome stability analysis of prokaryotic genomes

 Matteo Brilli , Pietro Liò , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2013, 14 (1), pp.309. ⟨10.1186/1471-2164-14-309⟩
Article dans une revue hal-00834426v1
Image document

Clinical interpretation of variants identified in RNU4ATAC, a non-coding spliceosomal gene

 Clara Benoit-Pilven , Alicia Besson , Audrey Putoux , Claire Benetollo , Clément Saccaro , et al.
PLoS ONE, 2020, 15 (7), pp.e0235655. ⟨10.1371/journal.pone.0235655⟩
Article dans une revue inserm-02915106v1

NGS without a reference genome, comparison and visualisation of non assembled data

 Vincent Lacroix
Statistical Methods for Post-Genomic Data (SMPGD), 2011, Paris, France
Communication dans un congrès hal-00748787v1

An introduction to metabolic networks and their structural analysis.

 Vincent Lacroix , Ludovic Cottret , Patricia Thebault , Marie-France Sagot
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (4), pp.594-617. ⟨10.1109/TCBB.2008.79⟩
Article dans une revue hal-00355497v1
Page :