Evolution of Prokaryotic Pangenomes
Florent Lassalle
,
Vincent Daubin
Chapitre d'ouvrage
hal-02567150v1
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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Jean-Marc Aury
,
Olivier Jaillon
,
L. Duret
,
Benjamin Noel
,
Claire Jubin
,
et al.
Article dans une revue
hal-00132091v1
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Dual control of host actin polymerization by a Legionella effector pair
M. Pillon
,
C. Michard
,
N. Baïlo
,
J. Bougnon
,
K. Picq
,
et al.
2023
Pré-publication, Document de travail
hal-04255253v1
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Phylogenetics and the cohesion of bacterial genomes
Vincent Daubin
,
N.A. Moran
,
H. Ochman
Science , 2003, 301, pp.829-832
Article dans une revue
hal-00427390v1
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Examining bacterial species under the specter of gene transfer and exchange
H. Ochman
,
E. Lerat
,
Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America , 2005, 102, pp.6595-6599
Article dans une revue
hal-00427799v1
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Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes
Gabriel A.B. Marais
,
Bérénice Batut
,
Vincent Daubin
Article dans une revue
hal-03066151v1
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Relative time constraints improve molecular dating
Gergely J Szöllősi
,
Sebastian Höhna
,
Tom A Williams
,
Dominik Schrempf
,
Vincent Daubin
,
et al.
2021
Pré-publication, Document de travail
hal-03070561v1
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Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens
Florent Lassalle
,
Tony Campillo
,
Ludovic Vial
,
Jessica Baude
,
Denis Costechareyre
,
et al.
Article dans une revue
halsde-00723400v1
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Horizontal Gene Transfer and the History of Life
Vincent Daubin
,
Gergely Szöllősi
Article dans une revue
hal-01913857v1
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Phylogenetic reconciliation
Hugo Menet
,
Vincent Daubin
,
Eric Tannier
Article dans une revue
hal-03258402v2
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Evolutionary origins of genomic repertoires in bacteria
E. Lerat
,
Vincent Daubin
,
H. Ochman
,
N.A. Moran
PLoS Biology , 2005, 3, pp.0807-0814
Article dans une revue
hal-00427770v1
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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history
Vincent Daubin
,
Manolo Gouy
,
G. Perrière
Article dans une revue
hal-00427259v1
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Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation
Simon Penel
,
Hugo Menet
,
Théo Tricou
,
Vincent Daubin
,
Eric Tannier
Article dans une revue
hal-03563666v1
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Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
Philippe Normand
,
Pascal Lapierre
,
Louis S. Tisa
,
Johann Peter Gogarten
,
Nicole Alloisio
,
et al.
Article dans une revue
halsde-00140365v1
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Tracing Human Ancestral Migrations Using Symbiotic Bacteria
Alexia Nguyen Trung
,
Bastien Boussau
,
Vincent Daubin
Groupe des Méthodes Pluridisciplinaires Contribuant à l'Archéologie (GMPCA) , May 2019, Montreal, Canada
Communication dans un congrès
hal-03068231v1
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Dealing with incongruence in phylogenomic analyses
N. Galtier
,
Vincent Daubin
Philosophical Transactions of the Royal Society B: Biological Sciences , 2008, --, pp.1233-1241
Article dans une revue
hal-00428227v1
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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers
Cédric Chauve
,
Akbar A Rafiey
,
Adrian A Davin
,
Celine Scornavacca
,
Philippe Veber
,
et al.
Autre publication scientifique
hal-01532738v3
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Mathieu Groussin
,
Bastien Boussau
,
Gergely J Szollosi
,
Laura Eme
,
Manolo Gouy
,
et al.
Article dans une revue
hal-01913926v1
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Tpms: a Tree Pattern-matching Utility for Querying Gene Trees Collections
Thomas Bigot
,
Vincent Daubin
,
G. Perrière
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM) , Jun 2011, Paris, France. pp.111-112
Communication dans un congrès
hal-02069428v1
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Evolution of gene neighborhoods within reconciled phylogenies
Sèverine Bérard
,
Coralie Gallien
,
Bastien Boussau
,
Gergely J Szöllosi
,
Vincent Daubin
,
et al.
Article dans une revue
hal-00733178v1
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Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Florent Lassalle
,
Rémi Planel
,
Simon Penel
,
David Chapulliot
,
Valérie Barbe
,
et al.
Article dans une revue
hal-01913841v1
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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria
Emmanuelle Lerat
,
Vincent Daubin
,
Nancy Moran
Article dans une revue
hal-00427440v1
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High-quality sequence clustering guided by network topology and multiple alignment likelihood.
Vincent Miele
,
Simon Penel
,
Vincent Daubin
,
Franck Picard
,
Daniel Kahn
,
et al.
Article dans une revue
hal-00965711v1
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TPMS: a set of utilities for querying collections of gene trees.
Thomas Bigot
,
Vincent Daubin
,
Florent Lassalle
,
Guy Perrière
Article dans une revue
hal-00972257v1
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Reductive genome evolution at both ends of bacterial population size spectrum
Bérénice Batut
,
Carole Knibbe
,
Gabriel Marais
,
Vincent Daubin
Article dans une revue
hal-01092392v1
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Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid
Martha H. Ramírez-Bahena
,
Ludovic Vial
,
Florent Lassalle
,
Benjamin Diel
,
David Chapulliot
,
et al.
Article dans une revue
hal-01010660v1
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Genome-scale phylogenetic analysis finds extensive gene transfer among fungi
G.J. Szollosi
,
Adrián Arellano Davin
,
Eric Tannier
,
Vincent Daubin
,
Bastien Boussau
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990) , 2015, 370, 20140335 (11 p.).
⟨10.1098/rstb.2014.0335⟩
Article dans une revue
hal-01218565v1
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Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?
Hemalatha Golaconda Ramulu
,
Mathieu Groussin
,
Emmanuel Talla
,
Rémi Planel
,
Vincent Daubin
,
et al.
Article dans une revue
hal-01913940v1
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Démasquage des gènes spécifiques d'une espèce génomique du complexeAgrobacterium tumefaciens par AFLP et multicapteur à ADN
Perrine Portier
,
Denis Costechareyre
,
Daniel Muller
,
David Chapulliot
,
Christine Oger
,
et al.
7. Colloque national du Bureau des Ressources Génétiques , 2008, Strasbourg, France
Communication dans un congrès
hal-02753900v1
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Divergence between Drosophila santomea and allopatric or sympatric populations of D. yakuba using paralogous amylase genes and migration scenarios along the Cameroon volcanic line
M.L. Cariou
,
J.F. Silvain
,
Vincent Daubin
,
J.L. da Lage
,
D. Lachaise
Molecular Ecology , 2001, 10, pp.649-660
Article dans une revue
hal-00427204v1
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