CV Vincent Calvez, CNRS & ICJ, Lyon

Anne-Geneviève Marcelin, Charlotte Charpentier, Aude Jary, Marine Perrier, Nicolas Margot, et al.. Frequency of capsid substitutions associated with GS-6207 in vitro resistance in HIV-1 from antiretroviral-naive and -experienced patients: Resistance to HIV capsid inhibitors. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2020, 75 (6), pp.1588-1590. ⟨10.1093/jac/dkaa060⟩. ⟨hal-02949451⟩

Alexa Sadier, Monika Twarogowska, Klara Steklikova, Luke Hayden, Anne Lambert, et al.. Modeling Edar expression reveals the hidden dynamics of tooth signaling center patterning. PLoS Biology, Public Library of Science, 2019, 17 (2), pp.e3000064. ⟨10.1371/journal.pbio.3000064⟩. ⟨hal-02080524⟩

Léo Girardin, Vincent Calvez, Florence Débarre. Catch me if you can: a spatial model for a brake-driven gene drive reversal. Bulletin of Mathematical Biology, Springer Verlag, 2019, 81 (12), pp.5054-5088. ⟨hal-01954463v2⟩

Vincent Calvez, Thomas Lepoutre, Nicolas Meunier, Nicolas Muller. Non-linear analysis of a model for yeast cell communication. ESAIM: Mathematical Modelling and Numerical Analysis, EDP Sciences, In press, pp.1-32. ⟨10.1051/m2an/2019065⟩. ⟨hal-02372511⟩

Vincent Calvez. Chemotactic waves of bacteria at the mesoscale. Journal of the European Mathematical Society, European Mathematical Society, 2019, 22 (2), pp.593-668. ⟨10.4171/JEMS/929⟩. ⟨hal-01340375⟩

Marc Wirden, Fabienne de Oliveira, Magali Bouvier-Alias, Sidonie Lambert-Niclot, Marie-Laure Chaix, et al.. New HIV-1 circulating recombinant form 94: from phylogenetic detection of a large transmission cluster to prevention in the age of geosocial-networking apps in France, 2013 to 2017. Eurosurveillance, European Centre for Disease Prevention and Control, 2019, 24 (39), ⟨10.2807/1560-7917.ES.2019.24.39.1800658⟩. ⟨hal-02383043⟩

Joseph Larmarange, Mamadou Diallo, Nuala Mcgrath, Collins Iwuji, Mélanie Plazy, et al.. Temporal trends of population viral suppression in the context of Universal Test and Treat: the ANRS 12249 TasP trial in rural South Africa. Journal of the International AIDS Society, BioMed Central (2008-2012) ; International Aids Society (2008-) ; Wiley (2017-), 2019, 22 (10), ⟨10.1002/jia2.25402⟩. ⟨hal-02611981⟩

Minh Patrick Lê, Marc Antoine Valantin, Lambert Assoumou, Cathia Soulié, Soizic Le Mestre, et al.. Lack of a Clinically Significant Pharmacokinetic Interaction between Etravirine and Raltegravir Using an Original Approach Based on Drug Metabolism, Protein Binding, and Penetration in Seminal Fluid: A Pharmacokinetic Substudy of the ANRS-163 ETRAL Study. Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, Wiley, 2019, 39 (4), pp.514-520. ⟨10.1002/phar.2242⟩. ⟨hal-02442744⟩

Vincent Calvez, Jimmy Garnier, Florian Patout. ASYMPTOTIC ANALYSIS OF A QUANTITATIVE GENETICS MODEL WITH NONLINEAR INTEGRAL OPERATOR. Journal de l'École polytechnique — Mathématiques, École polytechnique, 2019, 6, pp.537-579. ⟨10.5802/jep.100⟩. ⟨hal-01910655v3⟩

Vincent Calvez, Pierre Gabriel, Álvaro Mateos González. Limiting Hamilton-Jacobi equation for the large scale asymptotics of a subdiffusion jump-renewal equation. Asymptotic Analysis, IOS Press, 2019, 115 (1-2), pp.63-94. ⟨10.3233/ASY-191528⟩. ⟨hal-01372949v2⟩

Pierre Evenou, Julien Rossignol, Gaelle Pembouong, Adélie Gothland, Dmitri Colesnic, et al.. Bridging β-Cyclodextrin Prevents Self-Inclusion, Promotes Supramolecular Polymerization, and Promotes Cooperative Interaction with Nucleic Acids. Angewandte Chemie International Edition, Wiley-VCH Verlag, 2018, 57 (26), pp.7753-7758. ⟨10.1002/anie.201802550⟩. ⟨hal-02357564⟩

Nathalie Désiré, Lorenzo Cerutti, Quentin Le Hingrat, Marine Perrier, Stefan Emler, et al.. Characterization update of HIV-1 M subtypes diversity and proposal for subtypes A and D sub-subtypes reclassification. Retrovirology, BioMed Central, 2018, 15, pp.80. ⟨10.1186/s12977-018-0461-y⟩. ⟨hal-01997960⟩

Marine Perrier, Nathalie Désiré, Alexandre Storto, Eve Todesco, Christophe Rodriguez, et al.. Evaluation of different analysis pipelines for the detection of HIV-1 minority resistant variants. PLoS ONE, Public Library of Science, 2018, 13 (6), pp.e0198334. ⟨10.1371/journal.pone.0198334⟩. ⟨hal-01840454⟩

Anne Derache, Collins Iwuji, Kathy Baisley, Siva Danaviah, Anne-Geneviève Marcelin, et al.. Impact of next generation sequencing defined HIV pre-treatment drug resistance on virological outcomes in the ANRS 12249 treatment as prevention trial. Clinical Infectious Diseases, Oxford University Press (OUP), In press, Epub ahead of print. ⟨10.1093/cid/ciy881/5130579⟩. ⟨hal-01900806⟩

Josue Togo, Almoustapha-Issiaka Maiga, Mariam Sylla, Bourahima Kone, Oumar Dolo, et al.. Evaluation of Two HIV Rapid Diagnostic Tests in a Context of Strains' Genetic Diversity in Mali Running Title: HIV Rapid Diagnosis Test Assessment in Bamako. AIDS Research and Human Retroviruses, Mary Ann Liebert, 2018, ⟨10.1089/AID.2017.0296⟩. ⟨hal-01973700⟩

Vincent Calvez, Benoît Perthame, Shugo Yasuda. Traveling Wave and Aggregation in a Flux-Limited Keller-Segel Model. Kinetic and Related Models , AIMS, 2018, 11 (4), pp.891-909. ⟨10.3934/krm.2018035⟩. ⟨hal-01591490⟩

Vincent Calvez, Thomas Gallouët. Blow-up phenomena for gradient flows of discrete homogeneous functionals. Applied Mathematics and Optimization, Springer Verlag (Germany), 2017. ⟨hal-01286518v2⟩

Vincent Calvez, Laurent Gosse, Monika Twarogowska. Travelling Chemotactic Aggregates at Mesoscopic Scale and BiStability. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2017, 77 (6), pp.2224-2249. ⟨hal-01923928⟩

Vincent Calvez, J.A. Carrillo, F. Hoffmann. Equilibria of homogeneous functionals in the fair-competition regime. Advances in Nonlinear Analysis, De Gruyter, 2017, 159, pp.85-128. ⟨10.1016/j.na.2017.03.008⟩. ⟨hal-02131658⟩

Eve Todesco, C. Charpentier, M. Bertine, M. Wirden, A. Storto, et al.. Disparities in HIV-1 transmitted drug resistance detected by ultradeep sequencing between men who have sex with men and heterosexual populations. HIV Medicine, Wiley, 2017, ⟨10.1111/hiv.12508⟩. ⟨hal-01518302⟩

Josephine Brice, Mariam Sylla, Sophie Sayon, Fatoumata Telly, Djeneba Bocar-Fofana, et al.. Qualitative and quantitative HIV antibodies and viral reservoir size characterization in vertically infected children with virological suppression. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2017, 72 (4), pp.1147-1151. ⟨10.1093/jac/dkw537⟩. ⟨hal-01548242⟩

Nicolas Muller, Matthieu Piel, Vincent Calvez, Raphaël Voituriez, Joana Gonçalves-Sá, et al.. A Predictive Model for Yeast Cell Polarization in Pheromone Gradients. PLoS Computational Biology, Public Library of Science, 2016, 12 (4), pp.e1004795. ⟨10.1371/journal.pcbi.1004795⟩. ⟨hal-01334085⟩

Vincent Calvez, Gaël Raoul, Christian Schmeiser. Confinement by biased velocity jumps: aggregation of Escherichia coli. Kinetic and Related Models , AIMS, 2015. ⟨hal-00971302⟩

Emeric Bouin, Vincent Calvez, Grégoire Nadin. Propagation in a kinetic reaction-transport equation: travelling waves and accelerating fronts. Archive for Rational Mechanics and Analysis, Springer Verlag, 2015, 217 (2), pp.571-617. ⟨hal-00849405v2⟩

Cathia Soulié, Diane Descamps, Vé Ronique Schneider, Mary-Anne Trabaud, Laurence Morand-Joubert, et al.. Antiretroviral-naive and -treated HIV-1 patients can harbour more resistant viruses in CSF than in plasma. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2015, 70 (2), pp.566-572. ⟨10.1093/jac/dku419⟩. ⟨hal-02291062⟩

Christophe Rodriguez, Cathia Soulié, Anne-Geneviève Marcelin, Vincent Calvez, Diane Descamps, et al.. HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to Maraviroc. PLoS ONE, Public Library of Science, 2015, 10 (6), pp.e0127816. ⟨10.1371/journal.pone.0127816⟩. ⟨hal-01486790⟩

Vincent Calvez, Thomas Gallouët. Particle approximation of the one dimensional Keller-Segel equation, stability and rigidity of the blow-up.. Discrete and Continuous Dynamical Systems - Series A, American Institute of Mathematical Sciences, 2015. ⟨hal-00968347⟩

Emeric Bouin, Vincent Calvez, Grégoire Nadin. Hyperbolic traveling waves driven by growth. Mathematical Models and Methods in Applied Sciences, World Scientific Publishing, 2014, 24 (6), http://www.worldscientific.com/doi/abs/10.1142/S0218202513500802. ⟨10.1142/S0218202513500802⟩. ⟨hal-00632597v2⟩

Charlotte Charpentier, Sidonie Lambert-Niclot, Claudia Alteri, Alexandre Storto, Philippe Flandre, et al.. Description of the L76V Resistance Protease Mutation in HIV-1 B and “Non-B” Subtypes. PLoS ONE, Public Library of Science, 2013, 8 (1), pp.e54381. ⟨10.1371/journal.pone.0054381⟩. ⟨hal-01614709⟩

Roman Hossein Khonsari, Julien Olivier, Paul Vigneaux, Sophie Sanchez, Paul Tafforeau, et al.. A mathematical model for mechanotransduction at the early steps of suture formation. Proceedings of the Royal Society of London. Series B, Containing papers of a Biological character. Royal Society (Great Britain), Royal Society, The, 2013, 280 (1759), pp.20122670. ⟨10.1098/rspb.2012.2670⟩. ⟨hal-00709484⟩

Floriane Lignet, Vincent Calvez, Emmanuel Grenier, Benjamin Ribba. A structural model of the VEGF signalling pathway: Emergence of robustness and redundancy properties.. Mathematical Biosciences and Engineering, AIMS Press, 2013, 10 (1), pp.167-84. ⟨10.3934/mbe.2013.10.167⟩. ⟨hal-00785874⟩

Diane Descamps, Lambert Assoumou, Marie-Laure Chaix, Antoine Chaillon, Sophie Pakianather, et al.. National sentinel surveillance of transmitted drug resistance in antiretroviral-naive chronically HIV-infected patients in France over a decade: 2001-2011. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2013, 68 (11), pp.2626-2631. ⟨10.1093/jac/dkt238⟩. ⟨hal-02291004⟩

Emeric Bouin, Vincent Calvez, Nicolas Meunier, Sepideh Mirrahimi, Benoît Perthame, et al.. Invasion fronts with variable motility: phenotype selection, spatial sorting and wave acceleration. Comptes rendus de l'Académie des sciences. Série I, Mathématique, Elsevier, 2012, 350 (15-16), pp.761-766. ⟨10.1016/j.crma.2012.09.010⟩. ⟨hal-00716349⟩

Benjamin Ribba, Gentian Kaloshi, Mathieu Peyre, Damien Ricard, Vincent Calvez, et al.. A Tumor Growth Inhibition Model for Low-Grade Glioma Treated with Chemotherapy or Radiotherapy.. Clinical Cancer Research, American Association for Cancer Research, 2012, 18 (18), pp.5071-5080. ⟨10.1158/1078-0432.CCR-12-0084⟩. ⟨hal-00744626⟩

Vincent Calvez, Marie Doumic-Jauffret, Pierre Gabriel. Self-similarity in a General Aggregation-Fragmentation Problem ; Application to Fitness Analysis. Journal de Mathématiques Pures et Appliquées, Elsevier, 2012, 98 (1), pp.1-27. ⟨10.1016/j.matpur.2012.01.004⟩. ⟨hal-00539279v2⟩

Jonathan Saragosti, Vincent Calvez, Nikolaos Bournaveas, Benoît Perthame, Axel Buguin, et al.. Directional persistence of chemotactic bacteria in a traveling concentration wave. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2011, 108 (39), pp.16235-16240. ⟨10.1073/pnas.1101996108⟩. ⟨hal-00789064⟩

Vincent Calvez, Jean-Gabriel Houot, Nicolas Meunier, Annie Raoult, Gabriela Rusnakova. Mathematical and numerical modeling of early atherosclerotic lesions. ESAIM: Proceedings, EDP Sciences, 2010, 30, pp.1-14. ⟨hal-00523348⟩

Alexis Blasselle, Vincent Calvez, Ayman Moussa. A RAINBOW INVERSE PROBLEM. ESAIM: Proceedings, EDP Sciences, 2010. ⟨hal-00518164v1⟩

Vincent Calvez, Natacha Lenuzza, Marie Doumic, Jean-Philippe Deslys, Franck Mouthon, et al.. Prion dynamics with size dependency-strain phenomena. Journal of Biological Dynamics, Taylor & Francis Open, 2010, 4 (1), pp.28-42. ⟨10.1080/17513750902935208⟩. ⟨hal-00788492⟩

Jonathan Saragosti, Vincent Calvez, Nikolaos Bournaveas, Axel Buguin, Pascal Silberzan, et al.. Mathematical description of bacterial traveling pulses. PLoS Computational Biology, Public Library of Science, 2010, http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000890. ⟨10.1371/journal.pcbi.1000890⟩. ⟨hal-00440108⟩

Vincent Calvez, Mohammed Abderrahman Ebde, Nicolas Meunier, Annie Raoult. Mathematical modelling of the atherosclerotic plaque formation. ESAIM: Proceedings, EDP Sciences, 2009, 28, pp.1-12. ⟨hal-00523290⟩

Vincent Calvez, Natacha Lenuzza, Dietmar Oelz, Jean-Philippe Deslys, Pascal Laurent, et al.. Size distribution dependence of prion aggregates infectivity. Mathematical Biosciences, Elsevier, 2009, 217 (1), pp.88-99. ⟨10.1016/j.mbs.2008.10.007⟩. ⟨hal-00789017⟩

Vincent Calvez, Pierre Gabriel, Stéphane Gaubert. Non-linear eigenvalue problems arising from growth maximization of positive linear dynamical systems. IEEE 53rd Annual Conference on Decision and Control (CDC 2014), Dec 2014, Los Angeles, United States. pp.1600--1607, ⟨10.1109/CDC.2014.7039628⟩. ⟨hal-00974749⟩

Vincent Calvez, Laurent Gosse, Monika Twarogowska. Concentration waves of chemotactic bacteria: the discrete velocity case. Innovative Algorithms and Analysis, Springer International Publishing, 2017. ⟨hal-01924071⟩

Vincent Calvez, José Antonio Carrillo, Franca Hoffmann. The Geometry of Diffusing and Self-Attracting Particles in a One-Dimensional Fair-Competition Regime. Nonlocal and Nonlinear Diffusions and Interactions: New Methods and Directions, pp.1-71, 2017. ⟨hal-02131664⟩

Emeric Bouin, Vincent Calvez, Emmanuel Grenier, Grégoire Nadin. Large deviations for velocity-jump processes and non-local Hamilton-Jacobi equations. 2019. ⟨hal-01344939v2⟩

Vincent Calvez, King-Yeung Lam. Uniqueness of the viscosity solution of a constrained Hamilton-Jacobi equation. 2018. ⟨hal-01873119⟩

Vincent Calvez, Christopher Henderson, Sepideh Mirrahimi, Olga Turanova, Thierry Dumont. Non-local competition slows down front acceleration during dispersal evolution. 2018. ⟨hal-01963994⟩

Vincent Calvez, Thomas Lepoutre, Nicolas Meunier, Nicolas Muller. Two models for yeast cell communication. 2017. ⟨hal-01498673⟩

Thibault Bourgeron, Vincent Calvez, Jimmy Garnier, Thomas Lepoutre. Existence of recombination-selection equilibria for sexual populations. 2017. ⟨hal-01489695v2⟩

Vincent Calvez, Laetitia Giraldi. Pattern selection in a biomechanical model for the growth of walled cells. 2015. ⟨hal-01118491⟩

Emeric Bouin, Vincent Calvez. Travelling waves for the cane toads equation with bounded traits.. 2013. ⟨hal-00863115⟩

Emeric Bouin, Vincent Calvez. A kinetic eikonal equation. 2012. ⟨hal-00668874⟩

Vincent Calvez, Nicolas Meunier, Nicolas Muller, Raphael Voituriez. Numerical simulation of the dynamics of molecular markers involved in cell polarisation. 2012. ⟨hal-00777040⟩

Vincent Calvez, Nicolas Meunier, Nicolas Muller, Raphael Voituriez. Numerical simulation on a cell polarisation model: the polar case. 2012. ⟨hal-00777055⟩

Olivier Benichou, Vincent Calvez, Nicolas Meunier, Raphael Voituriez. Front acceleration by dynamic selection in Fisher population waves. 2012. ⟨hal-00716348⟩

Vincent Calvez, Pierre Gabriel. Optimal growth for linear processes with affine control. 2012. ⟨hal-00681920⟩

Vincent Calvez, Rhoda Hawkins, Nicolas Meunier, Raphael Voituriez. Analysis of a non local model for spontaneous cell polarisation. 2011. ⟨hal-00594777⟩

Vincent Calvez, Lucilla Corrias, Mohammed Abderrahman Ebde. Blow-up, concentration phenomenon and global existence for the Keller-Segel model in high dimension. 2010. ⟨hal-00462450⟩

Vincent Calvez, José Antonio Carrillo. Refined Asymptotics for the subcritical Keller-Segel system and Related Functional Inequalities. 2010. ⟨hal-00503203⟩

Vincent Calvez, Nicolas Meunier. A one-dimensional Keller-Segel equation with a drift issued from the boundary. 2009. ⟨hal-00424649⟩

Nikolaos Bournaveas, Vincent Calvez. The one-dimensional Keller-Segel model with fractional diffusion of cells. 2009. ⟨hal-00398629⟩

Nikolaos Bournaveas, Vincent Calvez. Critical mass phenomenon for a chemotaxis kinetic model with spherically symmetric initial data. 2008. ⟨hal-00349928⟩

Vincent Calvez, Natacha Lenuzza, Dietmar Oelz, Jean-Philippe Deslys, Pascal Laurent, et al.. Bimodality, prion aggregates infectivity and prediction of strain phenomenon. 2008. ⟨hal-00255790⟩

Nikolaos Bournaveas, Vincent Calvez. Global existence for the kinetic chemotaxis model without pointwise memory effects, and including internal variables. 2007. ⟨hal-00256288⟩

Vincent Calvez. Modèles et analyses mathématiques pour les mouvements collectifs de cellules. Mathématiques [math]. Université Pierre et Marie Curie - Paris VI, 2007. Français. ⟨tel-00255811⟩