Keywords

Co-authors

Number of documents

55

Vincent Berry


Journal articles32 documents

Conference papers13 documents

  • Yoann Anselmetti, Vincent Berry, Cedric Chauve, Annie Chateau, Eric Tannier, et al.. Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuels. Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France. ⟨hal-01394409⟩
  • Thi-Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, et al.. Accounting for gene tree uncertainty improves gene tree accuracy as well as duplications, transfers and losses  predictions. WABI: Workshop on Algorithms in Bioinformatics, Sep 2012, Ljubljana, Slovenia. pp.123-134, ⟨10.1007/978-3-642-33122-0_10⟩. ⟨hal-01189848⟩
  • Thi-Hau Nguyen, Jean-Philippe Doyon, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Vincent Ranwez, et al.. Accounting for gene tree uncertainty improves gene tree accuracy as well as duplications, transfers and losses predictions. WABI'12 : Workshop on Algorithms in Bioinformatics, Sep 2012, Ljubljana, Slovenia. pp.N/A. ⟨hal-00718347v3⟩
  • Jean-Philippe Doyon, Celine Scornavacca, Yu Gorbunov, Gergely Szöllősi, Vincent Ranwez, et al.. An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. RECOMB'10: Comparative Genomics, Oct 2010, Ottawa, Canada. pp.93-108, ⟨10.1007/978-3-642-16181-0_9⟩. ⟨lirmm-00818889⟩
  • Jean-Philippe Doyon, Celine Scornavacca, Gergely J. Szöllősi, Vincent Ranwez, Vincent Berry. Un algorithme de parcimonie efficace pour la réconciliation d'arbres de gènes/espèces avec pertes, duplications et transferts. Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.8. ⟨lirmm-00833164⟩
  • Daniel Huson, Regula Rupp, Vincent Berry, Philippe Gambette, Christophe Paul. Computing Galled Networks from Real Data. ISMB/ECCB'09: 17th Annual Conference on Intelligent Systems for Molecular Biology & 8th European Conference on Computational Biology, Jun 2009, France. pp.i85-i93, ⟨10.1093/bioinformatics/btp217⟩. ⟨lirmm-00368545v2⟩
  • Celine Scornavacca, Vincent Berry, Vincent Ranwez. From Gene Trees to Species Trees Through a Supertree Approach. LATA'09: Third International Conference on Language and Automata Theory and Applications, Apr 2009, Tarragone, Espagne, pp.10-19. ⟨lirmm-00367086⟩
  • Philippe Gambette, Vincent Berry, Christophe Paul. The Structure of Level-k Phylogenetic Networks. CPM: Combinatorial Pattern Matching, Jun 2009, Lille, France. pp.289-300, ⟨10.1007/978-3-642-02441-2_26⟩. ⟨lirmm-00371485⟩
  • Sylvain Guillemot, Vincent Berry. Fixed-parameter Tractability of the Maximum Agreement Supertree Problem. CPM: Combinatorial Pattern Matching, 2007, Montpellier, France. pp.274-285. ⟨lirmm-00130406v2⟩
  • Vincent Berry, Vincent Ranwez, Pierre-Henri Fabre, Emmanuel Douzery. Votez veto pour l'Arbre de la Vie. JOBIM'06 : Journées Ouvertes Biologie, Informatique, Mathématiques, Jul 2006, Bordeaux, France, pp.251-263. ⟨lirmm-00131866⟩
  • Alexis Criscuolo, Vincent Berry, Emmanuel Douzery, Olivier Gascuel. SDM: Une Méthode de Distance Rapide pour les Etudes de Phylogénomique. JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jul 2005, Lyon, France. pp.231-244. ⟨lirmm-00106495⟩
  • Vincent Berry, N. Francois, Sylvain Guillemot, Christophe Paul. On the Approximation of Computing Evolutionary Trees. COCOON'05: 11th Annual International Conference on Computing and Combinatorics, 2005, pp.115-125. ⟨lirmm-00106451⟩
  • Vincent Berry, François Nicolas. Maximum Agreement and Compatible Supertrees. CPM: Combinatorial Pattern Matching, 2004, Istanbul, Turkey. pp.205-219, ⟨10.1007/978-3-540-27801-6_15⟩. ⟨lirmm-00108782⟩

Poster communications1 document

  • Floréal Cabanettes, Marc Chakiachvili, Vincent Lefort, Jean-François Dufayard, Frederic de Lamotte Guéry, et al.. CompPhy v2 : une plate-forme collaborative pour visualiser et comparer des phylogénies. JOBIM: Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. 437 p., 2016. ⟨hal-01594479⟩

Book sections2 documents

Reports6 documents

  • Sylvain Guillemot, Vincent Berry. Finding a Largest Subset of Rooted Triples Identifying a Tree is an NP-hard task. RR-07010, 2007, pp.7. ⟨lirmm-00143208⟩
  • Vincent Berry. Improving the Reduction from the Constrained to the Unconstrained MAST. 05041, 2005, pp.2. ⟨lirmm-00106642⟩
  • Vincent Berry, François Nicolas. Approximating the Maximum Compatible Tree. 05019, 2005. ⟨lirmm-00106626⟩
  • Vincent Berry. Super-Arbre d'Accord Maximum. 03040, 2003, pp.5. ⟨lirmm-00191964⟩
  • Vincent Berry. Super-Arbre d'Accord Maximum. 03040, 2003, pp.5. ⟨lirmm-00269757⟩
  • Vincent Berry. Super-arbre d'Accord Maximum. 03040, 2003, pp.5. ⟨lirmm-00269481⟩

Habilitation à diriger des recherches1 document

  • Vincent Berry. On building and comparing trees
    Application to supertrees in phylogenetics. Informatique [cs]. Université Montpellier II - Sciences et Techniques du Languedoc, 2008. ⟨tel-00360926⟩