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Integrative Analysis and Dynamical Modelling of Signalling Pathways Involved in Rheumatoid Arthritis

V. Singh , M. Ostaszewski , S. Pankaew , G. Kalliolias , G. Chiocchia , et al.
Integrating Systems Biology: From Networks to Mechanisms to Models, EMBO WORKSHOP, EMBL, 2018, Heidelberg (Germany), France
Poster de conférence hal-04482671v1

Integrative Analysis and Dynamical Modelling of Signalling Pathways Involved in Rheumatoid Arthritis

V. Singh , E. Petit-Teixeira , A. Niarakis
Wellcome Trust Advanced Courses Wellcome, 2017, Cambridge, United Kingdom
Poster de conférence hal-04482676v1
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Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map

Quentin Miagoux , Vidisha Singh , Dereck de Mézquita , Valérie Chaudru , Mohamed Elati , et al.
Journal of Personalized Medicine, 2021, 11 (8), pp.785. ⟨10.3390/jpm11080785⟩
Article dans une revue hal-03515663v1

Gene co-regulatory inference and modelling of perturbations effects on Rheumatoid Arthritis phenotypes.

Q. Miagoux , N. Zerrouk , V. Singh , E. Petit-Teixeira , A. Niarakis
Genome Campus Advanced Course: Systems Biology: From large datasets to biological insight, 2019, Cambridge, United Kingdom
Poster de conférence hal-04482631v1

Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map

Quentin Miagoux , Vidisha Singh , Dereck de Mézquita , Valerie Chaudru , Mohamed Elati , et al.
Journal of Personalized Medicine, 2021, 11 (8), pp.785. ⟨10.3390/jpm11080785⟩
Article dans une revue hal-03344139v1
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A Mechanistic Cellular Atlas of the Rheumatic Joint

Naouel Zerrouk , Sahar Aghakhani , Vidisha Singh , Franck Augé , Anna Niarakis
Frontiers in Systems Biology, 2022, ⟨10.3389/fsysb.2022.925791⟩
Article dans une revue hal-03699702v1

A Mechanistic Cellular Atlas of the Rheumatic Joint

Naouel Zerrouk , Aghakhani S. , Augé F. , A. Niarakis , V. Singh
21st European Conference on Computational Biology, 2022, Sitges, Spain
Poster de conférence hal-04482553v1
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Integrative analysis and modeling of molecular pathways dysregulated in rheumatoid arthritis

Vidisha Singh
Health. Université Paris-Saclay, 2020. English. ⟨NNT : 2020UPASL039⟩
Thèse tel-03202163v1
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Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

Anna Niarakis , Marek Ostaszewski , Alexander Mazein , Inna Kuperstein , Martina Kutmon , et al.
Frontiers in Immunology, 2024, 14, ⟨10.3389/fimmu.2023.1282859⟩
Article dans une revue hal-04454379v1

Integrative Analysis and Dynamical Modelling of Signalling Pathways Involved in Rheumatoid Arthritis

V. Singh , M. Ostaszewski , S. Pankaew , G. Kalliolias , G. Chiocchia , et al.
Solvay workshop, "Dynamics of biological systems: Modelling genetic, signalling and microbial networks", 2018, Brussel, Belgium
Poster de conférence hal-04482667v1
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A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint

Vidisha Singh , Aurélien Naldi , Sylvain Soliman , Anna Niarakis
npj Systems Biology and Applications, 2023, 9 (33), ⟨10.1038/s41540-023-00294-5⟩
Article dans une revue hal-04187223v1

Inference of a modular, large-scale Boolean network for modelling the Rheumatoid Arthritis fibroblast-like synoviocytes

Vidisha Singh , Soliman S , Anna Niarakis
5th Disease Map Community Meeting, 2020, Virtual conference, France
Communication dans un congrès hal-04482346v1

Computational Systems Biology Approach for the Study of Rheumatoid Arthritis: From a Molecular Map to a Dynamical Model

Vidisha Singh , Marek Ostaszewski , George D. Kalliolias , Gilles Chiocchia , Robert Olaso , et al.
Genomics and Computational Biology, 2018, 4 (1), pp.e100050. ⟨10.18547/gcb.2018.vol4.iss1.e100050⟩
Article dans une revue hal-02084429v1
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A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

Anna Niarakis , Marek Ostaszewski , Alexander Mazein , Inna Kuperstein , Martina Kutmon , et al.
2022
Pré-publication, Document de travail hal-03907738v1

Translating Disease Networks to Executable Boolean Models

Ss. Aghamiri , V. Singh , S. Soliman , T. Helikar , A. Niarakis
Young Researchers in Life Sciences Federation, 2019, Paris, France
Poster de conférence hal-04482647v1

Executable Disease Networks: Adding dynamics to molecular maps

V. Singh , S. Pankaew , M. Ostaszewski , Gd. Kalliolias , S. Soliman , et al.
ECCB conference, 2018, Athens, Greece
Poster de conférence hal-04482651v1

Combining bottom-up and top-down systems biology methods to obtain an integrative, global RA-specific network

Q. Miagoux , D. de Mezquita , V. Singh , S. Chalabi , E. Petit-Teixeira
5th Disease Map Community Meeting, 2020, Virtual conference, France
Poster de conférence hal-04482618v1

Integrative Analysis and Dynamical Modelling of Signalling Pathways Involved in Rheumatoid Arthritis

V. Singh , M. Ostaszewski , S. Pankaew , G. Kalliolias , G. Chiocchia , et al.
Discrete models and formal verification in biology, Murray Edwards College, 2018, Cambridge, France
Poster de conférence hal-04482656v1
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Automated inference of Boolean models from molecular interaction maps using CaSQ

Sara Sadat Aghamiri , Vidisha Singh , Aurélien Naldi , Tomáš Helikar , Sylvain Soliman , et al.
Bioinformatics, 2020, 36 (16), pp.4473-4482. ⟨10.1093/bioinformatics/btaa484⟩
Article dans une revue hal-02590714v1
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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms

Marek Ostaszewski , Anna Niarakis , Alexander Mazein , Inna Kuperstein , Robert Phair , et al.
Molecular Systems Biology, 2021, 17 (10), pp.e10387. ⟨10.15252/msb.202110387⟩
Article dans une revue hal-03385317v2

Executable Disease Networks: Adding dynamics to molecular maps

Vidisha Singh , Saran Pankaew , Marek Ostaszewski , George D. Kalliolias , Sylvain Soliman , et al.
ECCB 2018 - 17th European Conference on Computational Biology, Sep 2018, Athens, Greece
Poster de conférence hal-01875418v1

Integrative Analysis and Dynamical Modelling of Signalling Pathways Involved in Rheumatoid Arthritis

V. Singh , M. Ostaszewski , S. Pankaew , G. Kalliolias , G. Chiocchia , et al.
Young Researchers in Life Sciences Federation, Ecole Normale Supérieure, 2018, Paris, France
Poster de conférence hal-04482659v1
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RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis

Vidisha Singh , George Kalliolias , Marek Ostaszewski , Maeva Veyssière , Eleftherios Pilalis , et al.
Database - The journal of Biological Databases and Curation, 2020, 2020, pp.baaa017. ⟨10.1093/database/baaa017⟩
Article dans une revue hal-02958967v1