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A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.

Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven
BMC Bioinformatics, 2010, 11 (1), pp.99. ⟨10.1186/1471-2105-11-99⟩
Article dans une revue inserm-00663528v1

Interest of Colchicine for the Treatment of Cystic Fibrosis Patients. Preliminary Report

I. Sermet-Gaudelus , Véronique Stoven , J. Annereau , V. Witko-Sarsat , P. Reinert , et al.
Mediators of Inflammation, 1999, 8 (1), pp.13-15. ⟨10.1080/09629359990667⟩
Article dans une revue hal-03116923v1
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In Silico screening on the three-dimensional model of the Plasmodium vivax SUB1 protease leads to the validation of a novel anti-parasite compound.

Anthony Bouillon , David Giganti , Christophe Benedet , Olivier Gorgette , Stéphane Pêtres , et al.
Journal of Biological Chemistry, 2013, 288, pp.18561-73. ⟨10.1074/jbc.M113.456764⟩
Article dans une revue pasteur-01457905v1

Efficient multi-task chemogenomics for drug specificity prediction

Benoit Playe , Chloé-Agathe Azencott , Véronique Stoven
PLoS ONE, 2018, 13 (10), pp.e0204999. ⟨10.1371/journal.pone.0204999⟩
Article dans une revue hal-01984828v1

NMR Spectroscopic Analysis of the First Two Steps of the Pentose-Phosphate Pathway Elucidates the Role of 6-Phosphogluconolactonase

Emeric Miclet , Véronique Stoven , Paul A. M. Michels , Fred Opperdoes , Jean-Yves Lallemand , et al.
Journal of Biological Chemistry, 2001, 276 (37), pp.34840-34846. ⟨10.1074/jbc.m105174200⟩
Article dans une revue hal-00954878v1

Backbone H(N), N, C(alpha), C', and C(beta) assignment of the 6-phosphogluconolactonase, a 266-residue enzyme of the pentose-phosphate pathway from human parasite Trypanosoma brucei

Emeric Miclet , Francis Duffieux , Jean-Yves Lallemand , Véronique Stoven
Journal of Biomolecular NMR, 2003, 25 (3), pp.249-250. ⟨10.1023/a:1022811124329⟩
Article dans une revue istex hal-03116912v1

Design, synthesis, biological evaluation and cellular imaging of imidazo[4,5-b]pyridine derivatives as potent and selective TAM inhibitors

Tom Baladi , Jessy Aziz , Florent Dufour , Valentina Abet , Véronique Stoven , et al.
Bioorganic and Medicinal Chemistry, 2018, 26 (20), pp.5510-5530. ⟨10.1016/j.bmc.2018.09.031⟩
Article dans une revue hal-01986358v1
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Kernel Multitask Regression for Toxicogenetics

Elsa Bernard , Yunlong Jiao , Erwan Scornet , Véronique Stoven , Thomas Walter , et al.
Molecular Informatics, 2017, 36 (10), ⟨10.1002/minf.201700053⟩
Article dans une revue hal-01679030v1

Design, synthesis, biological evaluation and cellular imaging of imidazo[4,5-b]pyridine derivatives as potent and selective TAM inhibitors

Tom Baladi , Jessy Aziz , Florent Dufour , Valentina Abet , Véronique Stoven , et al.
Bioorganic and Medicinal Chemistry Letters, 2018, 26 (20), pp.5510-5530. ⟨10.1016/j.bmc.2018.09.031⟩
Article dans une revue hal-03116869v1

Induction by antitumoral drugs of proteins that functionally complement CFTR: a novel therapy for cystic fibrosis?

Jean-Yves Lallemand , Véronique Stoven , Jean-Philippe Annereau , J. Boucher , Sylvain Blanquet , et al.
The Lancet, 1997, 350 (9079), pp.711-2. ⟨10.1016/S0140-6736(05)63510-6⟩
Article dans une revue istex hal-00772899v1
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Differential CFTR-Interactome Proximity Labeling Procedures Identify Enrichment in Multiple SLC Transporters

Benoît Chevalier , Nesrine Baatallah , Matthieu Najm , Solène Castanier , Vincent Jung , et al.
International Journal of Molecular Sciences, 2022, 23 (16), pp.8937. ⟨10.3390/ijms23168937⟩
Article dans une revue hal-04432947v1
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LOTUS: A single- and multitask machine learning algorithm for the prediction of cancer driver genes

Olivier Collier , Véronique Stoven , Jean-Philippe Vert
PLoS Computational Biology, 2019, 15 (9), pp.e1007381. ⟨10.1371/journal.pcbi.1007381⟩
Article dans une revue inserm-02325626v1
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LOTUS: a single-and multi-task machine-learning algorithm for the prediction of cancer driver genes

Olivier Collier , Véronique Stoven , Jean-Philippe Vert
PLoS Computational Biology, 2019
Article dans une revue hal-01857394v4

New aminopyrimidine derivatives as inhibitors of the TAM family

Ténin Traoré , Andrea Cavagnino , Nicolas Saettel , François Radvanyi , Sandrine Piguel , et al.
European Journal of Medicinal Chemistry, 2013, 70, pp.789-801. ⟨10.1016/j.ejmech.2013.10.037⟩
Article dans une revue istex hal-03116932v1

Nucleotide-binding domain 1 of cystic fibrosis transmembrane conductance regulator: Production of a suitable protein for structural studies

Francis Duffieux , Jean-Philippe Annereau , Julien Boucher , Emeric Miclet , Olivier Pamlard , et al.
European Journal of Biochemistry, 2000, 267 (17), pp.5306-5312. ⟨10.1046/j.1432-1327.2000.01614.x⟩
Article dans une revue hal-00954905v1
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Predicting drug side-effect profiles: a chemical fragment-based approach.

Edouard Pauwels , Véronique Stoven , Yoshihiro Yamanishi
BMC Bioinformatics, 2011, 12 (1), pp.169. ⟨10.1186/1471-2105-12-169⟩
Article dans une revue inserm-00663945v1

A novel model for the first nucleotide binding domain of the cystic fibrosis transmembrane conductance regulator

Joël Barthe , Gérard Lenoir , Sylvain Blanquet , Jean-Yves Lallemand , Jean-Philippe Annereau , et al.
FEBS Letters, 1997, 407 (3), pp.303-308. ⟨10.1016/s0014-5793(97)00363-3⟩
Article dans une revue hal-03116865v1

Induction by antitumoral drugs of proteins that functionally complement CFTR: a novel therapy for cystic fibrosis?

Jy Lallemand , Véronique Stoven , Jp Annereau , J Boucher , S Blanquet , et al.
The Lancet, 1997, 350 (9079), pp.711-712. ⟨10.1016/s0140-6736(05)63510-6⟩
Article dans une revue istex hal-03116899v1

The pharmacophore kernel for virtual screening with support vector machines.

Pierre Mahé , Liva Ralaivola , Véronique Stoven , Jean-Philippe Vert
Journal of Chemical Information and Modeling, 2006, 46 (5), pp.2003-14. ⟨10.1021/ci060138m⟩
Article dans une revue hal-00433580v1

Extracting Sets of Chemical Substructures and Protein Domains Governing Drug-Target Interactions

Yoshihiro Yamanishi , Edouard Pauwels , Hiroto Saigo , Véronique Stoven
Journal of Chemical Information and Modeling, 2011, 51 (5), pp.1183-1194. ⟨10.1021/ci100476q⟩
Article dans une revue hal-03116933v1
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Epigenomic Alterations in Breast Carcinoma from Primary Tumor to Locoregional Recurrences

Matahi Moarii , Alice Pinheiro , Brigitte Sigal-Zafrani , Alain Fourquet , Martial Caly , et al.
PLoS ONE, 2014, 9 (8), pp.e103986. ⟨10.1371/journal.pone.0103986⟩
Article dans une revue hal-01064211v1

Multitask feature selection with task descriptors

Victor Bellon , Véronique Stoven , Chloé-Agathe Azencott
Pacific Symposium on Biocomputing, Jan 2016, Hawai, United States. pp.261-272
Communication dans un congrès hal-01246697v1
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Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

S Sieberts , Fan Zhu , Javier García-García , Eli Stahl , Abhishek Pratap , et al.
Nature Communications, 2016, 7, pp.12460. ⟨10.1038/ncomms12460⟩
Article dans une revue hal-01420921v1

Insights into the enzymatic mechanism of 6-phosphogluconolactonase from Trypanosoma brucei using structural data and molecular dynamics simulation.

Nathalie Duclert-Savatier , Luisa Poggi , Emeric Miclet , Philippe Lopes , Jamal Ouazzani , et al.
Journal of Molecular Biology, 2009, 388 ((5)), pp.1009-21. ⟨10.1016/j.jmb.2009.03.063⟩
Article dans une revue istex hal-00648906v1

Biochemical characterization and NMR studies of the nucleotide-binding domain 1 of multidrug-resistance-associated protein 1: evidence for interaction between ATP and Trp653

Odile Ramaen , Sandrine Masscheleyn , Francis Duffieux , Olivier Pamlard , Marine Oberkampf , et al.
Biochemical Journal, 2003, 376 (3), pp.749-756. ⟨10.1042/BJ20030998⟩
Article dans une revue pasteur-02872817v1

A d(GpG)-platinated decanucleotide duplex is kinked. An extended NMR and molecular mechanics study

Frederic Herman , Jirari Kozelka , Véronique Stoven , Eric Guittet , Jean-Pierre Girault , et al.
European Journal of Biochemistry, 1990, 194 (1), pp.119-133. ⟨10.1111/j.1432-1033.1990.tb19435.x⟩
Article dans une revue hal-03116891v1

Relating drug-protein interaction network with drug side effects

S. Mizutani , E. Pauwels , Véronique Stoven , S. Goto , Y. Yamanishi
Bioinformatics, 2012, 28 (18), pp.i522-i528. ⟨10.1093/bioinformatics/bts383⟩
Article dans une revue hal-03116914v1

Evaluation of deep and shallow learning methods in chemogenomics for the prediction of drugs specificity

Benoit Playe , Véronique Stoven
Journal of Cheminformatics, 2020, 12 (1), ⟨10.1186/s13321-020-0413-0⟩
Article dans une revue hal-03116841v1

What function for human lithostathine?: structural investigations by three-dimensional structure modeling and high-resolution NMR spectroscopy

Louis Patard , Véronique Stoven , Bouchra Gharib , François Bontems , Jean-Yves Lallemand , et al.
Protein Engineering, Design and Selection, 1996, 9 (11), pp.949-957. ⟨10.1093/protein/9.11.949⟩
Article dans une revue hal-03116917v1

A Probabilistic Model for Cell Population Phenotyping Using HCS Data

Edouard Pauwels , Didier Surdez , Gautier Stoll , Aurianne Lescure , Elaine del Nery , et al.
PLoS ONE, 2012, 7 (8), pp.e42715. ⟨10.1371/journal.pone.0042715⟩
Article dans une revue hal-03116921v1