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Véronique Jorge, Research Scientist


 

Research topics

 My research activities fall under two thematic axes aiming at:

 (1) Determine the genetic architecture of complex poplar traits in order to use these genes (markers) in the selection programs developed in the unit on this model tree;

 (2) To study the diversity and genetic structure of black poplar populations.

 

Within the framework of European and national collaborative projects (EVOLTREE, Noveltree, GenTree), I have contributed significantly to the acquisition of whole genome sequence data, polymorphisms and genotyping to develop these two themes.

 Theme 1: I use association genetics and genetic mapping approaches based on the study of more or less complex pedigrees. One of the long-term objectives is to generate QTL effects information that can be used in breeding programs and serve to establish new models for genomic selection.

 Theme 2: I have been involved since 2004 in the description of the diversity and its structuring of black poplar populations at the French and European scale using molecular markers. This activity has grown with the development of high throughput sequencing and allows me to study more precisely the factors structuring the diversity of black poplar at the European scale.

 

Education and academic degrees

1996-2000         Ph. D. of Phytopathology : "Mapping of cassava (Manihot esculenta Crantz) resistance to bacterial blight caused by Xanthomonas axonopodis pv. manihotis" – University of Paris XI-Orsay (France). Working Laboratory : Biotechnology and Cassava Pathology Unit at C.I.A.T. (Centro Internacional de Agricultura Tropical), A.A. 6713, Cali, Colombia

1995-96              One year degree required before doctoral studies, equivalent to a M. Sc. "Biology, Diversity and Adaptation of Crop Plants, Option Phytopathology"- University of Paris XI

1994-95              Equivalent to a M. Sc. in Plant Biology, University of Paris XI

1990-94              Equivalent to a B. Sc. in Plant Biology, University of Paris XI

 


Journal articles26 documents

  • Marie Pégard, Vincent Segura, Facundo Muñoz, Catherine Bastien, Véronique Jorge, et al.. Favorable Conditions for Genomic Evaluation to Outperform Classical Pedigree Evaluation Highlighted by a Proof-of-Concept Study in Poplar. Frontiers in Plant Science, Frontiers, 2020, 11, ⟨10.3389/fpls.2020.581954⟩. ⟨hal-03025048⟩
  • Aurélien Chateigner, Marie-Claude Lesage-Descauses, Odile Rogier, Véronique Jorge, Jean-Charles Leplé, et al.. Gene expression predictions and networks in natural populations supports the omnigenic theory. BMC Genomics, BioMed Central, 2020, 21 (1), pp.1-16. ⟨10.1186/s12864-020-06809-2⟩. ⟨hal-02902844⟩
  • Marie Pegard, Odile Rogier, Aurélie Berard, Patricia Faivre-Rampant, Marie-Christine Le Paslier, et al.. Sequence imputation from low density single nucleotide polymorphism panel in a black poplar breeding population. BMC Genomics, BioMed Central, 2019, 20, ⟨10.1186/s12864-019-5660-y⟩. ⟨hal-02621320⟩
  • Odile Rogier, Aurélien Chateigner, Souhila Amanzougarene, Marie-Claude Lesage Descauses, Sandrine Balzergue, et al.. Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra. BMC Genomics, BioMed Central, 2018, 19, ⟨10.1186/s12864-018-5239-z⟩. ⟨hal-02622249⟩
  • Mamadou Dia Sow, Vincent Segura, Sylvain Chamaillard, Véronique Jorge, Alain Delaunay, et al.. Narrow-sense heritability and P-ST estimates of DNA methylation in three Populus nigra L. populations under contrasting water availability. Tree Genetics and Genomes, Springer Verlag, 2018, 14 (5), ⟨10.1007/s11295-018-1293-6⟩. ⟨hal-02624096⟩
  • Sara Pinosio, Stefania Giacomello, Patricia Faivre-Rampant, Gail Taylor, Véronique Jorge, et al.. Characterization of the poplar pan-genome by genome-wide identification of structural variation.. Molecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (10), pp.2706-2719. ⟨10.1093/molbev/msw161⟩. ⟨hal-02636741⟩
  • Patricia Faivre-Rampant, Giusi Zaina, Véronique Jorge, Stefania Giacomello, Vincent Segura, et al.. New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array. Molecular Ecology Resources, Wiley/Blackwell, 2016, 16 (4), pp.1023-1036. ⟨10.1111/1755-0998.12513⟩. ⟨hal-02636258⟩
  • Helene Muranty, Véronique Jorge, Catherine Bastien, Camille Lepoittevin, Laurent Bouffier, et al.. Potential for Marker-Assisted Selection for forest tree breeding: lessons from 20 years of MAS in crops. Tree Genetics and Genomes, Springer Verlag, 2014, 10 (6), pp.1491-1510. ⟨10.1007/s11295-014-0790-5⟩. ⟨hal-02635335⟩
  • Gerald Tuskan, Steve Difazio, Patricia Faivre-Rampant, Muriel Gaudet, Antoine Harfouche, et al.. The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis. Tree Genetics and Genomes, Springer Verlag, 2012, 8 (3), pp.559-571. ⟨10.1007/s11295-012-0495-6⟩. ⟨hal-01267797⟩
  • Romain Monclus, Jean-Charles Leplé, Catherine Bastien, Pierre-François Bert, Marc Villar, et al.. Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp. BMC Plant Biology, BioMed Central, 2012, 12, ⟨10.1186/1471-2229-12-173⟩. ⟨hal-02647348⟩
  • Jessy Labbé, Véronique Jorge, Annegret Kohler, Patrice Vion, Benoit Marçais, et al.. Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa. Tree Genetics and Genomes, Springer Verlag, 2011, 7 (3), pp.617-627. ⟨10.1007/s11295-010-0361-3⟩. ⟨hal-02652297⟩
  • Antje Rohde, Véronique Storme, Véronique Jorge, Muriel Gaudet, Nicola Vitacolonna, et al.. Bud set in poplar – genetic dissection of a complex trait in natural and hybrid populations. New Phytologist, Wiley, 2011, 189 (1), pp.106-121. ⟨10.1111/j.1469-8137.2010.03469.x⟩. ⟨hal-02652178⟩
  • Alois Bresson, Véronique Jorge, Arnaud Dowkiw, Vanina Guérin, Isabelle Bourgait, et al.. Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar. New Phytologist, Wiley, 2011, 192 (1), pp.151-163. ⟨10.1111/j.1469-8137.2011.03786.x⟩. ⟨hal-02652374⟩
  • Isabella Paolucci, Muriel Gaudet, Véronique Jorge, Isacco Beritognolo, Serena Terzoli, et al.. Genetic linkage maps of Populus alba L. and comparative mapping analysis of sex determination across Populus species. Tree Genetics and Genomes, Springer Verlag, 2010, 6 (6), pp.863-875. ⟨10.1007/s11295-010-0297-7⟩. ⟨hal-02663110⟩
  • Muriel Gaudet, Véronique Jorge, Isabella Paolucci, Isacco Beritognolo, Giuseppe Scarascia Mugnozza, et al.. Genetic linkage maps of Populus nigra L. including AFLPs, SSRs, SNPs, and sex trait. Tree Genetics and Genomes, Springer Verlag, 2008, 4 (1), pp.25-36. ⟨10.1007/s11295-007-0085-1⟩. ⟨hal-02660529⟩
  • Véronique Jorge, Arnaud Dowkiw, Patricia Faivre-Rampant, Catherine Bastien. Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection. New Phytologist, Wiley, 2005, 167 (1), pp.113-127. ⟨10.1111/j.1469-8137.2005.01424.x⟩. ⟨hal-02678676⟩
  • Catherine Bastien, Véronique Jorge, Arnaud Dowkiw, Marc Villar, Patricia Faivre-Rampant. Amélioration génétique des peupliers. Biofutur, Elsevier - Cachan : Lavoisier, 2004, 23 (247), pp.33-37. ⟨hal-00487112⟩
  • Catherine Bastien, Véronique Jorge, Arnaud Dowkiw, Marc Villar, Patricia Faivre-Rampant. Amélioration génétique des peupliers. Biofutur, Elsevier - Cachan : Lavoisier, 2004, 23 (247), pp.33-37. ⟨hal-02672140⟩
  • Kerstin Wydra, Valerien Zinsou, Véronique Jorge, Valérie Verdier. Identification of pathotypes of Xanthomonas axonopodis pv. manihotis in Africa and detection of quantitative trait loci and markers for resistance to bacterial blight of Cassava. Phytopathology, American Phytopathological Society, 2004, 94 (10), pp.1084-1093. ⟨hal-02677399⟩
  • James V Anderson, Michel Delseny, Martin A Fregene, Veronique Jorge, Chikelu Mba, et al.. An EST resource for cassava and other species of Euphorbiaceae.. Plant Molecular Biology, Springer Verlag (Germany), 2004, 56 (4), pp.527-39. ⟨10.1007/s11103-004-5046-6⟩. ⟨hal-00169060⟩
  • Camilo Lopez, Véronique Jorge, Benoît Piégu, Chickelu Mba, Diego Cortes, et al.. A unigene catalogue of 5700 expressed genes in cassava.. Plant Molecular Biology, Springer Verlag (Germany), 2004, 56 (4), pp.541-54. ⟨10.1007/s11103-004-0123-4⟩. ⟨hal-00168792⟩
  • Valérie Verdier, Silvia Restrepo, Gloria Mosquera, Véronique Jorge, Camilo Lopez. Recent progress in the characterization of molecular determinants in the Xanthomonas axonopodis pv. manihotis-cassava interaction.. Plant Molecular Biology, Springer Verlag (Germany), 2004, 56 (4), pp.573-84. ⟨10.1007/s11103-004-5044-8⟩. ⟨hal-00169054⟩
  • Véronique Jorge, Valérie Verdier. Qualitative and quantitative evaluation of cassava bacterial blight resistance in F1 progeny of a cross between elite cassava clones. Euphytica, 2002, 123 (1), pp.41-48. ⟨10.1023/A:1014400823817⟩. ⟨hal-02681929⟩
  • Véronique Jorge, Martin Fregene, M. Velez, Myriam C. Duque, Joe Tohme, et al.. QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassava. TAG Theoretical and Applied Genetics, Springer Verlag, 2001, 102 (4), pp.564-571. ⟨10.1007/s001220051683⟩. ⟨hal-02678591⟩
  • O. Soubabère, Véronique Jorge, Jean-Loup Notteghem, Marc-Henri Lebrun, Didier Tharreau. Sequence characterized amplified region markers for the rice blast fungus, Magnaporthe grisea. Molecular Ecology Notes, Wiley-Blackwell, 2001, 1 (1/2), pp.19-21. ⟨10.1046/j.1471-8278.2000.00008.x⟩. ⟨hal-02676586⟩
  • Véronique Jorge, Martin A. Fregene, Myriam C. Duque, Merideth W. Bonierbale, Joe Tohme, et al.. Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz). TAG Theoretical and Applied Genetics, Springer Verlag, 2000, 101 (5/6), pp.865-872. ⟨10.1007/s001220051554⟩. ⟨hal-02695548⟩

Book sections2 documents

Theses1 document

  • Véronique Jorge. Cartographie de la résistance du manioc à la bactériose vasculaire causée par Xanthomonas axonopodis pv. Manihotis. Biologie végétale. Université Paris Sud - Paris 11, 2000. Français. ⟨tel-02841765⟩

Lectures10 documents

  • Vanina Guérin, Véronique Jorge. Marqueurs moléculaires : intérêt et utilisation pour l'amélioration et la conservation de arbres forestiers. Agrosciences, Environnement, Territoires, Paysage, Forêt - Parcours Biologie Intégrative et Changement Globaux (BICG), 2019. ⟨hal-02789231⟩
  • Véronique Jorge. Genome scans (TD). Master. Agrosciences, Environnement, Territoires, Paysage, Forêt - Parcours Biologie Intégrative et Changement Globaux (BICG) (UE Génomique des populations), 2018. ⟨hal-02787572⟩
  • Véronique Jorge. Development and use of molecular markers for characterisation of Forest Genetic Resources and for Breeding : a case study, Black poplar (Populus nigra L.). Master. Advanced Studies in Environmental Interactions (DPPS-105) 2018: Engineered Plant Immunity, 2018. ⟨hal-02789398⟩
  • Véronique Jorge. Genome scans (Cours). Master. Agrosciences, Environnement, Territoires, Paysage, Forêt - Parcours Biologie Intégrative et Changement Globaux (BICG) (UE Génomique des populations), 2018. ⟨hal-02785579⟩
  • Véronique Jorge. Atelier Mesure de la diversité génétique par le phénotype. Maison Pour la Science - Action "La forêt: un écosystème fragile géré par l'homme", 2016. ⟨hal-02801280⟩
  • Véronique Jorge. Recherche de parenté chez les arbres forestiers. Maison Pour la Science (La forêt : un écosystème fragile géré par l'homme), 2015. ⟨hal-02795037⟩
  • Véronique Jorge. Déterminisme génétique de caractères complexes chez les arbres forestiers : un exemple chez les peupliers. Master. Master bioingénieur Gestion des forêts et des espaces naturels (Déterminisme génétique de caractères complexes chez les arbres forestiers : un exemple chez les peupliers), 2014. ⟨hal-02798078⟩
  • Véronique Jorge, Christine Rety. Les métiers à l'INRA. Licence. Licence Biologie, 2011. ⟨hal-02805056⟩
  • Véronique Jorge. Workshop : Comparative mapping in Salicaceae. 3rd cycle. (Workshop : Comparative mapping in Salicaceae), 2010. ⟨hal-02818186⟩
  • Véronique Jorge. La Sélection Assistée par Marqueurs: application chez le peuplier. Master. Formation Ingénieur Forestier (FIF) de l’ENGREF, 2002. ⟨hal-02831305⟩