Skip to Main content
Number of documents

39

LECLERE VALERIE


Journal articles31 documents

  • Elodie Dussert, Melissa Tourret, Barbara Deracinois, Matthieu Duban, Valérie Leclère, et al.. Fluorescent Pseudomonas strains from mid-mountain water able to release antioxidant proteins directly into water. Microbiological Research, Elsevier, 2020, 236, pp.126444. ⟨10.1016/j.micres.2020.126444⟩. ⟨hal-02930092⟩
  • Loïc Meunier, Pierre Tocquin, Luc Cornet, Damien Sirjacobs, Valérie Leclère, et al.. Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects. Bioinformatics, Oxford University Press (OUP), 2020, 36 (15), pp.4345-4347. ⟨10.1093/bioinformatics/btaa517⟩. ⟨hal-03081849⟩
  • Olumide Owolabi Omoboye, Niels Geudens, Matthieu Duban, Mickael Chevalier, Christophe Flahaut, et al.. Pseudomonas sp. COW3 Produces New Bananamide-Type Cyclic Lipopeptides with Antimicrobial Activity against Pythium myriotylum and Pyricularia oryzae. Molecules, MDPI, 2019, 24 (22), ⟨10.3390/molecules24224170⟩. ⟨hal-02623494⟩
  • Antoine Vassaux, Cedric Tarayre, Anthony Arguelles-Arias, Philippe Compère, Frank Delvigne, et al.. Astin c production by the endophytic fungus cyanodermella asteris in planktonic and immobilized culture conditions. Biotechnology Journal, Wiley-VCH Verlag, 2019, 14 (8), pp.1-11. ⟨10.1002/biot.201800624⟩. ⟨hal-02627915⟩
  • Antoine Vassaux, Loic Meunier, Micheline Vandenbol, Denis Baurain, Patrick Fickers, et al.. Nonribosomal peptides in fungal cell factories: from genome mining to optimized heterologous production. Biotechnology Advances, Elsevier, 2019, 37 (8), pp.1-23. ⟨10.1016/j.biotechadv.2019.107449⟩. ⟨hal-02570530⟩
  • Mickael Chevalier, Emma Ricart, Emeline Hanozin, Maude Pupin, Philippe Jacques, et al.. Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2019, 30 (12), pp.2608-2616. ⟨10.1007/s13361-019-02314-3⟩. ⟨hal-02417587⟩
  • Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, et al.. Norine: update of the nonribosomal peptide resource. Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gkz1000⟩. ⟨hal-02376009⟩
  • Emma Ricart, Valérie Leclère, Areski Flissi, Markus Mueller, Maude Pupin, et al.. rBAN: retro-biosynthetic analysis of nonribosomal peptides. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2019, 11 (1), pp.1-14. ⟨10.1186/s13321-019-0335-x⟩. ⟨hal-02167433⟩
  • Maude Pupin, Areski Flissi, Philippe Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. European Journal of Plant Pathology, Springer Verlag, 2018, ⟨10.1007/s10658-018-1544-2⟩. ⟨hal-01937890⟩
  • Lamia Abdellaziz, Marlène Chollet, Ahmed Abderrahmani, Max Béchet, Lamia Yaici, et al.. Lipopeptide biodiversity in antifungal Bacillus strains isolated from Algeria. Archives of Microbiology, Springer Verlag, 2018, 200 (8), pp.1205-1216. ⟨10.1007/s00203-018-1537-8⟩. ⟨hal-02620924⟩
  • Qassim Esmaeel, Lidiane Miotto, Marine Rondeau, Valérie Leclère, Christophe Clément, et al.. Paraburkholderia phytofirmans PsJN-Plants Interaction: From Perception to the Induced Mechanisms. Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.02093⟩. ⟨hal-02945059⟩
  • Qassim Esmaeel, Lidiane Miotto, Marine Rondeau, Valérie Leclère, Christophe Clément, et al.. Paraburkholderia phytofirmans PsJN-Plants Interaction: From Perception to the Induced Mechanisms. Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.02093⟩. ⟨hal-02620923⟩
  • Qassim Esmaeel, Maude Pupin, Philippe Jacques, Valérie Leclère. Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals. Environmental Science and Pollution Research, Springer Verlag, 2017, ⟨10.1007/s11356-017-9166-3⟩. ⟨hal-01548616⟩
  • Qassim Esmaeel, Maude Pupin, Nam Phuong Kieu, Gabrielle Chataigné, Max Béchet, et al.. Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis. MicrobiologyOpen, Wiley, 2016, 5 (3), pp.512 - 526. ⟨10.1002/mbo3.347⟩. ⟨hal-01398944⟩
  • Qassim Esmaeel, Mickael Chevalier, Gabrielle Chataigne, Rathinasamy Subashkumar, Philippe Jacques, et al.. Nonribosomal peptide synthetase with a unique iterative-alternative-optional mechanism catalyzes amonabactin synthesis in Aeromonas. Applied Microbiology and Biotechnology, Springer Verlag, 2016, 100 (19), pp.8453-8463. ⟨10.1007/s00253-016-7773-4⟩. ⟨hal-01601408⟩
  • Areski Flissi, Yoann Dufresne, Juraj Michalik, Laurie Tonon, Stéphane Janot, et al.. Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. Nucleic Acids Research, Oxford University Press, 2015, ⟨10.1093/nar/gkv1143⟩. ⟨hal-01235996⟩
  • Chien-Jui Huang, Ellen Pauwelyn, Marc Ongena, Delphine Debois, Valérie Leclère, et al.. Characterization of Cichopeptins, New Phytotoxic Cyclic Lipodepsipeptides Produced by Pseudomonas cichorii SF1-54 and Their Role in Bacterial Midrib Rot Disease of Lettuce. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2015, 28 (9), pp.1009-1022. ⟨10.1094/MPMI-03-15-0061-R⟩. ⟨hal-02947767⟩
  • Yoann Dufresne, Laurent Noé, Valérie Leclère, Maude Pupin. Smiles2Monomers: a link between chemical and biological structures for polymers. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2015, 7, ⟨10.1186/s13321-015-0111-5⟩. ⟨hal-01250619⟩
  • Maude Pupin, Qassim Esmaeel, Areski Flissi, Yoann Dufresne, Philippe Jacques, et al.. Norine: a powerful resource for novel nonribosomal peptide discovery. Synthetic and Systems Biotechnology, KeAi, 2015, ⟨10.1016/j.synbio.2015.11.001⟩. ⟨hal-01250614⟩
  • Jolien d'Aes, Nam Phuong Kieu, Valérie Leclère, Caroline Tokarski, Feyisara Eyiwumi Olorunleke, et al.. To settle or to move? The interplay between two classes of cyclic lipopeptides in the biocontrol strain P seudomonas CMR12a. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2014, 16 (7), pp.2282-2300. ⟨10.1111/1462-2920.12462⟩. ⟨hal-02945870⟩
  • Ammar Abdo, Valérie Leclère, Philippe Jacques, Naomie Salim, Maude Pupin. Prediction of New Bioactive Molecules using a Bayesian Belief Network. Journal of Chemical Information and Modeling, American Chemical Society, 2014, 54 (1), pp.30-36. ⟨10.1021/ci4004909⟩. ⟨hal-01090611⟩
  • Thibault Caradec, Maude Pupin, Aurélien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Smaïl-Tabbone, et al.. Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e85667. ⟨10.1371/journal.pone.0085667⟩. ⟨hal-01090619⟩
  • Ellen Pauwelyn, Chien-Jui Huang, Marc Ongena, Valérie Leclère, Philippe Jacques, et al.. New Linear Lipopeptides Produced by Pseudomonas cichorii SF1-54 Are Involved in Virulence, Swarming Motility, and Biofilm Formation. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2013, 26 (5), pp.585-598. ⟨10.1094/MPMI-11-12-0258-R⟩. ⟨hal-02945832⟩
  • Max Béchet, Joany Castéra-Guy, Jean-Sebastien Guez, Nour-Eddine Chihib, Françoise Coucheney, et al.. Production of a novel mixture of mycosubtilins by mutants of Bacillus subtilis. Bioresource Technology, Elsevier, 2013, 145, pp.264-270. ⟨10.1016/j.biortech.2013.03.123⟩. ⟨hal-02938868⟩
  • Ammar Hasan Abdo, Ségolène Caboche, Valérie Leclère, Philippe Jacques, Maude Pupin. A new fingerprint to predict nonribosomal peptides activity.. Journal of Computer-Aided Molecular Design, Springer Verlag, 2012, 26 (10), pp.1187-94. ⟨10.1007/s10822-012-9608-4⟩. ⟨hal-00750002⟩
  • Max Béchet, Thibault Caradec, Walaa Hussein, Ahmed Abderrahmani, Marlène Chollet, et al.. Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.. Applied Microbiology and Biotechnology, Springer Verlag, 2012, 95 (3), pp.593-600. ⟨10.1007/s00253-012-4181-2⟩. ⟨hal-00749819⟩
  • Ségolène Caboche, Valérie Leclère, Maude Pupin, Gregory Kucherov, Philippe Jacques. Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.. Journal of Bacteriology, American Society for Microbiology, 2010, 192 (19), pp.5143-50. ⟨10.1128/JB.00315-10⟩. ⟨hal-00641488⟩
  • François Coutte, Valérie Leclère, Max Béchet, Jean-Sebastien Guez, Didier Lecouturier, et al.. Effect of pps disruption and constitutive expression of srfA on surfactin productivity, spreading and antagonistic properties of Bacillus subtilis 168 derivatives. Journal of Applied Microbiology, Wiley, 2010, 109 (2), pp.480-491. ⟨10.1111/j.1365-2672.2010.04683.x⟩. ⟨hal-02939416⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Philippe Jacques, Gregory Kucherov. Structural pattern matching of nonribosomal peptides.. BMC Structural Biology, BioMed Central, 2009, 9 (15), ⟨10.1186/1472-6807-9-15⟩. ⟨hal-00641486⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Arnaud Fontaine, Philippe Jacques, et al.. NORINE: a database of nonribosomal peptides.. Nucleic Acids Research, Oxford University Press, 2008, Database issue, 36 (Database issue), pp.D326-31. ⟨10.1093/nar/gkm792⟩. ⟨inria-00281012⟩
  • Valérie Leclère, Max Béchet, Akram Adam, Jean-Sebastien Guez, Bernard Wathelet, et al.. Mycosubtilin Overproduction by Bacillus subtilis BBG100 Enhances the Organism's Antagonistic and Biocontrol Activities. Applied and Environmental Microbiology, American Society for Microbiology, 2005, 71, pp.4577 - 4584. ⟨10.1128/AEM.71.8.4577-4584.2005⟩. ⟨hal-02938999⟩

Conference papers5 documents

  • M. Pupin, A. Flissi, P. Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. Joint Conference of the 12. Conference of the European-Foundation-for-Plant-Pathology (EFPP) / 10. Conference of the French-Society-for-Phytopathology (SFP), May 2017, Dordrecht, France. pp.9, ⟨10.1007/s10658-018-1544-2⟩. ⟨hal-02736923⟩
  • Qassim Esmaeel, Maude Pupin, Philippe Jacques, Valérie Leclère. Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals. 3. Biennial International Congress on Natural Products and Biocontrol, Sep 2016, Perpignan, France. ⟨10.1007/s11356-017-9166-3⟩. ⟨hal-02737697⟩
  • Yoann Dufresne, Valérie Leclère, Philippe Jacques, Laurent Noé, Maude Pupin. Non Ribosomal Peptides : A monomeric puzzle. JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. pp.143-150. ⟨hal-00843827⟩
  • François Coutte, Mathias John, Max Béchet, Mirabelle Nebut, Joachim Niehren, et al.. Synthetic Engineering of Bacillus subtilis to Overproduce Lipopeptide Biosurfactants. 9th European Symposium on Biochemical Engineering Science, Sep 2012, Istanbul, Turkey. ⟨hal-00717261⟩
  • Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère. NRPS toolbox for the discovery of new nonribosomal peptides and synthetases. Journées Ouvertes en Biologie, l'Informatique et les Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. pp.89-93. ⟨hal-00734312⟩

Poster communications2 documents

  • Yoann Dufresne, Juraj Michalik, Areski Flissi, Valérie Leclère, Maude Pupin. Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. ⟨hal-01889117⟩
  • Qassim Esmaeel, Yoann Dufresne, Areski Flissi, Maude Pupin, Philippe Jacques, et al.. Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities. FEMS 2017 - 7th congress of Federation of European Microbiology societies, Jul 2017, Valencia, Spain. ⟨hal-01888999⟩

Book sections1 document

  • Valérie Leclère, Tilmann Weber, Philippe Jacques, Maude Pupin. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides. Bradley S. Evans. Nonribosomal Peptide and Polyketide Biosynthesis, 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4. ⟨10.1007/978-1-4939-3375-4_14⟩. ⟨hal-01398960⟩