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Number of documents

29

Valentina Baldazzi

Employment

 

2016- present       Researcher (CRCN), Institut Sophia Agrobiotech, INRAE, Sophia-Antipolis, France

                                   and Biocore project-team, Inria, Sophia-Antipolis, France

2010-2016            Researcher (CR2), Unit Plantes et systèmes de cultures Horticoles (PSH), INRA, Avignon, France

 

2007-2009            Post-doc, Ibis project-team, Inria, Grenoble, France

2006-2007             Post-doc, Instituto Applicazioni del Calcolo (IAC), Italian National Research Council (CNR), Rome, Italy

 

Education & Training


July 2021             HdR defence, ED SVS, section 67, University Côte d'Azur

 

2002-2005          PhD in Physics, University of Rome "Tor Vergata" and University of Strasbourg "Louis Pasteur"

 

1997-2002          M.S. in Physics, University of Rome "La Sapienza" 



 
 
 
 
 
 
 

 

Journal articles24 documents

  • Hussein Kanso, Bénédicte Quilot-Turion, Mohamed-Mahmoud Memah, Olivier Bernard, Jean-Luc Gouzé, et al.. Reducing a model of sugar metabolism in peach to catch different patterns among genotypes. Mathematical Biosciences, Elsevier, 2020, 321, pp.108321. ⟨10.1016/j.mbs.2020.108321⟩. ⟨hal-02922359⟩
  • Coffi Belmys Cakpo, Gilles Vercambre, Valentina Baldazzi, Léa Roch, Zhanwu Dai, et al.. Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species. Annals of Botany, Oxford University Press (OUP), 2020, 126 (3), pp.455-470. ⟨10.1093/aob/mcaa082⟩. ⟨hal-02749663⟩
  • Valentina Baldazzi, Pierre Valsesia, Michel Génard, Nadia Bertin. Organ-wide and ploidy-dependent regulation both contribute to cell-size determination: evidence from a computational model of tomato fruit. Journal of Experimental Botany, Oxford University Press (OUP), 2019, 70 (21), pp.6215-6228. ⟨10.1101/450916⟩. ⟨hal-02407512⟩
  • Garance Koch, Gaëlle Rolland, Myriam Dauzat, Alexis Bediée, Valentina Baldazzi, et al.. Leaf Production and Expansion: A Generalized Response to Drought Stresses from Cells to Whole Leaf Biomass—A Case Study in the Tomato Compound Leaf. Plants, MDPI, 2019, 8 (10), pp.409. ⟨10.3390/plants8100409⟩. ⟨hal-02407529⟩
  • Elsa Desnoues, Michel Génard, Bénédicte Quilot-Turion, Valentina Baldazzi. A kinetic model of sugar metabolism in peach fruit reveals a functional hypothesis of markedly low fructose-to-glucose ratio phenotype. Plant Journal, Wiley, 2018, 94 (4), pp.685-698. ⟨10.1111/tpj.13890⟩. ⟨hal-01953042⟩
  • Garance Koch, Gaelle Rolland, Myriam Dauzat, Alexis Bediee, Valentina Baldazzi, et al.. Are compound leaves more complex than simple ones? A multi-scale analysis. Annals of Botany, Oxford University Press (OUP), 2018, 122 (7), pp.1173-1185. ⟨10.1093/aob/mcy116⟩. ⟨hal-01953068⟩
  • Elsa Desnoues, Michel Génard, Bénédicte Quilot-Turion, Valentina Baldazzi. A kinetic model of sugar metabolism allows the simulation of sugar concentrations and their genetic variability during peach fruit growth. Acta Horticulturae, International Society for Horticultural Science, 2017, pp.361-366. ⟨10.17660/ActaHortic.2017.1160.52⟩. ⟨hal-01607920⟩
  • Elsa Desnoues, Michel Génard, Bénédicte Quilot-Turion, Valentina Baldazzi. A kinetic model of sugar metabolism in peach fruit allows the exploration of genetic variability. Acta Horticulturae, International Society for Horticultural Science, 2017, pp.169-176. ⟨10.17660/ActaHortic.2017.1182.20⟩. ⟨hal-01662057⟩
  • Valentina Baldazzi, Michel Génard, Nadia Bertin. Cell division, endoreduplication and expansion processes: setting the cell and organ control into an integrated model of tomato fruit development. Acta Horticulturae, International Society for Horticultural Science, 2017, 1182, pp.257 - 264. ⟨10.17660/ActaHortic.2017.1182.31⟩. ⟨hal-01661920⟩
  • Elsa Desnoues, Valentina Baldazzi, Michel Génard, Jehan-Baptiste Mauroux, Patrick Lambert, et al.. Dynamic QTLs for sugars and enzyme activities provide an overview of genetic control of sugar metabolism during peach fruit development. Journal of Experimental Botany, Oxford University Press (OUP), 2016, 67 (11), pp.3419-3431. ⟨10.1093/jxb/erw169⟩. ⟨hal-01343639⟩
  • Garance Koch, Anaëlle Dambreville, Gaelle Rolland, Myriam Dauzat, Christian Chevalier, et al.. A multi-scale pipeline for reproducible analyses of tomato leaf expansion and its plasticity. Acta Horticulturae, International Society for Horticultural Science, 2016, in press, ⟨10.17660/ActaHortic.2017.1160.15⟩. ⟨hal-01512024⟩
  • Dario Constantinescu, Mohamed Memmah, Gilles Vercambre, Michel Génard, Valentina Baldazzi, et al.. Model-Assisted Estimation of the Genetic Variability in Physiological Parameters Related to Tomato Fruit Growth under Contrasted Water Conditions. Frontiers in Plant Science, Frontiers, 2016, 7, ⟨10.3389/fpls.2016.01841⟩. ⟨hal-01475599⟩
  • Zhanwu Dai, Valentina Baldazzi, Cornelis van Leeuwen, Nadia Bertin, Hélène Gautier, et al.. Inter-species comparative analysis of components of soluble sugar concentration in fleshy fruits. Frontiers in Plant Science, Frontiers, In press, 7, 12 p. ⟨10.3389/fpls.2016.00649⟩. ⟨hal-02523722⟩
  • Mikolaj Cieslak, Ibrahim Cheddadi, Frédéric Boudon, Valentina Baldazzi, Michel Génard, et al.. Integrating Physiology and Architecture in Models of Fruit Expansion. Frontiers in Plant Science, Frontiers, 2016, 7, pp.19. ⟨10.3389/fpls.2016.01739⟩. ⟨hal-01400062⟩
  • Elsa Desnoues, Yves Gibon, Valentina Baldazzi, Veronique Signoret, Michel Génard, et al.. Profiling sugar metabolism during fruit development in a peach progeny with different fructose-to-glucose ratios.. BMC Plant Biology, BioMed Central, 2014, 14 (1), pp.336 : 1-12. ⟨10.1186/s12870-014-0336-x⟩. ⟨hal-02631892⟩
  • Michel Génard, Valentina Baldazzi, Yves Gibon. Metabolic studies in plant organs: don't forget dilution by growth. Frontiers in Plant Science, Frontiers, 2014, 5, pp.1-5. ⟨10.3389/fpls.2014.00085⟩. ⟨hal-02636620⟩
  • Valentina Baldazzi, Amélie Pinet, Gilles Vercambre, Camille Bénard, Benoit Biais, et al.. In-silico analysis of water and carbon relations under stress conditions: a multi-scale perspective centered on fruit. Frontiers in Plant Science, Frontiers, 2013, 4, ⟨10.3389/fpls.2013.00495⟩. ⟨hal-02651667⟩
  • Valentina Baldazzi, Nadia Bertin, Hidde de Jong, Michel Génard. Towards multiscale plant models: integrating cellular networks. Trends in Plant Science, Elsevier, 2012, 17 (12), pp.728-736. ⟨10.1016/j.tplants.2012.06.012⟩. ⟨hal-00762615⟩
  • Valentina Baldazzi, Delphine Ropers, Johannes Geiselmann, Daniel Kahn, Hidde de Jong. Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in Escherichia coli. Journal of Theoretical Biology, Elsevier, 2012, 295, pp.100-115. ⟨10.1016/j.jtbi.2011.11.010⟩. ⟨hal-00762570⟩
  • Delphine Ropers, Valentina Baldazzi, Hidde Jong. Model reduction using piecewise-linear approximations preserves dynamic properties of the carbon starvation response in Escherichia coli. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Institute of Electrical and Electronics Engineers, 2011, 8, pp.166-181. ⟨10.1109/TCBB.2009.49⟩. ⟨hal-00793034⟩
  • Valentina Baldazzi, Delphine Ropers, Yves Markowicz, Daniel Kahn, Johannes Geiselmann, et al.. The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes.. PLoS Computational Biology, Public Library of Science, 2010, 6 (6), pp.e1000812. ⟨10.1371/journal.pcbi.1000812⟩. ⟨inria-00527140⟩
  • Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione. Modeling lymphocyte homing and encounters in lymph nodes. BMC Bioinformatics, BioMed Central, 2009, 10 (1), pp.387. ⟨10.1186/1471-2105-10-387⟩. ⟨hal-00784447⟩
  • Valentina Baldazzi, Serena Bradde, Simona Cocco, Enzo Marinari, Remi Monasson. Inferring DNA sequences from mechanical unzipping data: the large-bandwidth case.. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, American Physical Society, 2007, 75, pp.011904. ⟨hal-00142549⟩
  • Remi Monasson, Valentina Baldazzi, Simona Cocco, Enzo Marinari. On the inference of DNA sequences from mechanical unzipping experiments. Physical Review Letters, American Physical Society, 2006, pp.96, 128102. ⟨hal-00287412⟩

Book sections4 documents

  • Valentina Baldazzi, Nadia Bertin, Michel Génard, Hélène Gautier, Elsa Desnoues, et al.. Challenges in integrating genetic control in plant and crop models. Crop Systems Biology, Editions Springer, 233 p., 2016, 978-3-319-20562-5. ⟨10.1007/978-3-319-20562-5_1⟩. ⟨hal-01271238⟩
  • Michel Génard, Mohamed-Mahmoud Memmah, Bénédicte Quilot-Turion, Gilles Vercambre, Valentina Baldazzi, et al.. Process-based simulation models are essential tools for virtual profiling and design of ideotypes: Example of fruit and root. Crop systems biology - narrowing the gaps between crop modelling and genetics, 2016, ⟨10.1007/978-3-319-20562-5_4⟩. ⟨hal-02798887⟩
  • Gilles Vercambre, Valentina Baldazzi, Nadia Bertin, Hélène Gautier, Michel Génard. Ecophysiological process-based model to simulate carbon fluxes in plants. Plant metabolic flux analysis: methods and protocols, Humana Press, 376 p., 2014, Methods in Molecular Biology, 978-1627036870. ⟨10.1007/978-1-62703-688-7_21⟩. ⟨hal-01310588⟩
  • Valentina Baldazzi, Pedro T. Monteiro, Michel Page, Delphine Ropers, Hans Geiselmann, et al.. Qualitative analysis of genetic regulatory networks in bacteria. W. Dubitzky and J. Southgate and H. Fuss. Understanding the Dynamics of Biological Systems: Lessons Learned from Integrative Systems Biology, Springer, pp.111-130, 2011, 978-1-4419-7964-3. ⟨10.1007/978-1-4419-7964-3_6⟩. ⟨hal-00793038⟩

Other publications1 document

  • Elsa Desnoues, Michel Génard, Bénédicte Quilot-Turion, Valentina Baldazzi. Explore the best sugar factory: the fruit. 2018. ⟨hal-01953091⟩