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Maximum-entropy models reveal the excitatory and inhibitory correlation structures in cortical neuronal activity

Trang-Anh Nghiem , Bartosz Teleńczuk , Olivier Marre , Alain Destexhe , Ulisse Ferrari
Physical Review E , 2018, 98 (1), pp.012402. ⟨10.1103/PhysRevE.98.012402⟩
Article dans une revue hal-02064038v1
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A simple model for low variability in neural spike trains

Ulisse Ferrari , Stéphane Deny , Olivier Marre , Thierry Mora
Neural Computation, 2018, 30 (11), pp.3009-3036. ⟨10.1162/neco_a_01125⟩
Article dans une revue hal-01990036v1
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Separating intrinsic interactions from extrinsic correlations in a network of sensory neurons

Ulisse Ferrari , Stéphane Deny , Matthew Chalk , Gašper Tkačik , Olivier Marre , et al.
Physical Review E , 2018, 98 (4), pp.042410. ⟨10.1103/PhysRevE.98.042410⟩
Article dans une revue hal-01912303v1

Context-dependent selectivity to natural scenes in the retina

Matías Goldin , Baptiste Lefebvre , Samuele Virgili , Alexander Ecker , Thierry Mora , et al.
2021
Pré-publication, Document de travail hal-03425888v1
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Towards optogenetic vision restoration with high resolution

Ulisse Ferrari , Stéphane Deny , Abhishek Sengupta , Romain Caplette , Francesco Trapani , et al.
PLoS Computational Biology, 2020, 16 (7), pp.e1007857. ⟨10.1371/journal.pcbi.1007857⟩
Article dans une revue hal-02934769v1
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Learning maximum entropy models from finite-size data sets: A fast data-driven algorithm allows sampling from the posterior distribution

Ulisse Ferrari
Physical Review E , 2016, 94 (2), pp.023301. ⟨10.1103/PhysRevE.94.023301⟩
Article dans une revue hal-01379105v1
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Predicting synchronous firing of large neural populations from sequential recordings

Oleksandr Sorochynskyi , Stéphane Deny , Olivier Marre , Ulisse Ferrari
PLoS Computational Biology, 2021, 17 (1), pp.e1008501. ⟨10.1371/journal.pcbi.1008501⟩
Article dans une revue hal-03125739v1
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Multiplexed computations in retinal ganglion cells of a single type

Stéphane Deny , Ulisse Ferrari , Emilie Macé , Pierre Yger , Romain P Caplette , et al.
Nature Communications, 2017, 8 (1), pp.1964. ⟨10.1038/s41467-017-02159-y⟩
Article dans une revue hal-01699587v1
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Planar polarity in primate cone photoreceptors: a potential role in Stiles Crawford effect phototropism

Anna Verschueren , Leyna Boucherit , Ulisse Ferrari , Stéphane Fouquet , Céline Nouvel-Jaillard , et al.
Communications Biology, 2022, 5 (1), pp.89. ⟨10.1038/s42003-021-02998-y⟩
Article dans une revue hal-03544275v1
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Time-Dependent Maximum Entropy Model for Populations of Retinal Ganglion Cells

Geoffroy Delamare , Ulisse Ferrari
MaxEnt 2022-International Conference on Bayesian and Maximum Entropy methods in Science and Engineering, Jul 2022, Paris, France. pp.31, ⟨10.3390/psf2022005031⟩
Communication dans un congrès hal-03902026v1
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Functional ultrasound imaging of the spreading activity following optogenetic stimulation of the rat visual cortex

M. Provansal , G. Labernède , C. Joffrois , A. Rizkallah , R. Goulet , et al.
Scientific Reports, 2021, 11 (1), pp.12603. ⟨10.1038/s41598-021-91972-z⟩
Article dans une revue hal-03263679v1
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Cholinergic switch between two types of slow waves in cerebral cortex

Trang-Anh E. Nghiem , Núria Tort-Colet , Tomasz Gorski , Ulisse Ferrari , Shayan Moghimyfiroozabad , et al.
Cerebral Cortex, 2020, 30 (6), pp.3451. ⟨10.1093/cercor/bhz320⟩
Article dans une revue hal-02202078v1
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Pairwise Ising Model Analysis of Human Cortical Neuron Recordings

Trang-Anh Nghiem , Olivier Marre , Alain Destexhe , Ulisse Ferrari
Frank Nielsen; Frédéric Barbaresco. Geometric Science of Information. Third International Conference, GSI 2017, Paris, France, November 7-9, 2017, Proceedings, 10589, Springer, pp.257-264, 2017, Lecture Notes in Computer Science, 978-3-319-68444-4. ⟨10.1007/978-3-319-68445-1_30⟩
Chapitre d'ouvrage hal-02064133v1
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A small-correlation expansion to quantify information in noisy sensory systems

Gabriel Mahuas , Olivier Marre , Thierry Mora , Ulisse Ferrari
Physical Review E , 2023, 108 (2), pp.024406. ⟨10.1103/PhysRevE.108.024406⟩
Article dans une revue hal-03897217v1

Small-correlation expansion to quantify information in noisy sensory systems

Gabriel Mahuas , Olivier Marre , Thierry Mora , Ulisse Ferrari
Physical Review E , 2023, 108 (2), pp.024406. ⟨10.1103/PhysRevE.108.024406⟩
Article dans une revue hal-04252227v1
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Functional ultrasound imaging of deep visual cortex in awake nonhuman primates

Kevin Blaize , Fabrice Arcizet , Marc Gesnik , Harry Ahnine , Ulisse Ferrari , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (25), pp.14453-14463. ⟨10.1073/pnas.1916787117⟩
Article dans une revue inserm-02864030v1

DnaA and the timing of chromosome replication in Es-cherichia coli as a function of growth rate

Matthew Aa Grant , Chiara Saggioro , Ulisse Ferrari , Bruno Bassetti , Bianca Sclavi , et al.
BMC Systems Biology, 2011, 5 (1), ⟨10.1186/1752-0509-5-201⟩
Article dans une revue hal-01589012v1
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ACIDES: on-line monitoring of forward genetic screens for protein engineering

Takahiro Nemoto , Tommaso Ocari , Arthur Planul , Muge Tekinsoy , Emilia A Zin , et al.
Nature Communications, 2023, 14, ⟨10.1038/s41467-023-43967-9⟩
Article dans une revue hal-04445728v1
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Closed-Loop Estimation of Retinal Network Sensitivity by Local Empirical Linearization

Ulisse Ferrari , Christophe Gardella , Olivier Marre , Thierry Mora
eNeuro, 2018, 4 (6), pp.ENEURO.0166-17.2017. ⟨10.1523/ENEURO.0166-17.2017⟩
Article dans une revue hal-01699597v1

A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons

Gabriel Mahuas , Giulio Isacchini , Olivier Marre , Ulisse Ferrari , Thierry Mora
2020
Pré-publication, Document de travail hal-03008612v1
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Context-dependent selectivity to natural images in the retina

Matías Goldin , Baptiste Lefebvre , Samuele Virgili , Mathieu Kim Pham van Cang , Alexander Ecker , et al.
Nature Communications, 2022, 13 (1), pp.5556. ⟨10.1038/s41467-022-33242-8⟩
Article dans une revue hal-03854587v1

Uncursing winner’s curse: on-line monitoring of directed evolution convergence

Takahiro Nemoto , Tommaso Ocari , Arthur Planul , Muge Tekinsoy , Emilia Zin , et al.
2023
Pré-publication, Document de travail hal-04299357v1