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Number of documents

42

Tristan Lefébure


Journal articles42 documents

  • Héloïse Verdier, Lara Konecny‐dupre, Christophe Marquette, Helen Reveron, Solène Tadier, et al.. Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers. Molecular Ecology Resources, Wiley/Blackwell, In press, ⟨10.1111/1755-0998.13604⟩. ⟨hal-03601922⟩
  • Morgane Touzot, Tristan Lefebure, Thierry Lengagne, Jean Secondi, Adeline Dumet, et al.. Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads. Science of the Total Environment, Elsevier, 2022, 818, pp.151734. ⟨10.1016/j.scitotenv.2021.151734⟩. ⟨hal-03440101⟩
  • Rosetta C Blackman, Florian Altermatt, Arnaud Foulquier, Tristan Lefébure, Maïlys Gauthier, et al.. Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment, Ecological Society of America, 2021, 19 (10), pp.574-583. ⟨10.1002/fee.2404⟩. ⟨hal-03369170⟩
  • Nathanaëlle Saclier, Patrick Chardon, Florian Malard, Lara Konecny-Dupré, David Eme, et al.. Bedrock radioactivity influences the rate and spectrum of mutation. eLife, eLife Sciences Publication, 2020, 9, pp.e56830. ⟨10.7554/eLife.56830⟩. ⟨hal-03051267⟩
  • Maïlys Gauthier, Lara Konecny-Dupré, Agnès Nguyen, Vasco Elbrecht, T. Datry, et al.. Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol. Molecular Ecology Resources, Wiley/Blackwell, 2020, 20 (79-96), pp.79-96. ⟨10.1111/1755-0998.13088⟩. ⟨hal-02328256⟩
  • Clémentine François, Laurent Simon, Florian Malard, Tristan Lefébure, Christophe Jean Douady, et al.. Trophic selectivity in aquatic isopods increases with the availability of resources. Functional Ecology, Wiley, 2020, 34, pp.1078-1090. ⟨10.1111/1365-2435.13530⟩. ⟨hal-02492518⟩
  • Florian Malard, Philippe Grison, Louis Duchemin, Lara Konecny-Dupré, Tristan Lefébure, et al.. GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research. Methods in Ecology and Evolution, Wiley, 2020, 11, pp.159-167. ⟨10.1111/2041-210X.13307⟩. ⟨hal-02329439⟩
  • Nathanaëlle Saclier, Clémentine François, Lara Konecny-Dupré, Nicolas Lartillot, Laurent Guéguen, et al.. Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Molecular Biology and Evolution, Oxford University Press (OUP), 2018, 35 (12), pp.2900-2912. ⟨10.1093/molbev/msy184⟩. ⟨hal-01951580⟩
  • Tristan Lefébure, Claire Morvan, Florian Malard, Clémentine François, Lara Konecny-Dupré, et al.. Less effective selection leads to larger genomes. Genome Research, Cold Spring Harbor Laboratory Press, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩. ⟨hal-01544879v2⟩
  • José Huguet-Tapia, Tristan Lefébure, Jonathan H Badger, Dongli Guan, Gregg S. Pettis, et al.. Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species. Applied and Environmental Microbiology, American Society for Microbiology, 2016, 82 (7), pp.2146-2153. ⟨10.1128/AEM.03504-15⟩. ⟨hal-01329447⟩
  • Clémentine François, L. Duret, Laurent Simon, Florian Mermillod-Blondin, Florian Malard, et al.. No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes. Molecular Biology and Evolution, Oxford University Press (OUP), 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩. ⟨hal-01370129⟩
  • Vincent P. Richards, Tristan Lefébure, Paulina Pavinski Bitar, Belgin Dogan, Kenneth Simpson, et al.. Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. . PLoS ONE, Public Library of Science, 2015, 10 (3, e0119799), pp.1-11. ⟨10.1371/journal.pone.0119799⟩. ⟨hal-01292456⟩
  • Belgin Dogan, Haruo Suzuki, Deepali Herlekar, Balfour Sartor, Barry J Campbell, et al.. Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of Propanediol and Iron and M-cell translocation. Inflammatory Bowel Diseases, Lippincott, Williams & Wilkins, 2014, 20 (2), pp.1919-1932. ⟨10.1097/MIB.0000000000000183⟩. ⟨hal-01332099⟩
  • Christian Griebler, Florian Malard, Tristan Lefébure. Current developments in groundwater ecology -- from biodiversity to ecosystem function and services. Current Opinion in Biotechnology, Elsevier, 2014, 27, pp.159-167. ⟨10.1016/j.copbio.2014.01.018⟩. ⟨halsde-00958792⟩
  • Changyou Lin, C. den Bakker Henk, Haruo Suzuki, Tristan Lefébure, Lalit Ponnala, et al.. Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78T.. Genome Announcements, American Society for Microbiology, 2013, 1 (1, e00215-12), pp.1-2. ⟨10.1128/genomeA.00215-12⟩. ⟨halsde-00804898⟩
  • David Eme, Florian Malard, Lara Konecny-Dupré, Tristan Lefébure, Christophe Jean Douady. Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology, Wiley, 2013, 22, pp.5685-5699. ⟨10.1111/mec.12520⟩. ⟨halsde-00921300⟩
  • Cécile Capderrey, Bernard Kaufmann, Pauline Jean, Florian Malard, Lara Konecny-Dupré, et al.. Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri. PLoS ONE, Public Library of Science, 2013, 8 - e76213 (9), pp.1-10. ⟨10.1371/journal.pone.0076213⟩. ⟨halsde-00876955⟩
  • E. Cornejo Omar, Tristan Lefébure, Paulina Pavinski Bitar, Ping Lang, Vincent P. Richards, et al.. Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans. Molecular Biology and Evolution, Oxford University Press (OUP), 2013, 30 (4), pp.881-93. ⟨10.1093/molbev/mss278⟩. ⟨halsde-00814175⟩
  • R. Palmer Sara, H. Miller James, Jacqueline Abranches, Lin Zeng, Tristan Lefébure, et al.. Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans. PLoS ONE, Public Library of Science, 2013, 8 - e61358 (4), pp.1-17. ⟨10.1371/journal.pone.0061358⟩. ⟨halsde-00837811⟩
  • P. Richards Vincent, Tristan Lefébure, Paulina Pavinski Bitar, Michael J Stanhope. Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection. Genetics and Evolution, 2013, 14, pp.200-213. ⟨10.1016/j.meegid.2012.12.010⟩. ⟨halsde-00787604⟩
  • Claire Morvan, Florian Malard, Emmanuel Paradis, Tristan Lefébure, Lara Konecny-Dupré, et al.. Timetree of aselloidea reveals species diversification dynamics in groundwater. Systematic Biology, Oxford University Press (OUP), 2013, 62 (4), pp.512-22. ⟨10.1093/sysbio/syt015⟩. ⟨halsde-00837844⟩
  • A. Bell, J., J.P. Jerome, A.E. Plovanich-Jones, E.J. Smith, J.R. Gettings, et al.. Outcome of infection of C57BL/6 IL-10 mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated invivo. Microbial Pathogenesis, Elsevier, 2013, 54, pp.1-19. ⟨10.1016/j.micpath.2012.08.001⟩. ⟨halsde-00786264⟩
  • Haruo Suzuki, Tristan Lefébure, Paulina Pavinski Bitar, J. Stanhope Michael. Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. BMC Genomics, BioMed Central, 2012, 13 (38), pp.1-8. ⟨10.1186/1471-2164-13-38⟩. ⟨halsde-00685689⟩
  • R.A. Burne, L. Zeng,, S.J. Ahn, S.R. Palmer, Yehan Liu, et al.. Progress dissecting the oral microbiome in caries and health. Advances in dental research, 2012, 24 (2), pp.77-80. ⟨10.1177/0022034512449462⟩. ⟨halsde-00734401⟩
  • Tristan Lefébure, P. Richards Vince, Ping Lang, Paulina Pavinski Bitar, J. Stanhope Michael. Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. PLoS ONE, Public Library of Science, 2012, 7 (5), pp.1-11. ⟨10.1371/journal.pone.0037607⟩. ⟨halsde-00705729⟩
  • Vincent P Richards, Ruth N. Zadoks, Paulina D Pavinski Bitar, Tristan Lefébure, Ping Lang, et al.. Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. BMC Microbiology, BioMed Central, 2012, 12 (293), pp.1-16. ⟨10.1186/1471-2180-12-293⟩. ⟨halsde-00786423⟩
  • P. Richards Vincent, Ping Lang, D. Bitar Paulina, Tristan Lefébure, Ynte H. Schukken, et al.. Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae. Infection, Genetics and Evolution, Elsevier, 2011, 11 (6), pp.1263-75. ⟨10.1016/j.meegid.2011.04.019⟩. ⟨halsde-00623049⟩
  • Haruo Suzuki, Tristan Lefébure, Melissa Jane Hubisz, Paulina Pavinski Bitar, Ping Lang, et al.. Comparative genomic analysis of the streptococcus dysgalactiae species group : Gene content, molecular adaptation, and promoter evolution. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2011, 3, pp.168-185. ⟨10.1093/gbe/evr006⟩. ⟨halsde-00579903⟩
  • Ping Lang, Tristan Lefébure, Wei Wang, Paulina Pavinski Bitar, Richard J. Meinersmann, et al.. Expanded Multilocus Sequence Typing and Comparative Genomic Hybridization of Campylobacter coli Isolates from Multiple Hosts. Applied and Environmental Microbiology, American Society for Microbiology, 2010, 76 (6), pp.1913-1925. ⟨10.1128/aem.01753-09⟩. ⟨halsde-00958684⟩
  • Tristan Lefébure, Paulina Pavinski Bitar, Haruo Suzuki, Michael J Stanhope. Evolutionary Dynamics of Complete Campylobacter Pan-Genomes and the Bacterial Species Concept. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2010, 2, pp.646-655. ⟨10.1093/gbe/evq048⟩. ⟨halsde-00958687⟩
  • T. Lefébure, M. Stanhope. Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter. Genome Research, Cold Spring Harbor Laboratory Press, 2009, 19 (7), pp.1224-1232. ⟨10.1101/gr.089250.108⟩. ⟨hal-03034739⟩
  • Marie-José Dole-Olivier, Florian Malard, Dominique P. Martin, Tristan Lefébure, Janine Gibert. Relationships between environmental variables and groundwater biodiversity at the regional scale. In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver). Freshwater Biology, Wiley, 2009, 54, pp.797-813. ⟨10.1111/j.1365-2427.2009.02184.x⟩. ⟨halsde-00370421⟩
  • Ping Lang, Tristan Lefébure, W. Wang, Ruth N. Zadoks, Ynte Schukken, et al.. Gene content differences across strains of Streptococcus uberis identified using oligonucleotide microarray comparative genomic hybridization. Infection, Genetics and Evolution, Elsevier, 2009, 9 (2), pp.179-188. ⟨10.1016/j.meegid.2008.10.015⟩. ⟨hal-03034836⟩
  • Peter Trontelj, Christophe Jean Douady, Cene Fiser, Janine Gibert, Spela Goricki, et al.. A molecular test for cryptic diversity in ground water : how large are the ranges of macro-stygobionts ? In: Freshwater Biology Special Issue, Assessing and Conserving Groundwater Biodiversity (Eds. J. Gibert & D.C. Culver). Freshwater Biology, Wiley, 2009, 54, pp.727-744. ⟨10.1111/j.1365-2427.2007.01877.x⟩. ⟨halsde-00378197⟩
  • Michael Stanhope, Tristan Lefébure, Stacey Walsh, Julie Becker, Ping Lang, et al.. Positive selection in penicillin-binding proteins 1a, 2b, and 2x from Streptococcus pneumoniae and its correlation with amoxicillin resistance development. Infection, Genetics and Evolution, Elsevier, 2008, 8 (3), pp.331-339. ⟨10.1016/j.meegid.2008.02.001⟩. ⟨hal-03034737⟩
  • Arnaud Foulquier, Florian Malard, Tristan Lefébure, Christophe Jean Douady, Janine Gibert. The imprint of quaternary glaciers on the present-day distribution of the obligate groundwater amphipod Niphargus virei (Niphargidae). Journal of Biogeography, Wiley, 2008, 35, pp.552-564. ⟨10.1111/j.1365-2699.2007.01795.x⟩. ⟨halsde-00264658⟩
  • Michael Stanhope, Stacey Walsh, Tristan Lefébure, Ping Lang, Paulina Bitar, et al.. The relative frequency of intraspecific lateral gene transfer of penicillin binding proteins 1a, 2b, and 2x, in amoxicillin resistant Streptococcus pneumoniae. Infection, Genetics and Evolution, Elsevier, 2007, 7 (4), pp.520-534. ⟨10.1016/j.meegid.2007.03.004⟩. ⟨hal-03034686⟩
  • T. Lefébure, Christophe Jean Douady, Florian Malard, Janine Gibert. Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis).. Molecular Phylogenetics and Evolution, Elsevier, 2007, 42 (3), pp.676-686. ⟨10.1016/j.ympev.2006.08.020⟩. ⟨halsde-00157625⟩
  • Tristan Lefébure, Michael J Stanhope. Evolution of the core and pan-genome of Streptococcus: positive selection, recombination, and genome composition. Genome Biology, BioMed Central, 2007, 8 (5), pp.R71. ⟨10.1186/gb-2007-8-5-r71⟩. ⟨hal-03034694⟩
  • T. Lefébure, C.J. Douady, Manolo Gouy, J. Gibert. Relationship between morphological taxonomy and molecular divergence within Crustacea : Proposal of a molecular threshold to help species delimitation. Molecular Phylogenetics and Evolution, Elsevier, 2006, 40 (2), pp.435-447. ⟨10.1016/j.ympev.2006.03.014⟩. ⟨hal-00427988⟩
  • Christophe Jean Douady, Florian Malard, T. Lefébure, Julien Issartel, J. Azzarotto, et al.. De l'influence des glaciations du Quaternaire sur les crustacés aquatiques souterains.. Nature et Patrimoine en Pays de Savoie, 2006, 18 (3), pp.26-29. ⟨halsde-00157681⟩
  • T. Lefébure, C.J. Douady, Manolo Gouy, P. Trontel, J. Briolay, et al.. Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology, Wiley, 2006, 15, pp.1797-1806. ⟨10.1111/j.1365-294X.2006.02888.x⟩. ⟨hal-00427985⟩