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Researcher identifiers

Number of documents

74

CV from Timothée Flutre


researcher at INRAE, UMR GQE - Le Moulon, team DEAP

personal webpage

 


Journal articles20 documents

  • Benedikt Haug, Monika Messmer, Jérôme Enjalbert, Isabelle Goldringer, Emma Forst, et al.. Advances in breeding for mixed cropping – incomplete factorials and the producer/associate concept. Frontiers in Plant Science, Frontiers, 2021, 11, ⟨10.3389/fpls.2020.620400⟩. ⟨hal-03317725⟩
  • Charlotte Brault, Agnes Doligez, Loïc Le Cunff, Aude Coupel-Ledru, Thierry Simonneau, et al.. Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine. G3 Genes|Genomes|Genetics, 2021, 11 (9), pp.jkab248. ⟨10.1093/g3journal/jkab248⟩. ⟨hal-03342409⟩
  • Cathy Bouffartigue, Sandrine Debille, Olivier Fabreguettes, Ana Ramos Cabrer, Santiago Pereira-Lorenzo, et al.. Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France. Annals of Forest Science, Springer Nature (since 2011)/EDP Science (until 2010), 2020, 77 (3), pp.74. ⟨10.1007/s13595-020-00982-w⟩. ⟨hal-02924577⟩
  • Mariem Nsibi, Barbara Gouble, Sylvie Bureau, Timothée Flutre, Christopher Sauvage, et al.. Adoption and Optimization of Genomic Selection To Sustain Breeding for Apricot Fruit Quality. G3, Genetics Society of America, 2020, 10 (12), pp.4513-4529. ⟨10.1534/g3.120.401452⟩. ⟨hal-03057805⟩
  • Hélène Badouin, Amandine Velt, François Gindraud, Timothée Flutre, Vincent Dumas, et al.. The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication. Genome Biology, BioMed Central, 2020, 21 (1), pp.223. ⟨10.1186/s13059-020-02131-y⟩. ⟨hal-02946414⟩
  • Timothée Flutre, Julien Diot, Jacques David. PlantBreedGame : a serious game that puts students in the breeder’s seat. Crop Science, Crop Science Society of America, 2019, 59, pp.1-2. ⟨10.2135/cropsci2019.03.0183le⟩. ⟨hal-02164159⟩
  • Javier Tello, Catherine Roux, Hajar Chouiki Alilou, Valerie Laucou, Gautier Sarah, et al.. A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population. TAG Theoretical and Applied Genetics, Springer Verlag, 2019, ⟨10.1007/s00122-019-03351-y⟩. ⟨hal-02628952⟩
  • Cédric Moisy, Gilles Berger, Timothée Flutre, Loïc Le Cunff, Jean-Pierre Peros. Quantitative assessment of grapevine wood colonization by the dieback fungus Eutypa lata. Journal of Fungi, MDPI, 2017, 3 (2), 15 p. ⟨10.3390/jof3020021⟩. ⟨hal-01527690⟩
  • Maud Fagny, Etienne Patin, Maxime Rotival, Julia L. Macisaac, Timothée Flutre, et al.. The epigenomic landscape of African rainforest hunter-gatherers and farmers. Nature Communications, Nature Publishing Group, 2015, 6, 11 p. ⟨10.1038/ncomms10047⟩. ⟨pasteur-01238387⟩
  • Timothée Flutre. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science, American Association for the Advancement of Science, 2015, 348 (6235), pp.648-660. ⟨10.1126/science.1262110⟩. ⟨hal-01157916⟩
  • Berta Andújar, Gerard Campderrós, María García, Macarena Marino, Marta Mas, et al.. Twenty Tips for High-School Students Engaging in Research with Scientists. Frontiers for Young Minds, Frontiers Media, 2015, 3, 7 p. ⟨10.3389/frym.2015.00007⟩. ⟨hal-01235876⟩
  • Timothée Flutre, Xiaoquan Wen, Jonathan Pritchard, Matthew Stephens. A statistical framework for joint eQTL analysis in multiple tissues. PLoS Genetics, Public Library of Science, 2013, 9 (5), ⟨10.1371/journal.pgen.1003486⟩. ⟨hal-01190566⟩
  • John Lonsdale, Emile Thomas, Mike Salvatore, Phillip Phillips, Edmund Lo, et al.. The Genotype-Tissue Expression (GTEx) project. Nature Genetics, Nature Publishing Group, 2013, 45 (6), pp.580 - 585. ⟨10.1038/ng.2653⟩. ⟨hal-01374823⟩
  • Laure Segurel, Emma E. Thompson, Timothée Flutre, Jessica Lovstad, Aarti Venkat, et al.. The ABO blood group is a trans-species polymorphism in primates. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2012, 109 (45), pp.18493 - 18498. ⟨10.1073/pnas.1210603109⟩. ⟨hal-00956369⟩
  • Philippe Leroy, Nicolas Guilhot, Hiroaki Sakai, Aurélien Bernard, Frédéric Choulet, et al.. TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.. Frontiers in Plant Science, Frontiers, 2012, 3, pp.5. ⟨10.3389/fpls.2012.00005⟩. ⟨hal-00753407⟩
  • Timothée Flutre, Emmanuelle Permal, Hadi Quesneville. In search of lost trajectories: recovering the diversification of transposable elements. Mobile Genetic Elements, Taylor & Francis, 2011, 1 (2), pp.151-154. ⟨10.4161/mge.1.2.17094⟩. ⟨hal-00956371⟩
  • Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville. Considering transposable element diversification in de novo annotation approaches. PLoS ONE, Public Library of Science, 2011, 6 (1), pp.1-15. ⟨10.1371/journal.pone.0016526⟩. ⟨hal-00956366⟩
  • Timothée Flutre, Thomas Julou, Livio Riboli-Sasco, Claire Ribrault. Research community: Pilot scheme for misconduct database. Nature, Nature Publishing Group, 2011, 478 (37), ⟨10.1038/478037c⟩. ⟨hal-02642815⟩
  • E. d'Alençon, H. Sezutsu, Fabrice Legeai, E. Permal, S. Bernard-Samain, et al.. Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2010, 107 (17), pp.7680-5. ⟨10.1073/pnas.0910413107⟩. ⟨inria-00537908⟩
  • Pierre Abad, Jerome Gouzy, Jean-Marc Aury, Philippe Castagnone, Etienne Danchin, et al.. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology, Nature Publishing Group, 2008, 26 (8), pp.909-915. ⟨10.1038/nbt.1482⟩. ⟨hal-01189285⟩

Conference papers27 documents

  • Adrien Belny, Martin Ecarnot, Timothée Flutre. Estimation des proportions variétales de grains de blé par SPIR et imagerie hyperspectrale. HelioSpir, Jun 2021, Montpellier, France. ⟨hal-03317724⟩
  • Charles Romieu, Antoine Bigard, Matthieu Breil, Rezk Shahood, Stefania Savoi, et al.. New physiological and genetic approaches to breed grapevines challenging climate warming. 12. Congress of the international plant molecular biology, Aug 2018, Montpellier, France. ⟨hal-01857673⟩
  • Agnes Doligez, Yves Bertrand, Pilar Gago, Michel Grolier, Gilles Berger, et al.. Twelve new QTLs for phenological traits in Vitis vinifera L.. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Montpellier, France. ⟨hal-01857674⟩
  • Elisabeth Dirlewanger, Loïck Le Dantec, Teresa Barreneche, Bénédicte Wenden, Timothée Flutre, et al.. New sweet cherry genomic tools and their use in marker-assisted breeding. XXX. International Horticultural Congress, ISHS, Aug 2018, Istanbul, Turkey. ⟨hal-02877345⟩
  • Javier Tello Moro, Catherine Roux, Valerie Laucou, Gautier Sarah, Luc Bidel, et al.. Integrating novel genotyping and phenotyping technologies for grape genetics. International Congress on Grapevine and Wine Sciences. International Congress on Grapevine and Wine Sciences, Nov 2018, Logrono, Spain. 242 p. ⟨hal-02736417⟩
  • Timothée Flutre, Amandine Launay, Agnes Doligez, Eric Duchêne, Elisa Marguerit, et al.. Combining genotyping by sequencing and genomic prediction within bi-parental crosses to speed up selection of grapevine cultivars. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ⟨hal-01848564⟩
  • Véronique Decroocq, Stephane Decroocq, David Tricon, Timothée Flutre, Thierry Pascal, et al.. Resistance to sharka in Stone Fruit trees : Genetic and genomic technologies for new breeding strategies. 9. International Rosaceae Genomics Conference, Jun 2018, Nanjing, China. ⟨hal-01819033⟩
  • Cyril Pommier, Eric Duchêne, Thierry Lacombe, Timothée Flutre, Michael Alaux, et al.. Developing grapevine FAIR Data. PAG Conference 2018, Jan 2018, San Diego, United States. ⟨hal-02738117⟩
  • Javier Tello Moro, Catherine Roux, Valerie Laucou, Gautier Sarah, Timothée Flutre, et al.. A novel high-density grapevine integrated linkage map using GBS in a multi-parental population: preliminary results. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ⟨hal-01857671⟩
  • Viviana Rodriguez Cano, Thierry Lacombe, Cécile Marchal, Sabine Merdinoglu-Wiedemann, O. Yobrégat, et al.. VITIRAMA: A program to characterize disease susceptibility in French ampelographic collections. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ⟨hal-01868812⟩
  • Mariem Nsibi, Carole Confolent, Barbara Gouble, Sylvie Bureau, Alain Blanc, et al.. Genomic selection - which prospects in Prunus armeniaca? Preliminary results issued from fruit quality traits and phenology. 9. International Rosaceae Genomics Conference, Jun 2018, Nanjing, China. ⟨hal-01830311⟩
  • Timothée Flutre, Roberto Bacilieri, Gilles Berger, Yves Bertrand, Jean-Michel Boursiquot, et al.. Genome-wide association study of a diverse grapevine panel to uncover the genetic architecture of numerous traits of interest. 12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France. ⟨hal-02734488⟩
  • Charlotte Brault, Marie Perrot-Dockès, Agnes Doligez, Julien Chiquet, Loic Le Cunff, et al.. Multivariate statistical modelling for QTL detection and marker selection in a bi-parental grapevine population. 17. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, Sep 2018, Gand, Belgium. ⟨hal-01868802⟩
  • Cathy Bouffartigue, Timothée Flutre, Nathalie Couix, Teresa Barreneche, Luc Harvengt, et al.. Conservation and usage of chestnut diversity : a case study of partnership research. Solibam final congress - Diversity strategies for organic and low input agricultures and their food systems, 2018, Rennes, France. ⟨hal-02733777⟩
  • Elisabeth Dirlewanger, Loïck Le Dantec, Mathieu Fouché, N Zaracho Echagüe, J. A. Campoy, et al.. New sweet cherry genomic tools and their use in marker-assisted breeding. XXX. International Horticultural Congress, ISHS, Aug 2018, Istanbul, Turkey. pp.533 - 542, ⟨10.17660/actahortic.2020.1297.70⟩. ⟨hal-03356206⟩
  • Cathy Bouffartigue, Nathalie Couix, Timothée Flutre, Teresa Barreneche, Laurent Hazard. Conservation and usage of chestnut biodiversity: a case study of partnership research. Diversifood Final Congress ‘Cultivating Diversity and Food Quality’, Dec 2018, Rennes, France. 105 p. ⟨hal-02733705⟩
  • Timothée Flutre, Amandine Launay, Caroline Denance, Helene Muranty, Jean Marc Audergon, et al.. Evaluer la sélection génomique au sein de croisements bi-parentaux d’espèces pérennes fruitières génotypés par séquençage : point d’étape du projet FruitSelGen. Séminaire SelGen 2017 : "La sélection génomique, bilan et perspectives", Sep 2017, Paris, France. pp.1. ⟨hal-01819030⟩
  • Agnes Doligez, Loic Le Cunff, Timothée Flutre, Amandine Launay, Stephane Nicolas, et al.. Towards genome-wide association studies under abiotic stress in Vitis vinifera. Genetic resources section meeting of Eucarpia, May 2017, Montpellier, France. ⟨hal-01603111⟩
  • Timothée Flutre. Croisement Syrah x Grenache: générateur de diversité entre recherche et application. Journée d’information et d’échanges sur la création de variétés résistantes organisée par l’Institut Rhodanien, Mar 2016, Orange, France. pp.19. ⟨hal-01291707⟩
  • Lucie Pinasseau, Agnes Doligez, Angelique Adiveze, Agnès Ageorges, Dalel Ahmed, et al.. Screening germplasm for adaptation to drought and temperature. Innovine, innovation in vineyard, 2016, Toulouse, France. 2 p. ⟨hal-02798435⟩
  • Agnes Destrac-Irvine, Timothée Flutre, Christel Renaud, Elena Morin, Louise Durand, et al.. Phenotyping berries from the grapevine Vitis vinifera L. by means of Fourier transform infrared spectroscopy. OENO Symposium, Jun 2015, Bordeaux, France. ⟨hal-03041049⟩
  • Agnes Destrac, Timothée Flutre, Christel Renaud, Elena Morin, Louise Durand, et al.. The use of Fourier transform infrared spectroscopy in phenotyping berries from the grapevine Vitis Vinifera L.. 19. Journées Internationales de Viticulture GiESCO, May 2015, Gruissan, France. 810 p. ⟨hal-01269230⟩
  • Cedric Moisy, Timothée Flutre, Amandine Michon, Khadidiatou Fall, Gilles Berger, et al.. Recherche de zones du génome impliquées dans la tolérance et/ou la résistance aux prinipaux pathogènes des maladies du bois au sein des variétés de vigne cultivées. Journées Maladies du bois de la Vigne de l’Institut Français de la Vigne, Nov 2015, COLMAR, France. ⟨hal-02742085⟩
  • Timothée Flutre. Projet EDGARR de sélection génomique chez la vigne pour la filière rosé. Séminaire du projet R2D2, Nov 2015, Le Teich, France. 34 p. ⟨hal-01235879⟩
  • Timothée Flutre, Xiaoquan Wen, Jonathan Pritchard, Matthew Stephens. Statistical inference of tissue-consistent and tissue-specific eQTLs. 62. Annual Meeting of the American Society of Human Genetics, Nov 2012, San Francisco, United States. ⟨hal-01190089⟩
  • Joelle Amselem, Timothée Flutre, Victoria Fabia Dominguez del Angel, Jonathan Kreplak, Sébastien Duplessis, et al.. Fungal genome analysis of transposable elements: expansion vs RIP silencing. Plant and Animal Genome: 19. Conference, Jan 2011, San Diego, United States. n.p. ⟨hal-00956370⟩
  • Timothée Flutre. REPET, pipelines for the detection and annotation of transposable elements in genomic sequences. 19. International Triticeae Mapping Initiative - 3rd COST Tritigen, Aug 2009, Clermont-Ferrand, France. ⟨hal-02821787⟩

Poster communications6 documents

  • Meije Gawinowski, Jérôme Enjalbert, Paul-Henry Cournède, Timothée Flutre. WHEAMM: a functional-structural model to study plant growth and interactions with neighbors in wheat variety mixtures. FSPM 2020 : 9th International Conference on FUNCTIONAL-STRUCTURAL PLANT MODELS, Oct 2020, Hanovre (Virtual Conference), Germany. ⟨hal-02961398⟩
  • Charlotte Brault, Agnes Doligez, Julien Chiquet, Loic Le Cunff, Patrice This, et al.. Comparison of univariate and multivariate models for marker selection and genomic prediction . The 6th International Conference of Quantitative Genetics, Nov 2020, Brisbane, Australia. ⟨hal-02972998⟩
  • Mariem N'Sibi, Carole Confolent, Patrick Lambert, Sylvie Bureau, Barbara Gouble, et al.. Sélection génomique - Quelles perspectives chez les Prunus ?. Séminaire SelGen 2017 : "La sélection génomique, bilan et perspectives", Sep 2017, Paris, France. 1 p, 2017. ⟨hal-02789979⟩
  • Agnes Doligez, Loic Le Cunff, Timothée Flutre, Amandine Launay, Stephane Nicolas, et al.. Towards genome-wide association studies under abiotic stress in Vitis vinifera. ClimWine 2016 (Sustainable grape and wine production in the context of climate change), Apr 2016, Bordeaux, France. 152 p., 2016, Sustainable grape and wine production in the context of climate change. ⟨hal-02742772⟩
  • Timothée Flutre, Xiaoquan Wen, Jonathan Pritchard, Matthew Stephens. Statistical inference of eQTL sharing among many tissues. 63rd Annual Meeting of the American Society of Human Genetic, Oct 2013, Boston, United States. 2013. ⟨hal-01268700⟩
  • Veronique Jamilloux, Olivier Inizan, Sandie Arnoux, Timothée Flutre, Claire Hoede, et al.. Use cases and improvements of REPET package : pipeline and tools to identify and annotate TEs in genomic sequences. 17. Congrès National des Elements Transposables, Jul 2011, Lyon, France. 2011. ⟨hal-01190364⟩

Book sections2 documents

Reports1 document

  • Timothée Flutre. Réflexions sur la partie V du rapport du BAP sur l'agroécologie. [Autre] 2016, pp.12. ⟨hal-02792408⟩

Theses2 documents

  • Timothée Flutre. L'annotation des éléments transposables par la compréhension de leur diversification. Sciences du Vivant [q-bio]. Université Paris-Diderot - Paris VII, 2010. Français. ⟨tel-00560242⟩
  • Timothée Flutre. L'annotation des éléments transposables par la compréhension de leur diversification. Sciences du Vivant [q-bio]. Université Paris Diderot - Paris 7, 2010. Français. ⟨tel-02824845⟩

Lectures14 documents

  • Timothée Flutre. A quantitative geneticist’ journey from grapevine vineyards to wheat mixtures. Doctoral. CiBreed Seminar Series, Germany. 2021. ⟨hal-03125471⟩
  • Germain Montazeaud, Timothée Flutre. Interactions plante-plante : Bases éco-évolutives et génétique d'association. Master. France. 2020. ⟨hal-03172150⟩
  • Emma Forst, Timothée Flutre. Modèles de sélection des aptitudes au mélange. Master. Sélection pour la diversification intra-parcelle, France. 2020. ⟨hal-03172130⟩
  • Jérôme Enjalbert, Emmanuelle Blanc, Timothée Flutre. Modèles dynamiques des interactions plantes x plantes. Master. Sélection pour la diversification intra-parcelle, France. 2020. ⟨hal-03172205⟩
  • Timothée Flutre. Introduction à la sélection. Master. Amélioration des plantes et ingénierie végétale méditerranéennes et tropicales (Atelier de prédiction et sélection génomique), 2018. ⟨hal-02787828⟩
  • Timothée Flutre. Qu'est-ce que la modélisation statistique ? Une tentative de réponse. Licence. LabScience, 2017. ⟨hal-02790022⟩
  • Timothée Flutre. Pathogènes de la vigne et choix du matériel végétal: prévention et création variétale. Cursus ingénieur (Module "diagnostic agronomique"), 2016. ⟨hal-02798135⟩
  • Timothée Flutre. Premiers pas de modélisation statistique par simulation avec la régression linéaire simple. Master. Amélioration des plantes et ingénierie végétale méditerranéennes et tropicales (Atelier de prédiction et sélection génomique), 2016. ⟨hal-02798157⟩
  • Timothée Flutre, Marie Denis. model4all: une initiative collaborative pour la modélisation statistique. Master. 2016. ⟨hal-02795664⟩
  • Timothée Flutre. Bref état des lieux de la gestion des données au sein de la communauté "vigne". 2016. ⟨hal-02792961⟩
  • Timothée Flutre. Prédiction génomique. Master. Amélioration des plantes et ingénierie végétale méditerranéennes et tropicales (Atelier de prédiction et sélection génomique), 2016. ⟨hal-02793019⟩
  • Timothée Flutre. Tutorial on (un)compressing files. 2015. ⟨hal-02792210⟩
  • Timothée Flutre. Tutoriel sur les tests multiples (et au-delà). 2015. ⟨hal-02792527⟩
  • Timothée Flutre. Caring about reproducibility in scientific research. 2014. ⟨hal-02795975⟩

Software2 documents

  • Timothée Flutre, Xiaoquan Wen. eQtlBma. 2012. ⟨hal-02805097⟩
  • Hadi Quesneville, Timothée Flutre, Olivier Inizan, Claire Hoede, Elodie Duprat, et al.. REPET. 2010. ⟨hal-02820937⟩