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Thomas Schiex

18

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50372

	Iterated local search with partition crossover for computational protein design François Beuvin , Simon De Givry , Thomas Schiex , Sébastien Verel , David Simoncini Proteins - Structure, Function and Bioinformatics, 2021, 89 (11), pp.1522-1529. ⟨10.1002/prot.26174⟩ Article dans une revue hal-03298736v1
	A Comparative Study to Decipher the Structural and Dynamics Determinants Underlying the Activity and Thermal Stability of GH-11 Xylanases Jelena Vucinic , Gleb Novikov , Cédric Montanier , Claire Dumon , Thomas Schiex International Journal of Molecular Sciences, 2021, 22 (11), ⟨10.3390/ijms22115961⟩ Article dans une revue hal-03244138v1
	Molecular flexibility in computational protein design: an algorithmic perspective Younes Bouchiba , Juan Cortés , Thomas Schiex , Sophie Barbe Protein Engineering, Design and Selection, 2021, 34, pp.gzab011. ⟨10.1093/protein/gzab011⟩ Article dans une revue hal-03221838v1
	Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase Sota Yagi , Aditya K Padhi , Jelena Vucinic , Sophie Barbe , Thomas Schiex Journal of the American Chemical Society, In press, 143 (39), pp.15998-16006. ⟨10.1021/jacs.1c05367⟩ Article dans une revue hal-03360584v1
	Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods Manon Ruffini , Jelena Vucinic , Simon De de Givry , George Katsirelos , Sophie Barbe Algorithms, 2021, 14 (6), pp.168. ⟨10.3390/a14060168⟩ Article dans une revue hal-03244149v1
	Protein Design with Deep Learning Marianne Defresne , Sophie Barbe , Thomas Schiex International Journal of Molecular Sciences, 2021, 22 (21), ⟨10.3390/ijms222111741⟩ Article dans une revue hal-03602603v1
	Positive multistate protein design Jelena Vucinic , David Simoncini , Manon Ruffini , Sophie Barbe , Thomas Schiex Bioinformatics, 2020, ⟨10.1093/bioinformatics/btz497⟩ Article dans une revue hal-02625007v1
	Aide à la conception Juan Cortés , Thomas Schiex Le petit illustré, regards croisés de chercheur.es, 2020 Article dans une revue hal-03436420v1
	Graphical Models: Queries, Complexity, Algorithms Martin Cooper , Simon de Givry , Thomas Schiex Leibniz International Proceedings in Informatics , 2020, 154, pp.4:1--4:22. ⟨10.4230/LIPIcs.STACS.2020.4⟩ Article dans une revue hal-02547692v1
	A structural homology approach for computational protein design with flexible backbone David Simoncini , Kam y J Zhang , Thomas Schiex , Sophie Barbe Bioinformatics, 2019, 35 (14), ⟨10.1093/bioinformatics/bty975⟩ Article dans une revue hal-02114756v1
	Computational design of symmetrical eight-bladed β-propeller proteins Hiroki Noguchi , Christine Addy , David Simoncini , Staf Wouters , Bram Mylemans International Union of Crystallography journal, 2019, 6 (1), pp.46-55. ⟨10.1107/S205225251801480X⟩ Article dans une revue hal-02154353v1

	Scalable Coupling of Deep Learning with Logical Reasoning * Marianne Defresne , Sophie Barbe , Thomas Schiex Thirty-Second International Joint Conference on Artificial Intelligence (IJCAI-23), Edith Elkind, University of Oxford, UK, Aug 2023, Macao, China. ⟨10.24963/ijcai.2023/402⟩ Communication dans un congrès hal-04222857v1
	Protein Design with Automated Reasoning and Deep Learning Marianne Defresne , Delphine Dessaux , Thomas Schiex , Sophie Barbe Symposium on Systems and Synthetic Biology (BioSynSys2022), Sep 2022, Paris, France Communication dans un congrès hal-04223575v1
	Pushing Data into CP Models Using Graphical Model Learning and Solving Celine Brouard , Simon de Givry , Thomas Schiex International Conference on Principles and Practice of Constraint Programming, Sep 2020, Louvain La Neuve, Belgium Communication dans un congrès hal-02942378v1
	Guaranteed Diversity & Quality for the Weighted CSP Manon Ruffini , Jelena Vucinic , Simon de Givry , George Katsirelos , Sophie Barbe 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI), Nov 2019, Portland, United States. pp.18-25, ⟨10.1109/ICTAI.2019.00012⟩ Communication dans un congrès hal-03181764v1

	Cost Function Networks to Solve Large Computational Protein Design Problems David Allouche , Sophie Barbe , Simon de Givry , George Katsirelos , Yahia Lebbah Malek Masmoudi, Bassem Jarboui, Patrick Siarry. Operations Research and Simulation in healthcare, Springer, pp.81-102, 2021, 978-3-030-45223-0. ⟨10.1007/978-3-030-45223-0_4⟩ Chapitre d'ouvrage hal-02177634v1
	Valued Constraint Satisfaction Problems Martin Cooper , Simon de Givry , Thomas Schiex A Guided Tour of Artificial Intelligence Research, 2, Springer International Publishing, pp.185-207, 2020, AI Algorithms, 978-3-030-06167-8. ⟨10.1007/978-3-030-06167-8_7⟩ Chapitre d'ouvrage hal-02942366v1
	EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes Erika Sallet , Thomas Schiex , Jerome Gouzy Gene Prediction : Methods and Protocols, Humana Press INC., Springer Science, 2019, Methods in Molecular Biology, 978-1-4939-9173-0. ⟨10.1007/978-1-4939-9173-0_6⟩ Chapitre d'ouvrage hal-02790731v1