CV Thomas Faraut

Annie Robic, Chloé Cerutti, Christa Kühn, Thomas Faraut. Comparative analysis of the circular transcriptome in muscle, liver, and testis in three livestock species. Frontiers in Genetics, Frontiers, 2021, 12, ⟨10.3389/fgene.2021.665153⟩. ⟨hal-03264869⟩

Mahendra Mariadassou, Marie Suez, Sanbadam Sathyakumar, Alain Vignal, Mariangela Arca, et al.. Unraveling the history of the genus Gallus through whole genome sequencing. Molecular Phylogenetics and Evolution, Elsevier, 2021, 158, pp.107044. ⟨10.1016/j.ympev.2020.107044⟩. ⟨hal-03155990⟩

Annie Robic, Thomas Faraut, Katia Feve, Sarah Djebali, Armelle Prunier, et al.. Correlation networks provide new insights into the architecture of testicular steroid pathways in pigs. Genes, MDPI, 2021, 12 (4), pp.1-19. ⟨10.3390/genes12040551⟩. ⟨hal-03222223⟩

Annie Robic, Thomas Faraut, Sarah Djebali, Rosemarie Weikard, Katia Feve, et al.. Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs. RNA Biology, Taylor & Francis, 2019, 16, pp.1-15. ⟨10.1080/15476286.2019.1621621⟩. ⟨hal-02622408⟩

Sylvain Foissac, Sarah Djebali, Kylie Munyard, Nathalie Vialaneix, Andrea Rau, et al.. Multi-species annotation of transcriptome and chromatin structure in domesticated animals. BMC Biology, BioMed Central, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩. ⟨hal-02437599⟩

Katia Feve, Sylvain Foissac, Alain Pinton, Florence Mompart, Diane Esquerré, et al.. Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing. PLoS ONE, Public Library of Science, 2017, 12 (11), Non paginé. ⟨10.1371/journal.pone.0187617⟩. ⟨hal-02622330⟩

Hélène Badouin, Jerome Gouzy, Christopher Grassa, Florent Murat, S Evan Staton, et al.. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature, Nature Publishing Group, 2017, 546 (7656), pp.148-152. ⟨10.1038/nature22380⟩. ⟨hal-01603287⟩

Maria Inès Fariello Rico, Simon Boitard, Sabine Mercier, David Robelin, Thomas Faraut, et al.. Accounting for Linkage Disequilibrium in genome scans for selection without individual genotypes: the local score approach. Molecular Ecology, Wiley, 2017, 26 (14), pp.3700-3714. ⟨10.1111/mec.14141⟩. ⟨hal-01607837⟩

Magali San Cristobal, Florian Rohart, Christine Lascor, Marcel Bouffaud, Lidwine Trouilh, et al.. Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds. BMC Genomics, BioMed Central, 2015, 16, Non paginé. ⟨10.1186/s12864-015-2259-9⟩. ⟨hal-01245970⟩

Annie Boulliou-Robic, Thomas Faraut, Armelle Prunier. Pathways and genes involved in steroid hormone metabolism in male pigs: A review and update. Journal of Steroid Biochemistry and Molecular Biology, Elsevier, 2014, 140, pp.44-55. ⟨10.1016/j.jsbmb.2013.11.001⟩. ⟨hal-01210569⟩

Yu Jiang, Min Xie, Wenbin Chen, Richard Talbot, Jillian F. Maddox, et al.. The sheep genome illuminates biology of the rumen and lipid metabolism. Science, American Association for the Advancement of Science, 2014, 344 (6188), pp.1168-1173. ⟨10.1126/science.1252806⟩. ⟨hal-02635391⟩

Erika Sallet, Brice Roux, Laurent Sauviac, M.-F. Jardinaud, S. Carrere, et al.. Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011. DNA Research, Oxford University Press (OUP), 2013, 20 (4), pp.339-353. ⟨10.1093/dnares/dst014⟩. ⟨hal-03082947⟩

Yang Dong, Min Xie, Yu Jiang, Nianqing Xiao, Xiaoyong Du, et al.. Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus). Nature Biotechnology, Nature Publishing Group, 2013, 31 (2), pp.135-141. ⟨10.1038/nbt.2478⟩. ⟨hal-02651460⟩

Yinhua Huang, Yingrui Li, David W Burt, Hualan Chen, Yong Zhang, et al.. The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics, Nature Publishing Group, 2013, 45 (7), pp.776-783. ⟨10.1038/ng.2657⟩. ⟨hal-02652041⟩

Alain Vignal, Christian Diot, Caroline Molette, Thomas Faraut, Man Rao, et al.. Génomique des canards. INRA Productions Animales, Paris: INRA, 2013, 26 (5), pp.391-402. ⟨hal-01207754⟩

Man Rao, Mireille Morisson, Thomas Faraut, Suzanne Bardes, Katia Feve, et al.. A duck RH panel and its potential for assisting NGS genome assembly. BMC Genomics, BioMed Central, 2012, 13 (september), Non paginé. ⟨10.1186/1471-2164-13-513⟩. ⟨hal-02646793⟩

Martien A. M. Groenen, Alan L. Archibald, Hirohide Uenishi, Christopher K. Tuggle, Yasuhiro Takeuchi, et al.. Analyses of pig genomes provide insight into porcine demography and evolution. Nature, Nature Publishing Group, 2012, 491 (7426), pp.393-398. ⟨10.1038/nature11622⟩. ⟨cea-00880676⟩

Bertrand Servin, Thomas Faraut, Nathalie Iannuccelli, Diana Zelenika, Denis Milan. High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly. BMC Genomics, BioMed Central, 2012, 13, online (november), Non paginé. ⟨10.1186/1471-2164-13-585⟩. ⟨hal-02644217⟩

Eric Audemard, Thomas Schiex, Thomas Faraut. Detecting long tandem duplications in genomic sequences. BMC Bioinformatics, BioMed Central, 2012, 13, online (may), Non paginé. ⟨10.1186/1471-2105-13-83⟩. ⟨hal-02650334⟩

Laurence Liaubet, Valérie Lobjois, Thomas Faraut, Aurélie Tircazes, Francis Benne, et al.. Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism.. BMC Genomics, BioMed Central, 2011, 12 (november), pp.548. ⟨10.1186/1471-2164-12-548⟩. ⟨hal-00842687⟩

Bertrand Servin, Simon de Givry, Thomas Faraut. Statistical confidence measures for genome maps: application to the validation of genome assemblies. Bioinformatics, Oxford University Press (OUP), 2010, 26 (24), pp.3035-3042. ⟨10.1093/bioinformatics/btq598⟩. ⟨hal-02665786⟩

. The International Sheep Genomics Consortium, A.L. Archibald, N.E. Cockett, B.P. Dalrymple, Thomas Faraut, et al.. The sheep genome reference sequence: a work in progress. Animal Genetics, Wiley-Blackwell, 2010, 41 (5), pp.449-453. ⟨10.1111/j.1365-2052.2010.02100.x⟩. ⟨hal-02668022⟩

Frederique Pitel, Thomas Faraut, Gilles Bruneau, Philippe Monget. Is there a leptin gene in the chicken genome? Lessons from phylogenetics, bioinformatics and genomics. General and Comparative Endocrinology, Elsevier, 2010, 167 (1), pp.1-5. ⟨10.1016/j.ygcen.2009.10.006⟩. ⟨hal-01129469⟩

Michael Abrouk, Florent Murat, Caroline Pont, Joachim Messing, Scott Jackson, et al.. Palaeogenomics of plants: synteny-based modelling of extinct ancestors.. Trends in Plant Science, Elsevier, 2010, 15 (9), pp.479-87. ⟨10.1016/j.tplants.2010.06.001⟩. ⟨hal-00681093⟩

Thomas Faraut, Simon de Givry, Christophe Hitte, Yvette Lahbib-Mansais, Mireille Morisson, et al.. Contribution of Radiation Hybrids to Genome Mapping in Domestic Animals.. Cytogenetic and Genome Research, Karger, 2009, 126 (1-2), pp.21-33. ⟨10.1159/000245904⟩. ⟨inserm-00442389⟩

Jerome Salse, Michaël Abrouk, Stéphanie Bolot, Nicolas Guilhot, Emmanuel Courcelle, et al.. Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2009, 106 (35), pp.14908-14913. ⟨10.1073/pnas.0902350106⟩. ⟨hal-00964188⟩

Annie Robic, Thomas Faraut, Laurence Liaubet, Denis Milan. The carnitine acetyltransferase gene (CRAT): a characterization of porcine transcripts with insights into the 5'-end variants of mammalian transcripts and their possible sub-cellular localization. Cellular and Molecular Biology Letters, Springer Verlag (Germany), 2009, 14 (1), pp.90-99. ⟨10.2478/s11658-008-0036-3⟩. ⟨hal-02663909⟩

Thomas Faraut. Addressing chromosome evolution in the whole-genome sequence era.. Chromosome Research, Springer Verlag, 2008, 16, pp.5-16. ⟨hal-02653333⟩

Emmanuel Courcelle, Yoann Beausse, Sébastien Letort, Olivier Stahl, Julien Fremez, et al.. Narcisse: a mirror view of conserved syntenies. Nucleic Acids Research, Oxford University Press, 2008, 36 (1), pp.D485-D490. ⟨10.1093/nar/gkm805⟩. ⟨hal-02656575⟩

Annie Robic, Thomas Faraut, Laurence Liaubet, Juliette Riquet, Denis Milan, et al.. Characterization of porcine ASB6 gene and transcripts - Comparison of mammalian transcripts. Animal Biotechnology, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2008, 19, pp.138-143. ⟨hal-02657001⟩

François Enault, Romain Fremez, Eric Baranowski, Thomas Faraut. Alvira: comparative genomics of viral strains.. Bioinformatics, Oxford University Press (OUP), 2007, 23, pp.2178-2179. ⟨hal-02654862⟩

Romain Fremez, Thomas Faraut, Gwennaële Fichant, Jerome Gouzy, Y. Quentin. Phylogenetic exploration of bacterial genomic rearrangements.. Bioinformatics, Oxford University Press (OUP), 2007, 23, pp.1172-1174. ⟨hal-02653698⟩

Mathieu Gautier, Thomas Faraut, Katayoun Moazami Goudarzi, Vincent Navratil, Mario Foglio, et al.. Genetic and haplotypic structure in 14 European and African cattle breeds. Genetics, Genetics Society of America, 2007, 177, pp.1059-1070. ⟨hal-02660515⟩

Thomas Faraut, Simon de Givry, Patrick Chabrier, Thomas Derrien, Francis Galibert, et al.. A comparative genome approach to marker ordering. Bioinformatics, Oxford University Press (OUP), 2007, 23 (2), pp.E50-E56. ⟨10.1093/bioinformatics/btl321⟩. ⟨hal-02667668⟩

Yvette Lahbib Mansais, Denis Milan, Thomas Faraut, Martine Yerle. Vers une carte comparée des génomes homme / porc hautement résolutive. Biofutur, Elsevier - Cachan : Lavoisier, 2007, 26, pp.39-43. ⟨hal-02662738⟩

François Enault, Romain Fremez, Eric Baranowski, Thomas Faraut. Alvira: comparative genomics of viral strains.. Bioinformatics, Oxford University Press (OUP), 2007, 23 (16), pp.2178-9. ⟨10.1093/bioinformatics/btm293⟩. ⟨hal-00535599⟩

Yvette Lahbib Mansais, Florence Mompart, Denis Milan, Sophie Leroux, Thomas Faraut, et al.. Evolutionary breakpoints through a high-resolution comparative map between porcine chromosomes 2 and 16 and human chromosomes. Genomics, Elsevier, 2006, 88, pp.504-512. ⟨hal-02656467⟩

Pierre Cavaillès, Véronique Sergent, Cordelia Bisanz, Olivier Papapietro, Céline Colacios, et al.. The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms.. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2006, 103 (3), pp.744-9. ⟨10.1073/pnas.0506643103⟩. ⟨hal-00171244⟩

Yvette Lahbib Mansais, P. Karlskov-Mortensen, Florence Mompart, Denis Milan, C.B. Jorgensen, et al.. A high-resolution comparative map between pig chromosome 17 and human chromosomes 4, 8, and 20: Identification of synteny breakpoints. Genomics, Elsevier, 2005, 86, pp.405-413. ⟨hal-02670629⟩

Mireille Morisson, Sophie Leroux, Carine Jiguet-Jiglaire, Sirine Assaf, Frédérique Pitel, et al.. A gene-based radiation hybrid map of chicken microchromosome 14 : comparison to human and alignment to the assembled chicken sequence. Genetics Selection Evolution, BioMed Central, 2005, 37, pp.229-251. ⟨10.1051/gse:2004046⟩. ⟨hal-02670446⟩

Thomas Faraut. Comparative mapping of genomes.. Biofutur, Elsevier - Cachan : Lavoisier, 2005, 37, pp.40. ⟨hal-02672330⟩

N. Bosak, R. Yamomoto, S. Fujisaki, Thomas Faraut, S. Kiuchi, et al.. A dense comparative gene map between human chromosome 19q13.3 -> q13.4 and a homologous segment of swine chromosome 6.. Cytogenetic and Genome Research, Karger, 2005, 108, pp.317-321. ⟨hal-02678722⟩

Alain Pinton, Thomas Faraut, Martine Yerle, Joseph Gruand, F. Pellestor, et al.. Comparison of male and female meiotic segregation patterns in translocation heterozygotes : a case study in an animal model (Sus scrofa domestica L.). Human Reproduction, Oxford University Press (OUP), 2005, 20, pp.2476-2482. ⟨hal-02674136⟩

G. Weil, K. Heus, Thomas Faraut, J. Demongeot. The cyclic genetic code as a constraint satisfaction problem.. Theoretical Computer Science, Elsevier, 2004, 322, pp.313-334. ⟨hal-02673209⟩

Mireille Morisson, C. Jiguet-Jiglaire, Sophie Leroux, Thomas Faraut, Suzanne Bardes, et al.. Development of a gene-based radiation hybrid map of chicken Chromosome 7 and comparison to human and mouse.. Mammalian Genome, Springer Verlag, 2004, 15, pp.732-739. ⟨hal-02673764⟩

Yvette Lahbib Mansais, Florence Mompart, Thomas Faraut, Denis Milan, Martine Yerle. A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human. Cytogenetic and Genome Research, Karger, 2004, 106, pp.11. ⟨hal-02669950⟩

Yvette Lahbib Mansais, Florence Mompart, Thomas Faraut, Denis Milan, Martine Yerle. A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human. Cytogenetic and Genome Research, Karger, 2004, 106, pp.11-11. ⟨hal-02673120⟩

C. Allal, C. Buisson-Brenac, V. Marion, C. Claudel-Renard, Thomas Faraut, et al.. Human cytomegalovirus carries a cell-derived phospholipase A2 required for infectivity.. Journal of Virology, American Society for Microbiology, 2004, 78, pp.7717-7726. ⟨hal-02674890⟩

Florence Mompart, Yvette Lahbib Mansais, Thomas Faraut, Denis Milan, Martine Yerle. RH mapping in pig to study evolutionary breakpoints between HSA7 and SSC3, 9 and 18. Cytogenetic and Genome Research, Karger, 2004, 106, pp.18. ⟨hal-02670370⟩

C. Müller, M. Denis, Laurent Gentzbittel, Thomas Faraut. The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.. Nucleic Acids Research, Oxford University Press, 2004, 32, pp.W429-W434. ⟨hal-02675844⟩

Alain Pinton, A. Ducos, Martine Yerle, Thomas Faraut, F. Pellestor. Male and female segregation profiles in two reciprocal translocations t(12 ; 14)(q13 ; q21) t(3 ; 15)(q27 ; q13) in the pig species. Fertility and Sterility, Elsevier, 2004, 82 (Suppl. 2), pp.S272. ⟨hal-02674861⟩

Alain Pinton, A. Ducos, Martine Yerle, Thomas Faraut, F. Pellestor. Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in pig. Cytogenetic and Genome Research, Karger, 2004, 106, pp.14-15. ⟨hal-02671512⟩

Olivier Demeure, Christine Renard, Martine Yerle, Thomas Faraut, Juliette Riquet, et al.. Rearranged gene order between pig and human in a QTL region on SSC 7. Mammalian Genome, Springer Verlag, 2003, 14, pp.71-80. ⟨10.1007/s00335-002-3034-1⟩. ⟨hal-02679052⟩

Mireille Morisson, C. Jiguet-Jiglaire, Alexis Lemiere, Sophie Leroux, Thomas Faraut, et al.. A radiation hybrid panel and its use in developing a gene map of the chicken. British Poultry Science, Taylor & Francis, 2003, 44, pp.797-798. ⟨hal-02674651⟩

Annie Robic, Thomas Faraut, Nathalie Iannuccelli, Yvette Lahbib Mansais, V. Cantegrel, et al.. A new contribution to the integration of human and porcine genome maps: 623 new points of homology. Cytogenetic and Genome Research, Karger, 2003, 102, pp.100-108. ⟨hal-02671887⟩

N. Bosak, Thomas Faraut, S. Mikawa, H. Uenishi, S. Kiuchi, et al.. Construction of a high-resolution comparative gene map between swine chromosome region 6q11 -> q21 and human chromosome 19 q-arm by RH mapping of 51 genes.. Cytogenetic and Genome Research, Karger, 2003, 102, pp.109-115. ⟨hal-02676236⟩

C. Claudel-Renard, Claude Chevalet, Thomas Faraut, D. Kahn. Enzyme-specific profiles for genome annotation: PRIAM.. Nucleic Acids Research, Oxford University Press, 2003, 31, pp.6633-6639. ⟨hal-02676567⟩

Mireille Morisson, Thomas Faraut, Martine Yerle, Alain Vignal. A chicken radiation hybrid panel and its use for mapping. Archiv für Geflügelkunde. Sonderheft, 2002, Special Issue, pp.35. ⟨hal-02675399⟩

Thomas Faraut, M.A. Mermet, J. Demongeot, O. Cohen. Cooperation of selection and meiotic mechanisms in the production of imbalances in reciprocal translocations.. Cytogenetics and Cell Genetics, S Karger AG, 2000, 88, pp.15-21. ⟨hal-02694908⟩

Sarah Djebali Quelen, Sylvain Foissac, Nathalie Vialaneix, Kylie Munyard, Andrea Rau, et al.. Chromatin accessibility conservation across four livestock species. Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain. ⟨hal-02788732⟩

Annie Robic, Katia Feve, Thomas Faraut, Sarah Djebali, R. Weikard, et al.. Pig transcriptome analysis suggests a global regulation mechanism enabling temporary bursts of circular RNAs. 37. International Society for Animal Genetics Conference (ISAG), Jul 2019, Lleida, Spain. ⟨hal-02788077⟩

Annie Robic, Sarah Djebali Quelen, Thomas Faraut. Vers une meilleure compréhension des fonctions & des interactions des ARN circulaires. Journées Scientifiques du Département Génétique Animale - La Génétique Animale et les Interactions, Oct 2018, Dienné, France. ⟨hal-02785651⟩

Alain Pinton, Anne Calgaro, Nicolas Mary, Harmonie Barasc, Nathalie Bonnet, et al.. Meiotic and gene expression analyses in a case of t(1;15) azoospermic boar. 23. International Colloquium on Animal Cytogenetics and Genomics (23 ICACG), Jun 2018, Saint-Pétersburg, Russia. 360 p. ⟨hal-02737986⟩

Gwenola Tosser-Klopp, Philippe Bardou, Laure Denoyelle, Thomas Faraut, Francois Pompanon. VarGoats: first results of an international 1000-genome project. International Symposium on Environmental and Agronomical Genomics, Nov 2018, Paris, France. ⟨hal-02785613⟩

Gwenola Tosser-Klopp, Julie Demars, Laurence Drouilhet, Stéphane Fabre, Thomas Faraut, et al.. The analysis of sheep and goat genomes reveals new biological mechanisms explaining the variation of Mendelian and complex phenotypes. Séminaire mensuel (CRAG), Nov 2018, Barcelone, Spain. ⟨hal-02785242⟩

Thomas Faraut. Genome structural variability in the light of NGS. 22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116 p. ⟨hal-01602943⟩

Annabelle Congras, Harmonie Barasc, Valentine Marquet, Kamila Canale-Tabet, Emeline Lhuillier, et al.. Effects of balanced chromosome translocations on boar fertility and cell reprogramming. 22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116p. ⟨hal-02738753⟩

Gabriel Rognon, Diane Esquerre, Sylvain Foissac, Alain Vignal, Jean-Luc Coville, et al.. De novo Assembly of the Chinese Bamboo-Partridge Genome and Comparison with Chicken. Plant and Animal Genome (PAG), Jan 2015, San Diego, United States. ⟨hal-01194054⟩

Valerie Fillon, Man Rao, Thomas Faraut, Daren Griffin, Mireille Morisson, et al.. Numerous interchromosomal rearrangements in spite of high synteny conservation between duck and chicken. 21. International Colloquium on Animal Cytogenetics and Gene Mapping, Jun 2014, Ischia, Italy. ⟨hal-02793231⟩

Sylvain Foissac, Diane Esquerre, Katia Feve, Juliette Riquet, Thomas Faraut. Improving the Pig Genome Assembly with Mate-Pair Sequencing. Plant and Animal Genome (PAG), Jan 2014, San Diego, United States. ⟨hal-02739253⟩

Sophie Leroux, Patrice Dehais, Alain Vignal, Olivier Bouchez, Thomas Faraut, et al.. Detection de SNP chez la caille : production d'un outil commum pour des programmes scientifiques multiples. 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). Nouzilly, FRA. Institut National de la Recherche Agronomique (INRA). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), FRA., Mar 2013, La Rochelle, France. ⟨hal-01190264⟩

Man Rao, Mireille Morisson, Valerie Fillon, Sophie Leroux, Emeline Lhuillier, et al.. Mapping by RH sequencing: organizing NGS scaffolds into chromosomes. 21. P!ant and animal genome meeting (PAG XXI), Jan 2013, San Diego, Californie, United States. ⟨hal-02749835⟩

Simon Boitard, Maria Inès Fariello Rico, Sabine Mercier, David Robelin, Thomas Faraut, et al.. Local score based method on pool-sequenced behaviour-divergent quail lines precisely detected selection signatures related to autism. 35. Colloque du Petit Pois Déridé, Aug 2013, Marseille, France. ⟨hal-02810860⟩

Gwenola Tosser Klopp, Cédric Cabau, Andre Eggen, Thomas Faraut, Henri Heuven, et al.. Goat genome assembly, availability of an international 50K SNP chip and RH panel: an update of the international goat genome consortium projects. 20. Conference of the Plant & Animal Genome, Plant & Animal Genome (PAG). USA., Jan 2012, San Diego, United States. 28 diapositives. ⟨hal-01019243⟩

Gwenola Tosser-Klopp, Abdullah Johari Jiken, Philippe Bardou, Cédric Cabau, Patrice Dehais, et al.. Towards a high density SNP International Goat Chip. Plant and Animal Genome, Jan 2011, San Diégo, United States. ⟨hal-01194170⟩

Eric Audemard, Thomas Faraut, Thomas Schiex. Détection de régions génomiques homologues par un algorithme de flots avec coûts. Congrès ROADEF'2010, Société Française de Recherche Opérationnelle et d'Aide à la Décision (SFROAD). FRA., Feb 2010, Toulouse, France. 2 p. ⟨hal-02752130⟩

Bertrand Servin, Sebastien Givry, Thomas Faraut. Modelling RH maps uncertainty and application to the validation of whole genome assemblies.. 9th World Congress on Genetics Applied to Livestock Production, 2010, Leipzig, pp.Inconnu. ⟨hal-02813656⟩

Carole Moreno, Bertrand Servin, Thomas Faraut, Christophe Klopp, Rachel Rupp, et al.. Utilisation dune puce 60 000 SNP pour cartographier finement des QTL affectant des caractères de production, de résistance aux maladies et de comportement chez les ovins. 16. Rencontres autour des Recherches sur les Ruminants, Dec 2009, Paris, France. ⟨hal-02755058⟩

Bertrand Servin, Thomas Faraut, Sebastien Givry. Modéliser l'incertitude des cartes d'hybrides irradiés : application à la validation d'assemblage de génomes complets.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02754669⟩

Carole Moreno, Andres Legarra, David Robelin, Christèle Robert Granié, Rachel Rupp, et al.. Présentation du projet ANR 2008 SheepSNPQTL : utilisation de la puce 60 000 SNP pour la cartographie fine de QTL chez les ovins.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau, France. ⟨hal-02813290⟩

Thomas Faraut, E. Courcelle, Jerome Gouzy. D'Iccare à Narcisse, une promenade parmi les mythes de la bioinformatique animale.. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02756487⟩

Annie Robic, Thomas Faraut, Laurence Liaubet. Deux exemples d'épissage alternatif (ASB6 et CRAT) pour montrer l'intérêt de l'étude de ce phénomène chez les espèces d'élevage. Journées Scientifiques, Département de Génétique Animale, Apr 2008, Lacanau. ⟨hal-02752629⟩

Alain Vignal, Caroline Hourcade, Thomas Faraut, Sophie Leroux, Marine Douaud, et al.. High resolution chicken radiation hybrid maps using the IlluminaTM technology.. 31st Conference of the International Society of Animal Genetics (ISAG), 2008, Amsterdam, pp.Inconnu. ⟨hal-02815790⟩

Thomas Faraut, E. Courcelle, Jerome Gouzy. ArcAnGe, annotating, representing and comparing animal genomes.. Séminaire AGENAE, La Rochelle, Oct 2008, France, pp.Inconnu. ⟨hal-02815778⟩

Patrice Dehais, Denis Milan, Thomas Faraut, C. Dossat, Patrick Wincker, et al.. A SNP detection project using one million reads from WGS libraries produced from one pig from seven different breeds.. International Plant & Animal Genomes XV Conference, San Diego, 2007, California, France. ⟨hal-02751166⟩

Thomas Faraut. Chromosomal rearrangements and comparative mapping.. Séminaire Cytogénétique des plantes Clermont-Ferrand, Apr 2007, France, pp.Inconnu. ⟨hal-02811665⟩

Yvette Lahbib Mansais, Florence Mompart, Denis Milan, Thomas Faraut, Martine Yerle. High resolution mapping of evolutionary breakpoints in pigs. 17. European Colloquium on Animal Cytogenetics and Gene mapping, June 18-21, 2006, Lisbonne, Portugal. ⟨hal-02813597⟩

P. Cavaillès, V. Sergent, C. Bisanz, O. Papapietro, C. Colacios, et al.. The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms. Inconnu, 2006, Inconnu. ⟨hal-02752628⟩

Yvette Lahbib Mansais, M.P. Karlskov, Florence Mompart, Jan Gorodkin, Thomas Faraut, et al.. A comparative radiation hybrid map of SSC17 and human homologous chromosomes HSA 20, 8 and 4. 29. International Conference on International Society of Animla Genetics, Sep 2004, Tokyo, Japan. ⟨hal-02761544⟩

Florence Mompart, Yvette Lahbib Mansais, Thomas Faraut, Denis Milan, Martine Yerle. RH mapping in pig to study evolutionary breakpoints between HSA7 and SSC3, 9 and 18. 16. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France. ⟨hal-02827995⟩

Alain Pinton, A. Ducos, Martine Yerle, Thomas Faraut, F. Pellestor. Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in pig. 16th European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France. ⟨hal-02829792⟩

Alain Pinton, Martine Yerle, Thomas Faraut, F. Pellestor, H.M. Berland, et al.. Reciprocal translocations in pigs: frequency in the French populations and analysis of their consequences on reproduction abilities of carrier animals. 11th Internnational Congress on Biotechnology in Animal Reproduction, Sep 2004, Rapotin, pp.Inconnu. ⟨hal-02827383⟩

Alain Pinton, A. Ducos, Martine Yerle, Thomas Faraut, F. Pellestor. Male and female segregation profiles in two reciprocal translocations t(12;14)(q13;q21) and t(3;15)(q27;q13) in the pig species. 60th Annual Meeting of the American Society for Reproductive Medicine, Oct 2004, Philadelphia, pp.Inconnu. ⟨hal-02831758⟩

Yvette Lahbib Mansais, Florence Mompart, Thomas Faraut, Denis Milan, Martine Yerle. A comparative porcine-human RH map for SSC2 focusing on synteny breakpoints with human. 16. European Colloquium on Animal Cytogenetics and Gene Mapping, 2004, Jouy-en-Josas, France. ⟨hal-02826042⟩

Annie Robic, Thomas Faraut, Nathalie Iannuccelli, Patrick Chardon, Denis Milan. Integration des cartes humaines et porcines : 623 nouveaux points d'homologie. Colloque Génomique des animaux d'élevage, Seignosse-le-Penon, May 2003, Seignosse-le-Peignon. ⟨hal-02762328⟩

Mireille Morisson, C. Jiguet-Jiglaire, Alexis Lemiere, Sophie Leroux, Thomas Faraut, et al.. Un panel d'hybrides irradiés et son utilisation pour développer une carte des gènes de la poule. 5èmes Journées de la Recherche Avicole, 2003, Tours, France. ⟨hal-02761067⟩

Thomas Faraut. Promises and lessons from complete genome sequences for comparative mapping.. International Workshop on Major Genes and QTL in Sheep and Goat, 2003, Toulouse. ⟨hal-02760525⟩

Mireille Morisson, C. Jiguet-Jiglaire, Alexis Lemiere, Sophie Leroux, Thomas Faraut, et al.. A radiation hybrid panel and its use in developing a gene map of the chicken. 2003 Spring Meeting of the WPSA French Branch., 2003, Inconnu. ⟨hal-02826038⟩

Mireille Morisson, Thomas Faraut, Martine Yerle, Alain Vignal. A chicken radiation hybrid panel and its use for mapping. 11th European Poultry Conference, Sep 2002, Bremen, Germany. ⟨hal-02825614⟩

Carole Iampietro, Camille Eché, Adrien Castinel, Rémy-Félix Serre, Christophe Klopp, et al.. A Long Read project to find optimal technologic combinations for genome assembly and variability, epigenetic marks detection and metagenomic analysis. PAG XXVIII, Plant and Animal Genome, Jan 2020, San Diego, United States. 2020. ⟨hal-02947690⟩

Annie Robic, Sarah Djebali, Rosemarie Weikard, Christa Kuehn, Thomas Faraut. the ability to produce exonic circularRNA appears to be mainly linked to the genomic structure of genes. RNAtoul 2019, Jun 2019, Toulouse, France. 2019. ⟨hal-02788016⟩

Camille Mestre, Sarah Djebali Quelen, Thomas Faraut, Nathalie Vialaneix, Andrea Rau, et al.. Integrative analyses of chromosome conformation, chromatin accessibility and gene expression in human and livestock genomes. European Conference on Computational Biology (ECCB 2018), Sep 2018, Athènes, Greece. 2018. ⟨hal-02784857⟩

Maria Inès Fariello Rico, Simon Boitard, S. Mercier, David Robelin, Thomas Faraut, et al.. Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To Autism. 10. World Congress on Genetics Applied to Livestock Production (WCGALP), Aug 2014, Vancouver, Canada. American Society of Animal Science, 2014, 10th Word Congress on Genetics Applied to Livestock Production. ⟨hal-01194042⟩

Maria Inès Fariello Rico, Cécile Arnould, Simon Boitard, Patrice Dehais, Thomas Faraut, et al.. Local Score Based Method On Pool-Sequenced Behavior-Divergent Quail Lines Precisely Detected Selection Signatures Related To Autism. Journée Régionale de Bioinformatique et Biostatistique, Génopole Toulouse, Jun 2014, Toulouse, France. 2014. ⟨hal-01194044⟩

Annie Boulliou-Robic, Laurence Liaubet, Agnès Bonnet, Thomas Faraut. Evaluation of the porcine Sscrofa10.2 assembly and associated annotations.. 25. International Conference Genetic Days, Sep 2012, Wroclaw, Poland. 2012. ⟨hal-02804016⟩

Man Rao, Alain Vignal, Mireille Morisson, Valérie Fillon, Sophie Leroux, et al.. RH mapping by sequencing: chromosome-scale assembly of the duck genome. 2019, ⟨10.1101/846840⟩. ⟨hal-02961799⟩

Man Rao, Alain Vignal, Mireille Morisson, Valérie Fillon, Sophie Leroux, et al.. RH mapping by sequencing: chromosome-scale assembly of the duck genome. 2019. ⟨hal-02955250⟩

Maria Inès Fariello Rico, Simon Boitard, Sabine Mercier, David Robelin, Thomas Faraut, et al.. A new local score based method applied to behavior-divergent quail lines sequenced in pools precisely detects selection signatures on genes related to autism. 2015. ⟨hal-01194146⟩