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Thomas Denecker

19
Documents

Publications

EMERGEN-BioInfo The digital platform for the French SARS-CoV-2 genomic surveillance and research program

Thomas Denecker , Imane Messak , Anliat Mohamed , Chiara Antoinat , Arthur Le Bars
Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , 2022, ⟨10.5281/ZENODO.6778707⟩
Article dans une revue hal-04495542v1
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FAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biology

Thomas Denecker , Claire Toffano-Nioche
JOSE - Journal of Open Source Education, 2021, ⟨10.21105/jose.00068⟩
Article dans une revue hal-02880655v2
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Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata

Thomas Denecker , Youfang Zhou Li , Cécile Fairhead , Karine Budin , Jean-Michel Camadro
NAR Genomics and Bioinformatics, 2020, 2 (2), pp.lqaa027. ⟨10.1093/nargab/lqaa027⟩
Article dans une revue hal-03452211v1
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Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata

Thomas Denecker , Youfang Zhou li , Cécile Fairhead , Karine Budin , Jean-Michel Camadro
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa027⟩
Article dans une revue hal-03100086v1
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Efficient, quick and easy-to-use DNA replication timing analysis with START-R suite

Djihad Hadjadj , Thomas Denecker , Eva Guérin , Su-Jung Kim , Fabien Fauchereau
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa045⟩
Article dans une revue hal-02929259v1
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Pixel: a content management platform for quantitative omics data

Thomas Denecker , William Durand , Julien Maupetit , Charles Hébert , Jean-Michel Camadro
PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩
Article dans une revue hal-03100146v1
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Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility

Gaëlle Lelandais , Thomas Denecker , Camille Garcia , Nicolas Danila , Thibaut Léger
BMC Research Notes, 2019, 12 (1), pp.470. ⟨10.1186/s13104-019-4505-8⟩
Article dans une revue hal-02389332v1

Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface

Thomas Denecker , Gaëlle Lelandais
BMC Research Notes, 2018, 11 (1), pp.698. ⟨10.1186/s13104-018-3802-y⟩
Article dans une revue hal-02177599v1

A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas

Djihad Hadjadj , Su-Jung Kim , Thomas Denecker , Laura Ben Driss , Jean-Charles Cadoret
Aging, 2017, 9 (12), pp.2695-2716. ⟨10.18632/aging.101356⟩
Article dans une revue hal-02363044v1

Characterization of the replication timing program of 6 human model cell lines

Djihad Hadjadj , Thomas Denecker , Chrystelle Maric , Fabien Fauchereau , Giuseppe Baldacci
Genomics Data, 2016, 9, pp.113 - 117. ⟨10.1016/j.gdata.2016.07.003⟩
Article dans une revue hal-01406426v1
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Madbot

Thomas Denecker , Julien Seiler
17ème Atelier de Données bioinformatiques de diversité, Dimitry Khvorostyanov, Mar 2024, Roscoff, France
Communication dans un congrès hal-04502839v1

Science ouverte et principes FAIR dans un projet de bioinformatique

Thomas Denecker
Journée Science ouverte, Station Biologique de Roscoff, Mar 2023, Roscoff, France. ⟨10.5281/zenodo.7729199⟩
Communication dans un congrès hal-04027046v1
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Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository

Baptiste Rousseau , Véronique Jamilloux , Thomas Denecker , Hélène Chiapello , Ariane Bize
JOBIM 2023, Jun 2023, Nancy, France.
Poster de conférence hal-04139284v1
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The IFB e-Learning Working Group

Hélène Chiapello , Thomas Denecker , Gildas Le Corguillé , Pierre Poulain , Denis Puthier
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France.
Poster de conférence hal-03296617v1
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FAIR_bioinfo : a software perspective of reproducibility of bioinformatics analyses

Thomas Denecker , Céline Hernandez , Claire Toffano-Nioche
Journées Ouvertes de Biologie Informatique et Mathématiques - JOBIM 2020, Jun 2020, Montpellier, France
Poster de conférence hal-03071717v1

Iron homeostasisis in C. glabrata at the transcriptomic level

Youfang Zhou-Li , Thomas Denecker , Karine Budin , Cécile Fairhead , Monique Bolotin Fukuhara
20. Congress of the International Society for Human and Animal Mycology (ISHAM 2018), Jun 2018, Amsterdam, Netherlands. Oxford University Press, Medical Mycology, 56 (Suppl. 2), 230 p., 2018, Abstracts ISHAM 2018 - Supplement
Poster de conférence hal-02734714v1