Skip to Main content
Number of documents


Thomas Denecker

Journal articles8 documents

  • Thomas Denecker, Claire Toffano-Nioche. FAIR_Bioinfo: a turnkey training course and protocol for reproducible computational biology. JOSE - Journal of Open Source Education, Open Journals, 2021, ⟨10.21105/jose.00068⟩. ⟨hal-02880655v2⟩
  • Thomas Denecker, Youfang Zhou li, Cécile Fairhead, Karine Budin, Jean-Michel Camadro, et al.. Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast Candida glabrata. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), ⟨10.1093/nargab/lqaa027⟩. ⟨hal-03100086⟩
  • Djihad Hadjadj, Thomas Denecker, Eva Guérin, Su-Jung Kim, Fabien Fauchereau, et al.. Efficient, quick and easy-to-use DNA replication timing analysis with START-R suite. NAR Genomics and Bioinformatics, Oxford University Press, 2020, 2 (2), ⟨10.1093/nargab/lqaa045⟩. ⟨hal-02929259⟩
  • Gaëlle Lelandais, Thomas Denecker, Camille Garcia, Nicolas Danila, Thibaut Léger, et al.. Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility. BMC Research Notes, BioMed Central, 2019, 12 (1), pp.470. ⟨10.1186/s13104-019-4505-8⟩. ⟨hal-02389332⟩
  • Thomas Denecker, William Durand, Julien Maupetit, Charles Hébert, Jean-Michel Camadro, et al.. Pixel: a content management platform for quantitative omics data. PeerJ, PeerJ, 2019, 7, pp.e6623. ⟨10.7717/peerj.6623⟩. ⟨hal-03100146⟩
  • Thomas Denecker, Gaëlle Lelandais. Empowering the detection of ChIP-seq "basic peaks" (bPeaks) in small eukaryotic genomes with a web user-interactive interface. BMC Research Notes, BioMed Central, 2018, 11 (1), pp.698. ⟨10.1186/s13104-018-3802-y⟩. ⟨hal-02177599⟩
  • Djihad Hadjadj, Su-Jung Kim, Thomas Denecker, Laura Ben Driss, Jean-Charles Cadoret, et al.. A hypothesis-driven approach identifies CDK4 and CDK6 inhibitors as candidate drugs for treatments of adrenocortical carcinomas. Aging, Impact Journals, 2017, 9 (12), pp.2695-2716. ⟨10.18632/aging.101356⟩. ⟨hal-02363044⟩
  • Djihad Hadjadj, Thomas Denecker, Chrystelle Maric, Fabien Fauchereau, Giuseppe Baldacci, et al.. Characterization of the replication timing program of 6 human model cell lines. Genomics Data, Elsevier, 2016, 9, pp.113 - 117. ⟨10.1016/j.gdata.2016.07.003⟩. ⟨hal-01406426⟩

Poster communications3 documents

  • Hélène Chiapello, Thomas Denecker, Gildas Le Corguillé, Pierre Poulain, Denis Puthier, et al.. The IFB e-Learning Working Group. JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France. ⟨hal-03296617⟩
  • Thomas Denecker, Céline Hernandez, Claire Toffano-Nioche. FAIR_bioinfo : a software perspective of reproducibility of bioinformatics analyses. Journées Ouvertes de Biologie Informatique et Mathématiques - JOBIM 2020, Jun 2020, Montpellier, France. ⟨hal-03071717⟩
  • Youfang Zhou-Li, Thomas Denecker, Karine Budin, Cécile Fairhead, Monique Bolotin Fukuhara, et al.. Iron homeostasisis in C. glabrata at the transcriptomic level. 20. Congress of the International Society for Human and Animal Mycology (ISHAM 2018), Jun 2018, Amsterdam, Netherlands. Oxford University Press, Medical Mycology, 56 (Suppl. 2), 230 p., 2018, Abstracts ISHAM 2018 - Supplement. ⟨hal-02734714⟩