Thomas Bigot

Ingénieur de Recherche

Documents

Domaines de recherche

Bio-informatique [q-bio.QM]

Publications

	A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep Bianca Elena Bratuleanu , Cristian Raileanu , Delphine Chrétien , Pablo Guardado-Calvo , Thomas Bigot Microorganisms, 2023, 11 (1), pp.209. ⟨10.3390/microorganisms11010209⟩ Article dans une revue pasteur-04103246v1
	Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses Bianca Elena Bratuleanu , Cristian Răileanu , Amal Bennouna , Delphine Chretien , Thomas Bigot Transboundary and emerging diseases, 2023, 2023, pp.1-14. ⟨10.1155/2023/6661723⟩ Article dans une revue hal-04314227v1
	Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence Sarah Temmam , Tran Cong Tu , Béatrice Regnault , Massimiliano Bonomi , Delphine Chrétien Viruses, 2023, 15 (9), pp.1897. ⟨10.3390/v15091897⟩ Article dans une revue pasteur-04228724v1
	SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19 Sarah Temmam , Xavier Montagutelli , Cécile Herate , Flora Donati , Béatrice Regnault EMBO Reports, 2023, 24 (4), pp.e56055. ⟨10.15252/embr.202256055⟩ Article dans une revue pasteur-04072738v1
	Virus Pop—Expanding Viral Databases by Protein Sequence Simulation Julia Kende , Massimiliano Bonomi , Sarah Temmam , Béatrice Regnault , Philippe Pérot Viruses, 2023, 15 (6), pp.1227. ⟨10.3390/v15061227⟩ Article dans une revue pasteur-04106241v1
	Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar Amal Bennouna , Michael Luciano Tantely , Vololoniaina Raharinosy , Soa Fy Andriamandimby , Thomas Bigot Viruses, 2023, 15 (9), pp.1852. ⟨10.3390/v15091852⟩ Article dans une revue pasteur-04228698v1
	Performance of clinical metagenomics in France: a prospective observational study Jacques Fourgeaud , Béatrice Regnault , Vichita Ok , Nicolas da Rocha , Émilie Sitterlé The Lancet Microbe, 2023, ⟨10.1016/s2666-5247(23)00244-6⟩ Article dans une revue pasteur-04320314v1
	Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery Philippe Pérot , Thomas Bigot , Sarah Temmam , Béatrice Regnault , Marc Eloit Viruses, 2022, 14 (9), pp.1990. ⟨10.3390/v14091990⟩ Article dans une revue pasteur-03773653v1
	Bat coronaviruses related to SARS-CoV-2 and infectious for human cells Sarah Temmam , Khamsing Vongphayloth , Eduard Baquero , Sandie Munier , Massimiliano Bonomi Nature, 2022, 604 (7905), pp.330-336. ⟨10.1038/s41586-022-04532-4⟩ Article dans une revue pasteur-03661247v1
	Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta Bianca Elena Bratuleanu , Sarah Temmam , Sandie Munier , Delphine Chrétien , Thomas Bigot Frontiers in Veterinary Science, 2022, 9, pp.863814. ⟨10.3389/fvets.2022.863814⟩ Article dans une revue pasteur-03661214v1
	SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020 Arnaud Fontanet , Laura Tondeur , Rebecca Grant , Sarah Temmam , Yoann Madec Eurosurveillance, 2021, 26 (15), pp.2001695. ⟨10.2807/1560-7917.es.2021.26.15.2001695⟩ Article dans une revue pasteur-03236257v1
	Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020 Isabelle Sermet-Gaudelus , Sarah Temmam , Christèle Huon , Sylvie Behillil , Vincent Gajdos Eurosurveillance, 2021, 26 (13), pp.2001782. ⟨10.2807/1560-7917.ES.2021.26.13.2001782⟩ Article dans une revue hal-03205795v1
	Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results Béatrice Regnault , Thomas Bigot , Laurence Ma , Philippe Pérot , Sarah Temmam Viruses, 2021, 13 (2), pp.253. ⟨10.3390/v13020253⟩ Article dans une revue pasteur-03152677v1
	The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health Bianca Elena Bratuleanu , Sarah Temmam , Delphine Chrétien , Béatrice Regnault , Philippe Pérot Transboundary and emerging diseases, 2021, ⟨10.1111/tbed.14105⟩ Article dans une revue pasteur-03255650v1
	Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia Philippe Perot , Franck Bielle , Thomas Bigot , Vincent Foulongne , Karine Bolloré Clinical Infectious Diseases, 2021, 72 (10), pp.1701-1708. ⟨10.1093/cid/ciaa308⟩ Article dans une revue pasteur-02863210v1
	RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved] Thomas Bigot , Sarah Temmam , Philippe Pérot , Marc Eloit F1000Research, 2020, 8, pp.530. ⟨10.12688/f1000research.18776.2⟩ Article dans une revue pasteur-02946473v1
	RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles Mathilde Gondard , Sarah Temmam , Elodie Devillers , Valérie Pinarello , Thomas Bigot Viruses, 2020, 12 (2), ⟨10.3390/v12020144⟩ Article dans une revue pasteur-02464664v1
	Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization Sarah Temmam , Vibol Hul , Thomas Bigot , Mael Bessaud , Delphine Chrétien Infection, Genetics and Evolution, 2020, 78, 5 p. ⟨10.1016/j.meegid.2019.104130⟩ Article dans une revue hal-02625131v1
	Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes Lotty Birnberg , Sarah Temmam , Carles Aranda , Florencia Correa-Fiz , Sandra Talavera Viruses, 2020, 12, ⟨10.3390/v12030274⟩ Article dans une revue pasteur-02496954v1
	Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences Thomas Bigot , Julien Guglielmini , Alexis Criscuolo Data in Brief, 2019, 25, pp.104212. ⟨10.1016/j.dib.2019.104212⟩ Article dans une revue pasteur-03265225v1
	Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses Sarah Temmam , Thomas Bigot , Delphine Chrétien , Mathilde Gondard , Philippe Pérot MSphere, 2019, 4 (6), pp.e00645-19. ⟨10.1128/mSphere.00645-19⟩ Article dans une revue pasteur-02355017v1
	Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies Sarah Temmam , Khamsing Vongphayloth , Jeffrey C. Hertz , Ian Sutherland , Bounsavane Douangboubpha Microbiology Resource Announcements, 2019, 8 (46), pp.e00733-19. ⟨10.1128/MRA.00733-19⟩ Article dans une revue pasteur-03240194v1
	Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand Sarah Temmam , Delphine Chrétien , Thomas Bigot , Evelyne Dufour , Stéphane Petres Frontiers in Microbiology, 2019, 10, pp.2315. ⟨10.3389/fmicb.2019.02315⟩ Article dans une revue pasteur-02318851v1
	A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools Sarah Temmam , Vibol Hul , Thomas Bigot , Thavry Hoem , Christopher Gorman Microbiology Resource Announcements, 2019, 8 (15), pp.e01662-18. ⟨10.1128/MRA.01662-18⟩ Article dans une revue pasteur-02263507v1
	Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium Florent Lassalle , Rémi Planel , Simon Penel , David Chapulliot , Valérie Barbe Genome Biology and Evolution, 2017, 9 (12), pp.3413 - 3431. ⟨10.1093/gbe/evx255⟩ Article dans une revue hal-01913841v1
	TPMS: a set of utilities for querying collections of gene trees. Thomas Bigot , Vincent Daubin , Florent Lassalle , Guy Perrière BMC Bioinformatics, 2013, 14, pp.109. ⟨10.1186/1471-2105-14-109⟩ Article dans une revue hal-00972257v1
	Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution Laurent Gueguen , Sylvain Gaillard , Bastien Boussau , Manolo Gouy , Mathieu Groussin Molecular Biology and Evolution, 2013, 30 (8), pp.1745 - 1750. ⟨10.1093/molbev/mst097⟩ Article dans une revue hal-01209906v1

	De nouveaux coronavirus de chauve-souris similaires à SARS-CoV-2 éclairent l'origine de la pandémie de COVID-19 Sarah Temmam , Khamsing Vongphayloth , Eduard Baquero Salazar , Sandie Munier , Massimiliano Bonomi Journées Francophones de Virologie, Apr 2022, Strasbourg, France Communication dans un congrès pasteur-03663296v1
	Une infection antérieure par des coronavirus saisonniers n’empêche pas la COVID-19 chez les enfants. Isabelle Sermet-Gaudelus , Sarah Temmam , Christèle Huon , Sylvie Behillil , Vincent Gajdos Journées Francophones de Virologie, Apr 2021, Montpellier, France Communication dans un congrès pasteur-03663260v1
	Tpms: a Tree Pattern-matching Utility for Querying Gene Trees Collections Thomas Bigot , Vincent Daubin , G. Perrière Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2011, Paris, France. pp.111-112 Communication dans un congrès hal-02069428v1

	Virus Pop: Expanding viral databases by protein sequence simulation Julia Kende , Massimiliano Bonomi , Sarah Temmam , Philippe Pérot , Béatrice Regnault International Conference on Clinical Metagenomics 2023, Nov 2023, Genève (Suisse), Switzerland Poster de conférence pasteur-04337999v1
	Microseek: an innovative approach to unraveling clinical metagenomic secrets Thomas Bigot , Philippe Pérot , Sarah Temmam , Béatrice Regnault , Marc Eloit 8th International Conference on Clinical Metagenomics, Nov 2023, Geneva, Switzerland Poster de conférence pasteur-04337913v1
	Necker-Pasteur Clinical Metagenomics: Part 2. Contribution to Pathogen Discovery Philippe Pérot , Béatrice Regnault , Franck Bielle , Jacques Fourgeaud , Éric Troadec 6th International Conference on Clinical Metagenomics, Oct 2021, Geneva, Switzerland. Poster de conférence pasteur-03467165v1
	Identification d’un nouvel arbovirus neurotrope en France : le virus Umbre Philippe Pérot , Franck Bielle , Thomas Bigot , Vincent Foulongne , Karine Bolloré XXIIIèmes Journées Francophones de Virologie, Apr 2021, Montpellier, France Poster de conférence pasteur-03467121v1
	Role of pathogens in life-threatening encephalitides analyzed by untargeted transcriptomic analysis of pathological brain tissues Philippe Perot , Danielle Seilhean , Franck Bielle , Delphine Chrétien , Thomas Bigot 3rd International Conference on Clinical Metagnomics, Oct 2018, Genève, Switzerland. Poster de conférence pasteur-01887124v1

	Coronaviruses with a SARS-CoV-2-like receptor-binding domain allowing ACE2-mediated entry into human cells isolated from bats of Indochinese peninsula Sarah Temmam , Khamsing Vongphayloth , Eduard Baquero Salazar , Sandie Munier , Massimiliano Bonomi 2021 Pré-publication, Document de travail hal-03417488v1

	Recherche automatisée de motifs dans les arbres phylogénétiques Thomas Bigot Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Claude Bernard - Lyon I, 2013. Français. ⟨NNT : 2013LYO10085⟩ Thèse tel-01044878v1

Thomas Bigot

Domaines de recherche

Publications

A Search for Tick-Associated, Bronnoya-like Virus Spillover into Sheep

Diversity of Viruses in Ixodes ricinus in Europe including Novel and Potential Arboviruses

Genotype and Phenotype Characterization of Rhinolophus sp. Sarbecoviruses from Vietnam: Implications for Coronavirus Emergence

SARS‐CoV‐2‐related bat virus behavior in human‐relevant models sheds light on the origin of COVID‐19

Virus Pop—Expanding Viral Databases by Protein Sequence Simulation

Comprehensive Characterization of Viral Diversity of Female Mosquitoes in Madagascar

Performance of clinical metagenomics in France: a prospective observational study

Microseek: A Protein-Based Metagenomic Pipeline for Virus Diagnostic and Discovery

Bat coronaviruses related to SARS-CoV-2 and infectious for human cells

Detection of Phenuiviridae, Chuviridae Members, and a Novel Quaranjavirus in Hard Ticks From Danube Delta

SARS-CoV-2 infection in schools in a northern French city: a retrospective serological cohort study in an area of high transmission, France, January to April 2020

Prior infection by seasonal coronaviruses, as assessed by serology, does not prevent SARS-CoV-2 infection and disease in children, France, April to June 2020

Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results

The virome of Rhipicephalus, Dermacentor and Haemaphysalis ticks from Eastern Romania includes novel viruses with potential relevance for public health

Identification of Umbre Orthobunyavirus as a Novel Zoonotic Virus Responsible for Lethal Encephalitis in 2 French Patients With Hypogammaglobulinemia

RVDB-prot, a reference viral protein database and its HMM profiles [version 2; peer review: 2 approved]

RNA Viruses of Amblyomma variegatum and Rhipicephalus microplus and Cattle Susceptibility in the French Antilles

Whole genome sequencing and phylogenetic characterization of a novel bat-associated picornavirus-like virus with an unusual genome organization

Viromics on Honey-Baited FTA Cards as a New Tool for the Detection of Circulating Viruses in Mosquitoes

Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

Insights into the Host Range, Genetic Diversity, and Geographical Distribution of Jingmenviruses

Six Nearly Complete Genome Segments of a Novel Reovirus Identified in Laotian Batflies

Monitoring Silent Spillovers Before Emergence: A Pilot Study at the Tick/Human Interface in Thailand

A Novel Polycipiviridae Virus Identified in Pteropus lylei Stools

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

TPMS: a set of utilities for querying collections of gene trees.

Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution

De nouveaux coronavirus de chauve-souris similaires à SARS-CoV-2 éclairent l'origine de la pandémie de COVID-19

Une infection antérieure par des coronavirus saisonniers n’empêche pas la COVID-19 chez les enfants.

Tpms: a Tree Pattern-matching Utility for Querying Gene Trees Collections

Virus Pop: Expanding viral databases by protein sequence simulation

Microseek: an innovative approach to unraveling clinical metagenomic secrets

Necker-Pasteur Clinical Metagenomics: Part 2. Contribution to Pathogen Discovery

Identification d’un nouvel arbovirus neurotrope en France : le virus Umbre

Role of pathogens in life-threatening encephalitides analyzed by untargeted transcriptomic analysis of pathological brain tissues

Coronaviruses with a SARS-CoV-2-like receptor-binding domain allowing ACE2-mediated entry into human cells isolated from bats of Indochinese peninsula

Recherche automatisée de motifs dans les arbres phylogénétiques