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Whole exome sequencing of relapsed/refractory patients expands the repertoire of somatic mutations in diffuse large B-cell lymphoma

 Sylvain Mareschal , Sydney Dubois , Pierre-Julien Viailly , Philippe Bertrand , Elodie Bohers , et al.
Genes, Chromosomes & Cancer, 2016, 55 (3), pp.251-267. ⟨10.1002/gcc.22328⟩
Article dans une revue istex hal-01237083v1

Pattern matching and text compression algorithms

 Maxime Crochemore , Thierry Lecroq
ACM Computing Surveys, 1996, 28 (1), pp.39-41
Article dans une revue hal-00619581v1

Pattern matching and text compression algorithms

 Maxime Crochemore , Thierry Lecroq
B. Tucker Allen. The Computer Science and Engineering Handbook, CRC Press, pp.162-202, 1997
Chapitre d'ouvrage hal-00620795v1
Image document

Sequential Exact String Matching

 Maxime Crochemore , Thierry Lecroq
Ming-Yang Kao. Encyclopedia of Algorithms, Springer Verlag, pp.824-826, 2008
Chapitre d'ouvrage hal-00470105v1

Computing Abelian Periods in Words

 Gabriele Fici , Thierry Lecroq , Arnaud Lefebvre , Elise Prieur-Gaston
SeqBi11 - Workshop Algorithmique, combinatoire du texte et applications en bio-informatique, 2011, Rennes, France
Communication dans un congrès hal-00560414v1
Image document

Towards modeling alternating patterns through inter-notes relations

 Perrine Vantalon , Mathieu Giraud , Richard Groult , Thierry Lecroq
23rd International Society for Music Information Retrieval Conference (ISMIR 2022), Late-Breaking Demo Session, Dec 2022, Bangalore, India. , pp.LV10
Poster de conférence hal-03951420v1

Efficient validation and construction of border arrays

 Jean-Pierre Duval , Thierry Lecroq , Arnaud Lefebvre
J. Daykin, M. Mohamed and K. Steinhoefel. London Algorithmics and Stringology 2006, King's College London Publications, pp.135-147, 2007, Texts in Algorithms
Chapitre d'ouvrage hal-00470107v1

A Four-Stage Algorithm for Updating a Burrows-Wheeler Transform

 Mikael Salson , Thierry Lecroq , Martine Léonard , Laurent Mouchard
Theoretical Computer Science, 2009, 43 (10), pp.4350-4359
Article dans une revue hal-00469113v1

Findings from the Section on Bioinformatics and Translational Informatics

 Hélène Dauchel , Thierry Lecroq
IMIA Yearbook of Medical Informatics, 2017, 26 (01), pp.188 - 191. ⟨10.15265/IY-2016-050⟩
Article dans une revue hal-01897132v1

Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform

 Jacqueline W. Daykin , Richard Groult , Yannick Guesnet , Thierry Lecroq , Arnaud Lefebvre , et al.
2018
Pré-publication, Document de travail hal-01956003v1

A survey of string orderings and their application to the Burrows–Wheeler transform

 Jacqueline Daykin , Richard Groult , Yannick Guesnet , Thierry Lecroq , Arnaud Lefebvre , et al.
Theoretical Computer Science, 2018, 710, pp.52 - 65. ⟨10.1016/j.tcs.2017.02.021⟩
Article dans une revue hal-01894859v1

Binary block order Rouen transform

 J. W. Daykin , Richard Groult , Guesnet Yannick , Thierry Lecroq , Arnaud Lefebvre , et al.
Theoretical Computer Science, 2016, ⟨10.1016/j.tcs.2016.05.028⟩
Article dans une revue hal-01323759v1

Fast string matching algorithms

 Thierry Lecroq
London Algorithms Workshop, 2007, London, United Kingdom
Communication dans un congrès hal-00516714v1

On-line construction of compact suffix vectors and maximal repeats

 Elise Prieur , Thierry Lecroq
Journées montoises, 2006, Rennes, France. pp.311-322
Communication dans un congrès hal-00469601v1
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Querying Large Read Collections in Main Memory: A Versatile data Structure

 Nicolas Philippe , Mikael Salson , Thierry Lecroq , Martine Léonard , Thérèse Commes , et al.
BMC Bioinformatics, 2011, 12, pp.242-258. ⟨10.1186/1471-2105-12-242⟩
Article dans une revue lirmm-00632958v1

Sequence Indexing

 Thierry Lecroq , Mikaël Salson
From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics, 1, Wiley, 2022, 9781394169641. ⟨10.1002/9781394169641.ch2⟩
Chapitre d'ouvrage hal-03788611v1

Speeding up two string-matching algorithms

 Maxime Crochemore , Artur Czumaj , Leszek Gąsieniec , Stefan Jarominek , Thierry Lecroq , et al.
9th International Symposium on Theoretical Aspects of Computer Science (STACS 1992), 1992, France. pp.589-600
Communication dans un congrès hal-00619972v1

Algorithms on Strings

 Maxime Crochemore , Christophe Hancart , Thierry Lecroq
Cambridge University Press, pp.392, 2007
Ouvrages hal-00470109v1

Speeding up two string-matching algorithms

 Maxime Crochemore , Artur Czumaj , Leszek Gąsieniec , Stefan Jarominek , Thierry Lecroq , et al.
Algorithmica, 1994, 12 (4-5), pp.247-267
Article dans une revue hal-00619553v1

A novel knowledge-discovering approach from massive data

 Heni Bouhamed , Ahmed-Riadh Rebai , Thierry Lecroq , Maher Jaoua
2011
Autre publication scientifique hal-00627525v1

Efficient Pattern Matching on Binary Strings

 Simone Faro , Thierry Lecroq
2008
Autre publication scientifique hal-00470113v1

Mapping biomedical terminologies using natural language processing tools and umls : mapping the orphanet thesaurus to the mesh

 Tayeb Merabti , Michel Joubert , Thierry Lecroq , A. Rath , Stéfan Darmoni
Ingénierie et Recherche Biomédicale/BioMedical Engineering and Research, 2010, 31 (4), pp.221-225
Article dans une revue hal-00560834v1
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ELECTOR: EvaLuation of Error Correction Tools for lOng Reads

 Lolita Lecompte , Camille Marchet , Pierre Morisse , Antoine Limasset , Pierre Peterlongo , et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. pp.1-2
Poster de conférence hal-01929900v1
Image document

Read indexing

 Nicolas Philippe , Mikael Salson , Thérèse Commes , Thierry Lecroq , Martine Léonard , et al.
EMBnet.journal, 2011, 17 (Supplement B), pp.1. ⟨10.14806/ej.17.B.289⟩
Article dans une revue lirmm-00757983v1

Elucidation of the morphogenesis mechanisms in the diatom P. tricornutum using RNA sequencing technology

 Clément Ovide , Marie-Christine Kiefer-Meyer , Wassim Tair , Caroline Bérard , Nicolas Vergne , et al.
17ième Journées de l’Ecole Doctorale NBISE, Apr 2014, Le Havre, France
Communication dans un congrès hal-02109139v1

Multiple String Matching

 Maxime Crochemore , Thierry Lecroq
Encyclopedia of Algorithms, Springer New York, pp.1378-1382, 2016
Chapitre d'ouvrage hal-01956006v1

Practical fast on-line exact pattern matching algorithms for highly similar sequences

 Nadia Ben Nsira , Thierry Lecroq , Élise Prieur-Gaston
Proceedings of the IEEE BIBM 2018 Workshop on Data Mining from Genomic Variants and Its Application to Genome-wide Analysis, Dec 2018, Madrid, Spain. pp.1772--1777, ⟨10.1109/BIBM.2018.8621319⟩
Communication dans un congrès hal-01956537v1

UMI-Varcal: A Low-Frequency Variant Caller for UMI-Tagged Paired-End Sequencing Data

 Vincent Sater , Pierre-Julien Viailly , Thierry Lecroq , Élise Prieur-Gaston , Élodie Bohers , et al.
Charlotte Ng; Salvatore Piscuoglio. Variant Calling : Methods and Protocols, 2493, Springer US, pp.235-245, 2022, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2293-3_14⟩
Chapitre d'ouvrage hal-03747876v1

HG-CoLoR: Hybrid Graph for the error Correction of Long Reads

 Pierre Morisse , Thierry Lecroq , Arnaud Lefebvre
Actes des Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. pp.67--74
Communication dans un congrès hal-01956554v1

Algorithms for Indexing Highly Similar DNA Sequences

 Nadia Ben Nsira , Thierry Lecroq , Mourad Elloumi
Algorithms for Next-Generation Sequencing Data, Springer International Publishing, pp.3-39, 2017
Chapitre d'ouvrage hal-01955999v1
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