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Deep learning: basics and convolutional neural networks (CNN)

 Maria Vakalopoulou , Stergios Christodoulidis , Ninon Burgos , Olivier Colliot , Vincent Lepetit
Olivier Colliot. Machine Learning for Brain Disorders, Springer, 2023, ⟨10.1007/978-1-0716-3195-9_3⟩
Chapitre d'ouvrage hal-03957224v2
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U-ReSNet: Ultimate Coupling of Registration and Segmentation with Deep Nets

 Théo Estienne , Maria Vakalopoulou , Stergios Christodoulidis , Enzo Battistella , Marvin Lerousseau , et al.
MICCAI 2019: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019, MICCAI, Oct 2019, Shenzhen, China. pp.310-319, ⟨10.1007/978-3-030-32248-9_35⟩
Communication dans un congrès hal-02365899v2
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On the detection of Out-Of-Distribution samples in Multiple Instance Learning

 Loïc Le Bescond , Maria Vakalopoulou , Stergios Christodoulidis , Fabrice Andre , Hugues Talbot
Out Of Distribution Generalization in Computer Vision, Oct 2023, Paris, France
Communication dans un congrès hal-04337462v2
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Linear and Deformable Image Registration with 3D Convolutional Neural Networks

 Stergios Christodoulidis , Mihir Sahasrabudhe , Maria Vakalopoulou , Guillaume Chassagnon , Marie-Pierre Revel , et al.
Reconstruction and Analysis of Moving Body Organs, 21th International Conference on Medical Image Computing and Computer Assisted Intervention 2018, Sep 2018, Grenada, Spain
Communication dans un congrès hal-01935607v1

Deep Learning for the Earth Sciences

 Maria Vakalopoulou , Stergios Christodoulidis , Mihir Sahasrabudhe , Nikos Paragios
Deep Learning for the Earth Sciences: A Comprehensive Approach to Remote Sensing, Climate Science, and Geosciences, 1, Wiley, 2021, ⟨10.1002/9781119646181.ch9⟩
Chapitre d'ouvrage hal-03539417v1
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Dosiomics-Based Prediction of Radiation-Induced Valvulopathy after Childhood Cancer

 Stefania Chounta , Rodrigue S. Allodji , Maria Vakalopoulou , Mahmoud Bentriou , Duyen Thi Do , et al.
Cancers, 2023, 15 (12), ⟨10.3390/cancers15123107⟩
Article dans une revue hal-04191649v1
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Image Registration of Satellite Imagery with Deep Convolutional Neural Networks

 Maria Vakalopoulou , Stergios Christodoulidis , Mihir Sahasrabudhe , Stavroula Mougiakakou , Nikos Paragios
IGARSS 2019 - 2019 IEEE International Geoscience and Remote Sensing Symposium, Jul 2019, Yokohama, France. pp.4939-4942, ⟨10.1109/IGARSS.2019.8898220⟩
Communication dans un congrès hal-02422555v1
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Unsupervised Nuclei Segmentation using Spatial Organization Priors

 Loïc Le Bescond , Marvin Lerousseau , Ingrid Garberis , Fabrice André , Stergios Christodoulidis , et al.
MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.325-335
Communication dans un congrès hal-03644463v2
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Hyper-AdaC: Adaptive clustering-based hypergraph representation of whole slide images for survival analysis

 Hakim Benkirane , Maria Vakalopoulou , Stergios Christodoulidis , Ingrid-Judith Garberis , Stefan Michiels , et al.
ML4H 2022 - Machine Learning for Health, Nov 2022, New Orelans, France. pp.405-418
Communication dans un congrès hal-04330534v1
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Deep Learning-Based Concurrent Brain Registration and Tumor Segmentation

 Théo Estienne , Marvin Lerousseau , Maria Vakalopoulou , Emilie Alvarez Andres , Enzo Battistella , et al.
Frontiers in Computational Neuroscience, 2020, Multimodal Brain Tumor Segmentation and Beyond, ⟨10.3389/fncom.2020.00017⟩
Article dans une revue hal-02974826v1
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Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment

 Safae Terrisse , Lisa Derosa , Valerio Iebba , François Ghiringhelli , Ines Vaz-Luis , et al.
Cell Death and Differentiation, 2021, 28 (9), pp.2778-2796. ⟨10.1038/s41418-021-00784-1⟩
Article dans une revue hal-03681977v1
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AI-driven quantification, staging and outcome prediction of COVID-19 pneumonia

 Guillaume Chassagnon , Maria Vakalopoulou , Enzo Battistella , Stergios Christodoulidis , Trieu-Nghi Hoang-Thi , et al.
Medical Image Analysis, 2021, 67, pp.101860. ⟨10.1016/j.media.2020.101860⟩
Article dans une revue hal-03133234v1
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Unsupervised Multistep Deformable Registration of Remote Sensing Imagery Based on Deep Learning

 Maria Papadomanolaki , Stergios Christodoulidis , Konstantinos Karantzalos , Maria Vakalopoulou
Remote Sensing, 2021, 13 (7), ⟨10.3390/rs13071294⟩
Article dans une revue hal-03538150v1
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Structured State Space Models for Multiple Instance Learning in Digital Pathology

 Leo Fillioux , Joseph Boyd , Maria Vakalopoulou , Paul-Henry P.-H. Cournède , Stergios Christodoulidis
MICCAI 2023, Oct 2023, Vancouver, Canada. ⟨10.1007/978-3-031-43907-0_57⟩
Communication dans un congrès hal-04331431v1
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Self-supervised Nuclei Segmentation in Histopathological Images Using Attention

 Mihir Sahasrabudhe , Stergios Christodoulidis , Roberto Salgado , Stefan Michiels , Sherene Loi , et al.
MICCAI 2020 - International Conference on Medical Image Computing and Computer-Assisted Intervention, Oct 2020, Lima, Peru. pp.393-402, ⟨10.1007/978-3-030-59722-1_38⟩
Communication dans un congrès hal-03087006v1
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Region-Guided CycleGANs for Stain Transfer in Whole Slide Images

 Joseph Boyd , Irène Villa , Marie-Christine Mathieu , Eric Deutsch , Nikos Paragios , et al.
MICCAI 2022 - 25th International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2022, Singapore, Singapore. pp.356-365, ⟨10.1007/978-3-031-16434-7_35⟩
Communication dans un congrès hal-03939229v1
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Trastuzumab deruxtecan in metastatic breast cancer with variable HER2 expression: the phase 2 DAISY trial

 Fernanda Mosele , Elise Deluche , Amelie Lusque , Loïc Le Bescond , Thomas Filleron , et al.
Nature Medicine, 2023, 29 (8), pp.2110 - 2120. ⟨10.1038/s41591-023-02478-2⟩
Article dans une revue hal-04187928v1
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