stephanie bocs

Documents

Identifiants chercheurs

stephanie-bocs
0000-0001-7850-4426
IdRef : 089427181

Présentation

Publications

	Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple Amy E. Watson , Baptiste Guitton , Alexandre Soriano , Ronan Rivallan , Hélène Vignes Frontiers in Plant Science, 2024, 15, pp.1352757. ⟨10.3389/fpls.2024.1352757⟩ Article dans une revue hal-04519907v1
	Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin Lison Zunino , Philippe Cubry , Gautier Sarah , Pierre Mournet , Ahmed El Bakkali PLoS ONE, 2024, 19, pp.e0295043. ⟨10.1371/journal.pone.0295043⟩ Article dans une revue hal-04519623v1
	A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly Quentin Piet , Gaetan Droc , William Marande , Gautier Sarah , Stéphanie Bocs Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩ Article dans une revue hal-03678239v1
	Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance Yaodong Yang , Stéphanie Bocs , Haikuo Fan , Alix Armero , Luc Baudouin Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-020-01593-x⟩ Article dans une revue hal-03161818v1
	Three founding ancestral genomes involved in the origin of sugarcane Nicolas Pompidor , Carine Charron , Catherine Hervouet , Stéphanie Bocs , Gaëtan Droc Annals of Botany, 2021, 127 (6), pp.827-840. ⟨10.1093/aob/mcab008⟩ Article dans une revue hal-03273957v1
	RapGreen, an interactive software and web package to explore and analyze phylogenetic trees Jean-François Dufayard , Stéphanie Bocs , Valentin Guignon , Delphine Larivière , Alexandra Louis NAR Genomics and Bioinformatics, 2021, 3 (3), 6 p. ⟨10.1093/nargab/lqab088⟩ Article dans une revue hal-03541670v1
	Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Kevin Ponce , Olga Leon Euphytica, 2020, 216 (1), pp.1-16. ⟨10.1007/s10681-019-2538-7⟩ Article dans une revue hal-02623528v1
	Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Kevin Ponce , Olga Leon Plant Science, 2020, 291, pp.1-13. ⟨10.1016/j.plantsci.2019.110366⟩ Article dans une revue hal-02623158v1
	Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis Shuangyang Wu , Romain Guyot , Stéphanie Bocs , Gaëtan Droc , Fetrina Oktavia International Journal of Molecular Sciences, 2020, 21 (12), pp.4220. ⟨10.3390/ijms21124220⟩ Article dans une revue hal-02923368v1
	Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses Lauriane Hennet , Angélique Berger , Noemi Trabanco , Emeline Ricciuti , Jean-François Dufayard Frontiers in Plant Science, 2020, 11, 19 p. ⟨10.3389/fpls.2020.00224⟩ Article dans une revue hal-02542105v1
	Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii) Julia Soewarto , Chantal Hamelin , Stéphanie Bocs , Pierre Mournet , Hélène Vignes Data in Brief, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩ Article dans une revue hal-02618244v1
	Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids Maider Astorkia , Monica Hernandez , Stéphanie Bocs , Emma Lopez de Armentia , Ana Herrán Plants, 2019, 8 (10), pp.1-19. ⟨10.3390/plants8100377⟩ Article dans une revue hal-02620626v1
	Impact of Austropuccinia psidii in New Caledonia, a biodiversity hotspot J. Soewarto , F. Carriconde , N. Hugot , S. Bocs , Chantal Hamelin Forest Pathology, 2018, 48 (2), pp.1-12. ⟨10.1111/efp.12402⟩ Article dans une revue hal-02626232v1
	Ten steps to get started in Genome Assembly and Annotation Victoria Dominguez del Angel , Erik Hjerde , Lieven Sterck , Salvadors Capella-Gutierrez , Cedric Notredame F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩ Article dans une revue hal-01712874v1
	Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions Alexandre Vaillant , Astrid Honvault , Stéphanie Bocs , Maryline Summo , Garel Makouan-Zi Silvae Genetica, 2018, 67 (1), pp.57-65. ⟨10.2478/sg-2018-0008⟩ Article dans une revue hal-02621313v1
	The genome draft of coconut (Cocos nucifera) Yong Xiao , Pengwei Xu , Haikuo Fan , Luc Baudouin , Wei Xia GigaScience, 2017, 6 (11), ⟨10.1093/gigascience/gix095⟩ Article dans une revue hal-02629356v1
	Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut Alix Armero Villanueva , Luc Baudouin , Stéphanie Bocs , Dominique This PLoS ONE, 2017, 12 (3), ⟨10.1371/journal.pone.0173300⟩ Article dans une revue hal-01605878v1
	The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics Valentin Guignon , Yann Hueber , Mathieu Rouard , Stéphanie Bocs , David Couvin Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩ Article dans une revue hal-02631148v1
	The coffee genome hub: a resource for coffee genomes Alexis Dereeper , Stéphanie Bocs , Mathieu Rouard , Valentin Guignon , Sébastien Ravel Nucleic Acids Research, 2015, 43 (D1), pp.D1028-D1035. ⟨10.1093/nar/gku1108⟩ Article dans une revue hal-03219674v1
	The coffee genome provides insight into the convergent evolution of caffeine biosynthesis France Denoeud , Lorenzo Carretero-Paulet , Alexis Dereeper , Gaëtan Droc , Romain Guyot Science, 2014, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩ Article dans une revue hal-02641562v1
	Three Infectious Viral Species Lying in Wait in the Banana Genome Matthieu Chabannes , Franc-Christophe Baurens , Pierre-Olivier Duroy , Stéphanie Bocs , Stéphanie Vernerey Journal of Virology, 2013, 87 (15), pp.8624-8637. ⟨10.1128/JVI.00899-13⟩ Article dans une revue hal-01313693v1
	Chado controller: advanced annotation management with a community annotation system Valention Guignon , Gaëtan Droc , Michael M. Alaux , Franc-Christophe Baurens , Olivier Garsmeur Bioinformatics, 2012, 28 (7), pp.1054-1056. ⟨10.1093/bioinformatics/bts046⟩ Article dans une revue hal-02651830v1
	The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Angélique d'Hont , France Denoeud , Jean-Marc Aury , Franc-Christophe Baurens , Françoise Carreel Nature, 2012, 488 (7410), pp.213-7. ⟨10.1038/nature11241⟩ Article dans une revue hal-00855582v1
	The genome of Theobroma cacao. Xavier Argout , Jerome Salse , Jean-Marc Aury , Mark J Guiltinan , Gaetan Droc Nature Genetics, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩ Article dans une revue hal-00855922v1
	The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens Éric Duchaud , Christophe Rusniok , Lionel Frangeul , Carmen Buchrieser , Alain Givaudan Nature Biotechnology, 2003, 21 (11), pp.1307-1313. ⟨10.1038/nbt886⟩ Article dans une revue hal-02681540v1
	AMIGene: Annotation of Microbial Genes Gregory Nuel , S. Bocs , S. Cruveiller , D. Vellenet , C. Medigue Progress in Nucleic Acid Research and Molecular Biology, 2003, 13 (31), pp.3723-3726 Article dans une revue hal-00271511v1

	URGI genome annotation system:an integrated system for structural and functional genome annotation Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p Communication dans un congrès hal-01019754v1
	GnpAnnot community annotation system: features, qualifiers, values Stéphanie Sidibe-Bocs , Fabrice Legeai , Gaëtan Droc , Mathieu Rouard , Michael M. Alaux 3. International Biocuration Conference, Apr 2009, Berlin, Germany Communication dans un congrès hal-02758372v1

	Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae) Sonja Siljak-Yakovlev , Olivier Bouchez , Céline Lopez-Roques , Sandra Lepers-Andrzejewski , Laurent Bourgois Plant Genomics and Gene Editing Congress: Europe, Apr 2022, La Hague, Netherlands. 2022 Poster de conférence hal-04343958v1
	Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting Delphine Larivière , David Couvin , Jonathan Lorenzo , Valentin Guignon , Mathieu Rouard JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 437 p., 2016, JOBIM 2016 Poster de conférence hal-01595092v1
	South Green bioinformatics platform: Update 2015 A. Armero , Franc-Christophe Baurens , Stephanie Bocs , A. Breil , Frédéric F. de Lamotte 3. Plant Genomics Congress, May 2015, Londres, United Kingdom. Global Engage, 2015, Plant Genomics Congress Poster de conférence hal-02739966v1
	Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques Jonathan Lorenzo , Delphine Larivière , Jean-François Dufayard , Dominique This , Stéphanie Bocs JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. Université d'Auvergne, 2015 Poster de conférence hal-01222440v1

	(Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries Stéphanie Bocs Autre [q-bio.OT]. Université Pierre et Marie Curie - Paris VI, 2004. Français. ⟨NNT : ⟩ Thèse tel-00008296v1

stephanie bocs

Présentation

Publications

Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple

Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin

A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance

Three founding ancestral genomes involved in the origin of sugarcane

RapGreen, an interactive software and web package to explore and analyze phylogenetic trees

Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers

Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq

Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis

Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses

Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii)

Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids

Impact of Austropuccinia psidii in New Caledonia, a biodiversity hotspot

Ten steps to get started in Genome Assembly and Annotation

Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions

The genome draft of coconut (Cocos nucifera)

Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut

The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

The coffee genome hub: a resource for coffee genomes

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

Three Infectious Viral Species Lying in Wait in the Banana Genome

Chado controller: advanced annotation management with a community annotation system

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.

The genome of Theobroma cacao.

The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens

AMIGene: Annotation of Microbial Genes

URGI genome annotation system:an integrated system for structural and functional genome annotation

GnpAnnot community annotation system: features, qualifiers, values

Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae)

Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting

South Green bioinformatics platform: Update 2015

Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques

(Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries