CV S. Bocs

Nicolas Pompidor, Carine Charron, Catherine Hervouet, Stéphanie Bocs, Gaëtan Droc, et al.. Three founding ancestral genomes involved in the origin of sugarcane. Annals of Botany, Oxford University Press (OUP), 2021, 127 (6), pp.827-840. ⟨10.1093/aob/mcab008⟩. ⟨hal-03273957⟩

Yaodong Yang, Stéphanie Bocs, Haikuo Fan, Alix Armero, Luc Baudouin, et al.. Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance. Communications Biology, Nature Publishing Group, 2021, 4 (1), ⟨10.1038/s42003-020-01593-x⟩. ⟨hal-03161818⟩

Jean-François Dufayard, Stéphanie Bocs, Valentin Guignon, Delphine Larivière, Alexandra Louis, et al.. RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. NAR Genomics and Bioinformatics, Oxford University Press, 2021, 3 (3), 6 p. ⟨10.1093/nargab/lqab088⟩. ⟨hal-03541670⟩

Maider Astorkia, Monica Hernandez, Stéphanie Bocs, Kevin Ponce, Olga Leon, et al.. Detection of significant SNP associated with production and oil quality traits in interspecific oil palm hybrids using RARSeq. Plant Science, Elsevier, 2020, 291, pp.1-13. ⟨10.1016/j.plantsci.2019.110366⟩. ⟨hal-02623158⟩

Maider Astorkia, Monica Hernandez, Stéphanie Bocs, Kevin Ponce, Olga Leon, et al.. Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers. Euphytica, 2020, 216 (1), pp.1-16. ⟨10.1007/s10681-019-2538-7⟩. ⟨hal-02623528⟩

Lauriane Hennet, Angélique Berger, Noemi Trabanco, Emeline Ricciuti, Jean-François Dufayard, et al.. Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses. Frontiers in Plant Science, Frontiers, 2020, 11, 19 p. ⟨10.3389/fpls.2020.00224⟩. ⟨hal-02542105⟩

Shuangyang Wu, Romain Guyot, Stéphanie Bocs, Gaëtan Droc, Fetrina Oktavia, et al.. Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis. International Journal of Molecular Sciences, MDPI, 2020, 21 (12), pp.4220. ⟨10.3390/ijms21124220⟩. ⟨hal-02923368⟩

Julia Soewarto, Chantal Hamelin, Stéphanie Bocs, Pierre Mournet, Hélène Vignes, et al.. Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii). Data in Brief, Elsevier, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩. ⟨hal-02618244⟩

Maider Astorkia, Monica Hernandez, Stéphanie Bocs, Emma Lopez de Armentia, Ana Herrán, et al.. Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids. Plants, MDPI, 2019, 8 (10), pp.1-19. ⟨10.3390/plants8100377⟩. ⟨hal-02620626⟩

Alexandre Vaillant, Astrid Honvault, Stéphanie Bocs, Maryline Summo, Garel Makouan-Zi, et al.. Genetic effect in leaf and xylem transcriptome variations among Eucalyptus urophylla x grandis hybrids in field conditions. Silvae Genetica, Walter De Gruyter, 2018, 67 (1), pp.57-65. ⟨10.2478/sg-2018-0008⟩. ⟨hal-02621313⟩

J. Soewarto, F. Carriconde, N. Hugot, S. Bocs, Chantal Hamelin, et al.. Impact of Austropuccinia psidii in New Caledonia, a biodiversity hotspot. Forest Pathology, Wiley, 2018, 48 (2), pp.1-12. ⟨10.1111/efp.12402⟩. ⟨hal-02626232⟩

Victoria Dominguez del Angel, Erik Hjerde, Lieven Sterck, Salvadors Capella-Gutierrez, Cedric Notredame, et al.. Ten steps to get started in Genome Assembly and Annotation. F1000Research, Faculty of 1000, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩. ⟨hal-01712874⟩

Yong Xiao, Pengwei Xu, Haikuo Fan, Luc Baudouin, Wei Xia, et al.. The genome draft of coconut (Cocos nucifera). GigaScience, Oxford Univ Press, 2017, 6 (11), ⟨10.1093/gigascience/gix095⟩. ⟨hal-02629356⟩

Alix Armero Villanueva, Luc Baudouin, Stéphanie Bocs, Dominique This. Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut. PLoS ONE, Public Library of Science, 2017, 12 (3), ⟨10.1371/journal.pone.0173300⟩. ⟨hal-01605878⟩

Valentin Guignon, Yann Hueber, Mathieu Rouard, Stéphanie Bocs, David Couvin, et al.. The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics. Current Plant Biology, Elsevier, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩. ⟨hal-02631148⟩

Alexis Dereeper, Stéphanie Bocs, Mathieu Rouard, Valentin Guignon, Sébastien Ravel, et al.. The coffee genome hub: a resource for coffee genomes. Nucleic Acids Research, Oxford University Press, 2015, 43 (D1), pp.D1028-D1035. ⟨10.1093/nar/gku1108⟩. ⟨hal-03219674⟩

France Denoeud, Lorenzo Carretero-Paulet, Alexis Dereeper, Gaëtan Droc, Romain Guyot, et al.. The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, American Association for the Advancement of Science (AAAS), In press, 345 (6201), pp.1181-1184. ⟨10.1126/science.1255274⟩. ⟨hal-02641562⟩

Matthieu Chabannes, Franc-Christophe Baurens, Pierre-Olivier Duroy, Stéphanie Bocs, Stéphanie Vernerey, et al.. Three Infectious Viral Species Lying in Wait in the Banana Genome. Journal of Virology, American Society for Microbiology, 2013, 87 (15), pp.8624-8637. ⟨10.1128/JVI.00899-13⟩. ⟨hal-01313693⟩

Valention Guignon, Gaëtan Droc, Michael Alaux, Franc-Christophe Baurens, Olivier Garsmeur, et al.. Chado controller: advanced annotation management with a community annotation system. Bioinformatics, Oxford University Press (OUP), 2012, 28 (7), pp.1054-1056. ⟨10.1093/bioinformatics/bts046⟩. ⟨hal-02651830⟩

Angélique d'Hont, France Denoeud, Jean-Marc Aury, Franc-Christophe Baurens, Françoise Carreel, et al.. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants.. Nature, Nature Publishing Group, 2012, 488 (7410), pp.213-7. ⟨10.1038/nature11241⟩. ⟨hal-00855582⟩

Xavier Argout, Jerome Salse, Jean-Marc Aury, Mark J Guiltinan, Gaetan Droc, et al.. The genome of Theobroma cacao.. Nature Genetics, Nature Publishing Group, 2011, 43 (2), pp.101-8. ⟨10.1038/ng.736⟩. ⟨hal-00855922⟩

Gregory Nuel, S. Bocs, S. Cruveiller, D. Vellenet, C. Medigue. AMIGene: Annotation of Microbial Genes. Progress in Nucleic Acid Research and Molecular Biology, 2003, 13 (31), pp.3723-3726. ⟨hal-00271511⟩

Éric Duchaud, Christophe Rusniok, Lionel Frangeul, Carmen Buchrieser, Alain Givaudan, et al.. The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens. Nature Biotechnology, Nature Publishing Group, 2003, 21 (11), pp.1307-1313. ⟨10.1038/nbt886⟩. ⟨hal-02681540⟩

Joelle Amselem, Michael Alaux, Nathalie Choisne, Nicolas Lapalu, Baptiste Brault, et al.. URGI genome annotation system:an integrated system for structural and functional genome annotation. 12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p. ⟨hal-01019754⟩

Stéphanie Sidibe-Bocs, Fabrice Legeai, Gaëtan Droc, Mathieu Rouard, Michael Alaux, et al.. GnpAnnot community annotation system: features, qualifiers, values. 3. International Biocuration Conference, Apr 2009, Berlin, Germany. ⟨hal-02758372⟩

Delphine Larivière, David Couvin, Jonathan Lorenzo, Valentin Guignon, Mathieu Rouard, et al.. Comparative genomics of gene families in relation with metabolic pathways for gene candidates highlighting. JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. 437 p., 2016, JOBIM 2016. ⟨hal-01595092⟩

A. Armero, Franc-Christophe Baurens, Stephanie Bocs, A. Breil, Frederic de Lamotte Guéry, et al.. South Green bioinformatics platform: Update 2015. 3. Plant Genomics Congress, May 2015, Londres, United Kingdom. Global Engage, 2015, Plant Genomics Congress. ⟨hal-02739966⟩

Jonathan Lorenzo, Delphine Larivière, Jean-François Dufayard, Dominique This, Stéphanie Bocs. Application du système GenFam à la réponse au stress des plantes : intégration de l'identification d'éléments cis spécifiques. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. Université d'Auvergne, 2015. ⟨hal-01222440⟩

Stéphanie Bocs. (Ré)annotation de génomes procaryotes complets - Exploration de groupes de gènes chez les bactéries. Autre [q-bio.OT]. Université Pierre et Marie Curie - Paris VI, 2004. Français. ⟨tel-00008296⟩