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Stephane Guindon
42
Documents
Affiliations actuelles
- 1100627
Identifiants chercheurs
stephane-guindon- Google Scholar : https://scholar.google.co.nz/citations?hl=en&user=kvrvJccAAAAJ&view_op=list_works
- IdRef : 078807824
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0000-0002-3665-8096
Présentation
I design probabilistic models of evolution and algorithms to infer their parameters from the analysis of molecular, fossil and/or spatial data. I created and am still developping the software package \[PhyML\](https://github.com/stephaneguindon/phyml) (for Phylogenetics through Maximum Likelihood) which serves as a basis to implement my research outputs.
Trained as a biologist/statistician, I am working as a CNRS research scientist in the computer science department of the \[LIRMM\](https://www.lirmm.fr/equipes/MAB/) in Montpellier, France. I was also lucky to work for the \[Department of Statistics\](https://www.auckland.ac.nz/en/science/about-the-faculty/department-of-statistics.html) at the University of Auckland between 2007 and 2015.
#### Miscellaneous
Associate editor for Systematic Biology and BMC Evolutionary Biology. Scientific head of the ATGC platform. Co-chair and organizer of the annual conference "Mathematical and Computational Evolution". Served as member of the council for the Society of Systematic Biologists (until 2016). PI on ANR grant GENOSPACE (2016-2021) and Royal Society of New Zealand Marsden grant (2008-2011)
Domaines de recherche
Bio-informatique [q-bio.QM]
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E-Biothon : Une plate-forme pour accélérer les recherches en biologie, santé et environnementJournées SUCCES 2013, Groupe d'Interet Scientifique (GIS). FRA., Nov 2013, Paris, France
Communication dans un congrès
hal-00927495v1
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Modèles et méthodes pour l’évolution biologiqueiSTE Edition, 330 p., 2022, 9781789480696
Ouvrages
lirmm-03766511v1
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Arbres : combinatoire et modèlesModèles et méthodes pour l’évolution biologique, iSTE Edition, pp.7-32, 2022, 9781789480696. ⟨10.51926/ISTE.9069.ch1⟩
Chapitre d'ouvrage
hal-03485566v1
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Numerical Optimization Techniques in Maximum Likelihood Tree InferenceTandy Warnow. Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, 29, Springer, pp.21-38, 2019, Computational Biology (COBO), 978-3-030-10837-3. ⟨10.1007/978-3-030-10837-3_2⟩
Chapitre d'ouvrage
pasteur-02405302v1
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Estimating maximum likelihood phylogenies with PhyMLDavid Posada. Bioinformatics for DNA Sequence Analysis, 537, Springer Protocols, pp.113-137, 2009, Methods in Molecular Biology, ⟨10.1007/978-1-59745-251-9_6⟩
Chapitre d'ouvrage
lirmm-00511830v1
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Modelling the Variability of Evolutionary ProcessesOlivier Gascuel; M. Steel. Reconstructing Evolution: New Mathematical and Computational Advances, II Models of sequence evolution, pp.65-99, 2007, 0199208220
Chapitre d'ouvrage
lirmm-00171206v1
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On the connections between the spatial Lambda-Fleming-Viot model and other processes for analysing geo-referenced genetic data2023
Pré-publication, Document de travail
hal-04289942v1
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SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins[Research Report] CNRS. 2021, pp.1-35
Rapport
hal-03170023v1
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Méthodes et algorithmes pour l'approche statistique en phylogénieBio-Informatique, Biologie Systémique [q-bio.QM]. Université Montpellier II - Sciences et Techniques du Languedoc, 2003. Français. ⟨NNT : ⟩
Thèse
tel-00843343v1
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