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Stephane Guindon

8
Documents
Affiliations actuelles
  • 1100627
Identifiants chercheurs
  • IdHAL stephane-guindon
  • Google Scholar : https://scholar.google.co.nz/citations?hl=en&user=kvrvJccAAAAJ&view_op=list_works
  • IdRef : 078807824
  • ORCID 0000-0002-3665-8096

Présentation

I design probabilistic models of evolution and algorithms to infer their parameters from the analysis of molecular, fossil and/or spatial data. I created and am still developping the software package \[PhyML\](https://github.com/stephaneguindon/phyml) (for Phylogenetics through Maximum Likelihood) which serves as a basis to implement my research outputs. Trained as a biologist/statistician, I am working as a CNRS research scientist in the computer science department of the \[LIRMM\](https://www.lirmm.fr/equipes/MAB/) in Montpellier, France. I was also lucky to work for the \[Department of Statistics\](https://www.auckland.ac.nz/en/science/about-the-faculty/department-of-statistics.html) at the University of Auckland between 2007 and 2015. #### Miscellaneous Associate editor for Systematic Biology and BMC Evolutionary Biology. Scientific head of the ATGC platform. Co-chair and organizer of the annual conference "Mathematical and Computational Evolution". Served as member of the council for the Society of Systematic Biologists (until 2016). PI on ANR grant GENOSPACE (2016-2021) and Royal Society of New Zealand Marsden grant (2008-2011)

Domaines de recherche

Bio-informatique [q-bio.QM]

Publications

43964
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EvoLaps 2 : Advanced phylogeographic visualization

François Chevenet , Denis Fargette , Paul Bastide , Thomas Vitré , Stéphane Guindon
Virus Evolution, 2024, 10 (1), pp.1-9. ⟨10.1093/ve/vead078⟩
Article dans une revue hal-04531387v1
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EvoLaps: a web interface to visualize continuous phylogeographic reconstructions

François Chevenet , Denis Fargette , Stéphane Guindon , Anne-Laure Bañuls
BMC Bioinformatics, 2021, 22 (1), pp.#463. ⟨10.1186/s12859-021-04386-z⟩
Article dans une revue hal-03378825v1
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Sampling bias and model choice in continuous phylogeography: getting lost on a random walk

Antanas Kalkauskas , Umberto Perron , Yuxuan Sun , Nick Goldman , Guy Baele
PLoS Computational Biology, 2021, 17 (1), pp.e1008561. ⟨10.1371/journal.pcbi.1008561⟩
Article dans une revue hal-03064800v2
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Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley

Souley Issaka , Oumar Issiaka I. Traore , Régis Dimitri Skopé Longué , Agnès Pinel-Galzi , Mandev S. Gill
Virus Evolution, 2021, 7 (2), pp.veab072. ⟨10.1093/ve/veab072⟩
Article dans une revue hal-03365735v1
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Rates and Rocks: Strengths and Weaknesses of Molecular Dating Methods

Stéphane Guindon
Frontiers in Genetics, 2020, 11, pp.#526. ⟨10.3389/fgene.2020.00526⟩
Article dans une revue lirmm-03064771v1
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Accounting for ambiguity in ancestral sequence reconstruction

Adrien Oliva , Sylvain Pulicani , Vincent Lefort , Laurent Brehelin , Olivier Gascuel
Bioinformatics, 2019, 35 (21), pp.4290-4297. ⟨10.1093/bioinformatics/btz249⟩
Article dans une revue pasteur-02404399v1
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Accounting for Calibration Uncertainty: Bayesian Molecular Dating as a “Doubly Intractable” Problem

Stéphane Guindon
Systematic Biology, 2018, 67 (4), pp.651-661. ⟨10.1093/sysbio/syy003⟩
Article dans une revue lirmm-01800299v1