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Genome-Wide Analysis of Heteroduplex DNA in Mismatch Repair–Deficient Yeast Cells Reveals Novel Properties of Meiotic Recombination Pathways

 Emmanuelle Martini , Valérie Borde , Matthieu Legendre , Stéphane Audic , Béatrice Regnault , et al.
PLoS Genetics, 2011, 7 (9), pp.e1002305. ⟨10.1371/journal.pgen.1002305⟩
Article dans une revue hal-01258245v1
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Phylogeny.fr: robust phylogenetic analysis for the non-specialist

 Alexis Dereeper , Valentin Guignon , Guillaume Blanc , Stéphane Audic , Sylvain Buffet , et al.
Nucleic Acids Research, 2008, 36 (Web Server), pp.W465-W469. ⟨10.1093/nar/gkn180⟩
Article dans une revue lirmm-00324099v1
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Assessment of Species Diversity and Distribution of an Ancient Diatom Lineage Using a DNA Metabarcoding Approach

 Deepak Nanjappa , Stéphane Audic , Sarah Romac , Wiebe H.C.F. Kooistra , Adriana Zingone
PLoS ONE, 2014, 9 (8), pp.e103810. ⟨10.1371/journal.pone.0103810⟩
Article dans une revue hal-01100874v1

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

 Ramon Massana , Javier Del Campo , Michael E. Sieracki , Stéphane Audic , Ramiro Logares
The International Society of Microbiologial Ecology Journal, 2014, 8 (4), pp.854-866. ⟨10.1038/ismej.2013.204⟩
Article dans une revue hal-01258217v1

Determinants of community structure in the global plankton interactome

 Gipsi Lima-Mendez , Karoline Faust , Nicolas Henry , Johan Decelle , Sébastien Colin , et al.
Science, 2015, 348 (6237), pp.1262073. ⟨10.1126/science.1262073⟩
Article dans une revue hal-01234200v1

Biogeography and diversity of Collodaria (Radiolaria) in the global ocean

 Tristan Biard , Estelle Bigeard , Stéphane Audic , Julie Poulain , Andres Gutierrez-Rodriguez , et al.
The International Society of Microbiologial Ecology Journal, 2017, 11 (6), pp.1331-1344. ⟨10.1038/ismej.2017.12⟩
Article dans une revue hal-03502955v1
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Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

 Ramon Massana , Angélique Gobet , Stéphane Audic , David Bass , Lucie Bittner , et al.
Environmental Microbiology, 2015, 17 (10), pp.4035-4049. ⟨10.1111/1462-2920.12955⟩
Article dans une revue hal-01191731v1
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Diverse molecular signatures for ribosomally ‘active’ Perkinsea in marine sediments

 Aurélie Chambouvet , Cédric Berney , Sarah Romac , Stéphane Audic , Finlay Maguire , et al.
BMC Microbiology, 2014, 14 (1), pp.110. ⟨10.1186/1471-2180-14-110⟩
Article dans une revue hal-01100661v1

The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate (Tiarina sp.)

 Solenn Mordret , Sarah Romac , Nicolas Henry , Sebastien Colin , Margaux Carmichael , et al.
The International Society of Microbiologial Ecology Journal, 2016, 10 (6), pp.1424-1436. ⟨10.1038/ismej.2015.211⟩
Article dans une revue hal-01258214v1
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Patterns of Rare and Abundant Marine Microbial Eukaryotes

 Ramiro Logares , Stéphane Audic , David Bass , Lucie Bittner , Christophe Boutte , et al.
Current Biology - CB, 2014, 24 (8), pp.813-821. ⟨10.1016/j.cub.2014.02.050⟩
Article dans une revue hal-01149637v1
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UniEuk : Time to Speak a Common Language in Protistology!

 Cédric Berney , Andreea Ciuprina , Sara Bender , Juliet Brodie , Virginia Edgcomb , et al.
Journal of Eukaryotic Microbiology, 2017, 64 (3), pp.407-411. ⟨10.1111/jeu.12414⟩
Article dans une revue hal-01512649v1

Insights into global diatom distribution and diversity in the world's ocean

 Shruti Malviya , Eleonora Scalco , Stephane Audic , Flora Vincenta , Alaguraj Veluchamy , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (11), pp.E1516-E1525. ⟨10.1073/pnas.1509523113⟩
Article dans une revue hal-01545320v1

The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii

 Magali Lescot , Stephane Audic , Catherine Robert , Thi Tien Nguyen , Guillaume Blanc , et al.
PLoS Genetics, 2008, 4 (9), pp.e1000185. ⟨10.1371/journal.pgen.1000185⟩
Article dans une revue hal-02978141v1
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Mimivirus Gene Promoters Exhibit an Unprecedented Conservation among all Eukaryotes

 Karsten Suhre , Stéphane Audic , Jean-Michel Claverie
Proceedings of the National Academy of Sciences of the United States of America, 2005, 102, pp.14689-14693. ⟨10.1073/pnas.0506455102⟩
Article dans une revue hal-00004653v2

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding

 Noan Le Bescot , Frédéric Mahé , Stéphane Audic , Céline Dimier , Marie-Jose Garet , et al.
Environmental Microbiology, 2016, 18 (2), pp.609-626. ⟨10.1111/1462-2920.13039⟩
Article dans une revue istex hal-01305586v1

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

 Lucie Bittner , Angélique Gobet , Stéphane Audic , Sarah Romac , Elianne S Egge , et al.
Molecular Ecology, 2013, 22 (1), pp.87-101. ⟨10.1111/mec.12108⟩
Article dans une revue istex hal-00817857v1
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Mimivirus and the emerging concept of "giant" virus

 Jean-Michel Claverie , Hiroyuki Ogata , Stéphane Audic , Chantal Abergel , Pierre-Edouard Fournier , et al.
2005
Pré-publication, Document de travail hal-00005228v1
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Plankton networks driving carbon export in the oligotrophic ocean

 Lionel Guidi , Samuel Chaffron , Lucie Bittner , Damien Eveillard , Abdelhalim Larhlimi , et al.
Nature, 2016, 532, pp.465-470. ⟨10.1038/nature16942⟩
Article dans une revue hal-01275276v1

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

 Micah Dunthorn , Johannes Otto , Simon A. Berger , Alexandros Stamatakis , Frédéric Mahé , et al.
Molecular Biology and Evolution, 2014, 31 (4), pp.993-1009. ⟨10.1093/molbev/msu055⟩
Article dans une revue hal-01258215v1
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454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes

 Elianne Egge , Lucie Bittner , Tom Andersen , Stéphane Audic , Colomban de Vargas , et al.
PLoS ONE, 2013, 8 (9), pp.e74371. ⟨10.1371/journal.pone.0074371⟩
Article dans une revue hal-01258226v1

Insights into the harmful algal flora in northwestern Mediterranean coastal lagoons revealed by pyrosequencing metabarcodes of the 28S rRNA gene

 Daniel Grzebyk , Stéphane Audic , Bernard Lasserre , Eric Abadie , Colomban de Vargas , et al.
Harmful Algae, 2017, 68, pp.1 - 16. ⟨10.1016/j.hal.2017.06.003⟩
Article dans une revue hal-01928761v1
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Global distribution and vertical patterns of a prymnesiophyte–cyanobacteria obligate symbiosis

 Ana M Cabello , Francisco M Cornejo-Castillo , Nicolas Raho , Dolors Blasco , Montserrat Vidal , et al.
The International Society of Microbiologial Ecology Journal, 2016, 10 (3), pp.693-706. ⟨10.1038/ismej.2015.147⟩
Article dans une revue hal-01289124v1
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MicRhoDE: a curated database for the analysis of microbial rhodopsin diversity and evolution

 Dominique Boeuf , Stéphane Audic , Loraine Brillet-Guéguen , Christophe Caron , Christian Jeanthon
Database - The journal of Biological Databases and Curation, 2015, 2015, pp. bav080. ⟨10.1093/database/bav080⟩
Article dans une revue hal-01218501v1
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Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms

 Mutsuo Ichinomiya , Adriana Lopes dos Santos , Priscillia Gourvil , Shinya Yoshikawa , Mitsunobu Kamiya , et al.
The International Society of Microbiologial Ecology Journal, 2016, 10, pp.2419-2434. ⟨10.1038/ismej.2016.38⟩
Article dans une revue hal-01292953v1
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Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

 Ramiro Logares , Stéphane Audic , Sébastien Santini , Massimo C. Pernice , Colomban de Vargas , et al.
The International Society of Microbiologial Ecology Journal, 2012, 6 (10), pp.1823-1833. ⟨10.1038/ismej.2012.36⟩
Article dans une revue hal-01258237v1
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Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

 Peter von Dassow , Uwe John , Hiroyuki Ogata , Ian Probert , El Mahdi Bendif , et al.
The International Society of Microbiologial Ecology Journal, 2015, 9 (6), pp.1365-1377. ⟨10.1038/ismej.2014.221⟩
Article dans une revue hal-01245155v1
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Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

 Peter Von Dassow , Hiroyuki Ogata , Ian Probert , Patrick Wincker , Corinne da Silva , et al.
Genome Biology, 2009, 10 (10), pp.R114. ⟨10.1186/gb-2009-10-10-r114⟩
Article dans une revue hal-01258261v1
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The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates

 Anna Gimmler , Ralf Korn , Colomban de Vargas , Stéphane Audic , Thorsten Stoeck
Scientific Reports, 2016, 6, pp.33555. ⟨10.1038/srep33555⟩
Article dans une revue hal-01369656v1
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PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy

 Johan Decelle , Sarah Romac , Rowena F Stern , El Mahdi Bendif , Adriana Zingone , et al.
Molecular Ecology Resources, 2015, 15 (6), pp.1435-1445. ⟨10.1111/1755-0998.12401⟩
Article dans une revue hal-01149047v1
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Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms

 Dominik Forster , Lucie Bittner , Slim Karkar , Micah Dunthorn , Sarah Romac , et al.
BMC Biology, 2015, 13 (1), pp.16. ⟨10.1186/s12915-015-0125-5⟩
Article dans une revue hal-01144173v1
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