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Heterogeneous Continuous Dynamic Bayesian Networks with Flexible Structure and Inter-Time Segment Information Sharing

Frank Dondelinger , Sophie Lèbre , Dirk Husmeier
ICML, Jun 2010, Haifa, Israel
Communication dans un congrès hal-01812773v1
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ElasticNet avec gestion des interactions et débiaisage

Florent Bascou , Sophie Lèbre , Joseph Salmon
Extraction et Gestion des Connaissances (EGC) - 2021, Jan 2021, Montpellier, France
Communication dans un congrès hal-03238017v1
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Modeling transcription factor combinatorics in promoters and enhancers

Jimmy Vandel , Océane Cassan , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
2018
Pré-publication, Document de travail hal-01821485v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Martins , Sophie Lèbre , José‑juan Lopez‑rubio , et al.
2020
Pré-publication, Document de travail hal-03024898v1
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Probing transcription factor combinatorics in different promoter classes and in enhancers

Jimmy Vandel , Océane Cassan , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
BMC Genomics, 2019, 20 (103), ⟨10.1186/s12864-018-5408-0⟩
Article dans une revue hal-02070201v1

A systematic analysis of the genomic features involved in specificities of transcription factor binding

Raphaël Romero , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , Laurent Brehelin
JOBIM 2021 - 21èmes Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Communication dans un congrès hal-03385869v1
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Classification de campagnes de publicité mobile : Modèle de mélange pour données longitudinales et non gaussiennes

Faustine Bousquet , Christian Lavergne , Sophie Lèbre
2019
Pré-publication, Document de travail hal-02014833v1
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Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

Fabienne Bejjani , Claire Tolza , Mathias Boulanger , Damien Downes , Raphaël Romero , et al.
Nucleic Acids Research, 2021, 49 (5), pp.2488-2508. ⟨10.1093/nar/gkab053⟩
Article dans une revue hal-03253453v1
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The combinatorics of overlapping genes

Sophie Lèbre , Olivier Gascuel
Journal of Theoretical Biology, 2017, 415, pp.90-101. ⟨10.1016/j.jtbi.2016.09.018⟩
Article dans une revue hal-01822866v1
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Inter-time segment information sharing for non-homogeneous dynamic Bayesian networks

Dirk Husmeier , Frank Dondelinger , Sophie Lèbre
NIPS, Dec 2010, VANCOUVER, Canada
Communication dans un congrès hal-01812770v1
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A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO 2

Océane Cassan , Léa‐lou Pimparé , Christian Dubos , Alain Gojon , Liên Bach , et al.
New Phytologist, 2023, 239 (3), pp.992-1004. ⟨10.1111/nph.18788⟩
Article dans une revue hal-04145286v1

From mixture of longitudinal and non-Gaussian advertising data to Click-Through-Rate prediction

Faustine Bousquet , Sophie Lèbre , Christian Lavergne
European Conference on Artificial Intelligence (ECAI), Jun 2020, Santiago de Compostela, Spain
Communication dans un congrès hal-02486184v1
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Optimizing data integration improves Gene Regulatory Network inference in Arabidopsis thaliana

Océane Cassan , Charles Henri Lecellier , Antoine Martin , Laurent Brehelin , Sophie Lèbre
2023
Pré-publication, Document de travail hal-04228523v1
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Systematic analysis of the genomic features involved in the binding preferences of transcription factors

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , et al.
2022
Pré-publication, Document de travail hal-03796420v1
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Identification of long regulatory elements in the genome of Plasmodium falciparum and other eukaryotes

Christophe Menichelli , Vincent Guitard , Rafael Miyazawa Martins , Sophie Lèbre , José Juan Lopez-Rubio , et al.
PLoS Computational Biology, 2021, 17 (4), pp.e1008909. ⟨10.1371/journal.pcbi.1008909⟩
Article dans une revue hal-03253460v1
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Debiasing the Elastic Net for models with interactions

Florent Bascou , Sophie Lèbre , Joseph Salmon
JDS2020, May 2020, Nice, France
Communication dans un congrès hal-02995645v1
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Probing instructions for expression regulation in gene nucleotide compositions

Chloé Bessière , May Taha , Florent Petitprez , Jimmy Vandel , Jean-Michel Marin , et al.
PLoS Computational Biology, 2018, 14 (1), pp.e1005921. ⟨10.1371/journal.pcbi.1005921⟩
Article dans une revue lirmm-01744469v1
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Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite

Océane Cassan , Sophie Lèbre , Antoine Martin
BMC Genomics, 2021, 22 (1), pp.387. ⟨10.1186/s12864-021-07659-2⟩
Article dans une revue hal-03246141v1
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Using positional information for predicting transcription factor binding sites

Raphaël Romero , Christophe Menichelli , Jean-Michel Marin , Sophie Lèbre , Charles-Henri Lecellier , et al.
SMPGD: Statistical Methods for Post Genomic Data, Jan 2019, Barcelone, Spain.
Poster de conférence hal-02068254v1
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User response prediction in mobile advertising

Faustine Bousquet , Khanh Chuong Duong , Christian Lavergne , Sophie Lèbre , Anastasia Lieva
ECML PKDD, Sep 2018, Dublin, Ireland
Poster de conférence hal-02014821v1
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Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana

Oceane Cassan , Lea-Lou Pimpare , Mozzanino Timothy , Cecile Fizames , Sebastien Devidal , et al.
2023
Pré-publication, Document de travail hal-04121939v1