CV Sophie Colombié

Nathalie Lacrampe, Félicie Lopez-Lauri, Raphaël Lugan, Sophie Colombié, Jérôme Olivares, et al.. Regulation of sugar metabolism genes in the N-dependent susceptibility of tomato stems to Botrytis cinerea. Annals of Botany, Oxford University Press (OUP), 2021, 127, pp.143-154. ⟨10.1093/aob/mcaa155⟩. ⟨hal-02954833⟩

Jinliang Chen, Bertrand Beauvoit, Michel Génard, Sophie Colombie, Annick Moing, et al.. Modelling predicts tomatoes can be bigger and sweeter if biophysical factors and transmembrane transports are fine‐tuned during fruit development. New Phytologist, Wiley, 2021, 230, pp.1489-1502. ⟨10.1111/nph.17260⟩. ⟨hal-03152042⟩

Léa Roch, Sylvain Prigent, Holger Klose, Coffi-Belmys Cakpo, Bertrand Beauvoit, et al.. Biomass composition explains fruit relative growth rate and discriminates climacteric from non-climacteric species. Journal of Experimental Botany, Oxford University Press (OUP), 2020, 71 (19), pp.5823-5836. ⟨10.1093/jxb/eraa302⟩. ⟨hal-02904041⟩

Coffi Belmys Cakpo, Gilles Vercambre, Valentina Baldazzi, Léa Roch, Zhanwu Dai, et al.. Model-assisted comparison of sugar accumulation patterns in ten fleshy fruits highlights differences between herbaceous and woody species. Annals of Botany, Oxford University Press (OUP), 2020, 126 (3), pp.455-470. ⟨10.1093/aob/mcaa082⟩. ⟨hal-02749663⟩

Isma Belouah, Camille Bénard, Alisandra Denton, Melisande Blein-Nicolas, Thierry Balliau, et al.. Transcriptomic and proteomic data in developing tomato fruit. Data in Brief, Elsevier, 2020, 28, pp.1-8. ⟨10.1016/j.dib.2019.105015⟩. ⟨hal-02539392⟩

Guillaume Decros, Pierre Baldet, Bertrand Beauvoit, Rebecca Stevens, Amélie Flandin, et al.. Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit. Frontiers in Plant Science, Frontiers, 2019, 10, pp.1-16. ⟨10.3389/fpls.2019.01091⟩. ⟨hal-02619141⟩

Guillaume Decros, Bertrand Beauvoit, Sophie Colombie, Cecile Cabasson, Stéphane Bernillon, et al.. Regulation of Pyridine Nucleotide Metabolism During Tomato Fruit Development Through Transcript and Protein Profiling.. Frontiers in Plant Science, Frontiers, 2019, 10, pp.1201. ⟨10.3389/fpls.2019.01201⟩. ⟨hal-02620533⟩

Isma Belouah, Melisande Blein-Nicolas, Thierry Balliau, Yves Gibon, Michel Zivy, et al.. Peptide filtering differently affects the performances of XIC-based quantification methods. Journal of Proteomics, Elsevier, 2019, 193, pp.131-141. ⟨10.1016/j.jprot.2018.10.003⟩. ⟨hal-02327322⟩

Isma Belouah, Christine Nazaret, Pierre Pétriacq, Sylvain Prigent, Camille Bénard, et al.. Modeling Protein Destiny in Developing Fruit. Plant Physiology, American Society of Plant Biologists, 2019, 180 (3), pp.1709-1724. ⟨10.1104/pp.19.00086⟩. ⟨hal-02327302⟩

Bertrand Beauvoit, Isma Belouah, Nadia Bertin, Coffi Belmys Cakpo, Sophie Colombie, et al.. Putting primary metabolism into perspective to obtain better fruits. Annals of Botany, Oxford University Press (OUP), In press, 122 (1), pp.1-21. ⟨10.1093/aob/mcy057⟩. ⟨hal-02539159⟩

Eric Soubeyrand, Sophie Colombié, Bertrand Beauvoit, Zhanwu Dai, Stéphanie Cluzet, et al.. Constraint-based modeling highlights cell energy, redox status and α-ketoglutarate availability as metabolic drivers for anthocyanin accumulation in grape cells under nitrogen limitation. Frontiers in Plant Science, Frontiers, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00421⟩. ⟨hal-02533089⟩

Christophe Salon, Jean-Christophe Avice, Sophie Colombie, Martine Dieuaide Noubhani, Karine Gallardo-Guerrero, et al.. Fluxomics links cellular functional analyses to whole-plant phenotyping.. Journal of Experimental Botany, Oxford University Press (OUP), 2017, 68 (9), pp.2083-2098. ⟨10.1093/jxb/erx126⟩. ⟨hal-01605024⟩

Sophie Colombié, Bertrand Beauvoit, Christine Nazaret, Camille Bénard, Gilles Vercambre, et al.. Respiration climacteric in tomato fruits elucidated by constraint-based modelling.. New Phytologist, Wiley, 2016, 213 (4), pp.1726-1739. ⟨10.1111/nph.14301⟩. ⟨hal-01445653⟩

Sophie Colombié, Christine Nazaret, Camille Bénard, Benoît Biais, Virginie Mengin, et al.. Modelling central metabolic fluxes by constraint-based optimization reveals metabolic reprogramming of developing Solanum lycopersicum (tomato) fruit.. Plant Journal, Wiley, 2015, 81 (1), pp.24-39. ⟨10.1111/tpj.12685⟩. ⟨hal-01445680⟩

Camille Bénard, Stéphane Bernillon, Benoit Biais, Sonia Osorio, Mickael Maucourt, et al.. Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships.. Journal of Experimental Botany, Oxford University Press (OUP), 2015, 66 (11), pp.3391-404. ⟨10.1093/jxb/erv151⟩. ⟨hal-02641303⟩

Bertrand P Beauvoit, Sophie Colombié, Antoine Monier, Marie-Hélène Andrieu, Benoit Biais, et al.. Model-Assisted Analysis of Sugar Metabolism throughout Tomato Fruit Development Reveals Enzyme and Carrier Properties in Relation to Vacuole Expansion.. The Plant cell, American Society of Plant Biologists (ASPB), 2014, 26 (8), epub ahead of print. ⟨10.1105/tpc.114.127761⟩. ⟨hal-01058814⟩

Benoit Biais, Camille Bénard, Bertrand Beauvoit, Sophie Colombie, Duyên Prodhomme, et al.. Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism.. Plant Physiology, American Society of Plant Biologists, 2014, 164, pp.1204-1221. ⟨10.1104/pp.113.231241⟩. ⟨hal-02639362⟩

Marie Beurton-Aimar, Bertrand Beauvoit, Antoine Monier, Francois Vallee, Martine Dieuaide-Noubhani, et al.. Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells. BMC Systems Biology, BioMed Central, 2011, 5, pp.95. ⟨10.1186/1752-0509-5-95⟩. ⟨hal-00629222⟩

Sophie Colombie, Eric Latrille, Jean-Marie Sablayrolles. Interest of on-line monitoring electrical conductivity during wine fermentation. European Food Research and Technology, Springer Verlag (Germany), 2008, 226 (6), pp.1553-1557. ⟨10.1007/s00217-007-0649-1⟩. ⟨hal-02657621⟩

Sophie Colombie, Sophie Malherbe, Jean-Marie Sablayrolles. Modeling of heat transfer in tanks during wine-making fermentation. Food Control, Elsevier, 2007, 18 (8), pp.953-960. ⟨10.1016/j.foodcont.2006.05.016⟩. ⟨hal-02666308⟩

Sophie Colombie, Eric Latrille, Jean-Marie Sablayrolles. Online estimation of assimilable nitrogen by electrical conductivity measurement during alcoholic fermentation in enological conditions. Journal of Bioscience and Bioengineering, Elsevier, 2007, 103 (3), pp.229-235. ⟨10.1263/jbb.103.229⟩. ⟨hal-02662582⟩

Sophie Colombie, Sophie Malherbe, Jean-Marie Sablayrolles. Modeling alcoholic fermentation in enological conditions: Feasibility and interest. American Journal of Enology and Viticulture, American Society for Enology and Viticulture, 2005, 56 (3), pp.238-245. ⟨hal-02681151⟩

Sophie Colombie, Jean-Marie Sablayrolles. Nicotinic acid controls lactate production by K1-LDH: a Saccharomyces cerevisiae strain expressing a bacterial LDH gene. Journal of Industrial Microbiology and Biotechnology, Springer Verlag, 2004, 31 (5), pp.209-215. ⟨10.1007/s10295-004-0138-5⟩. ⟨hal-02678767⟩

Sophie Colombie, Sylvie Dequin, Jean-Marie Sablayrolles. Control of lactate production by Saccharomyces cerevisiae expressing a bacterial LDH gene. Enzyme and Microbial Technology, Elsevier, 2003, 33 (1), pp.38-46. ⟨10.1016/S0141-0229(03)00082-6⟩. ⟨hal-02673211⟩

Sophie Colombie, R.J. Tweddell, J.S. Condoret, A. Marty. Water activity control: A way to improve the efficiency of continuous lipase esterification. Biotechnology and Bioengineering, Wiley, 1998, 60 (3), pp.362-367. ⟨hal-02690200⟩

J.L. Chen, Bertrand Beauvoit, Sophie Colombie, Léa Roch, Coffi Belmys Cakpo, et al.. An integrated fruit model toolkit: combining fruit biophysical processes with central carbon metabolism. Symposium on Advanced Technologies and Management for Innovative Greenhouses: GreenSys2019, Jun 2019, Angers, France. pp.401-410, ⟨10.17660/ActaHortic.2020.1296.52⟩. ⟨hal-03125090⟩

Bertrand Beauvoit, Sophie Colombie, Razanne Issa, Jean-Pierre Mazat, Christine Nazaret, et al.. HSM a reduced model of Central Carbon Metabolism: a dynamical approach. advances in Systems and Synthetic Biology, Mar 2017, Lyon, France. ⟨hal-01709748⟩

Cecile Cabasson, Sophie Colombie, Bertrand Beauvoit, Christine Nazaret, Camille Benard, et al.. Integrative and predictive biology outside the plant: linking computational tools to fleshy fruit systems. Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. ⟨hal-02739719⟩

Sophie Colombie, Bertrand Beauvoit, Christine Nazaret, Camille Bénard, Cécile Cabasson, et al.. Flux balance modelling in developing tomato fruit: the respiration climacteric as an emergent property. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., May 2016, Montpellier, France. ⟨hal-02740471⟩

Bertrand Beauvoit, Sophie Colombie, Razanne Issa, Jean-Pierre Mazat, Christine Nazaret, et al.. Human-Scale Metabolic Network of Central Carbon Metabolism: application to serine metabolism from glutamine in Cancer Cells. advances in Systems and Synthetic Biology, Mar 2016, Evry, France. ⟨hal-01709760⟩

Sophie Colombie, Bertrand Beauvoit, Dominique Rolin, Stéphane Bernillon, Camille Bénard, et al.. Using metabolomic approaches and modelling of central metabolic to study fleshy fruit quality. 1. International Symposium on Metabolomics in Mexico, Jun 2015, Guadalajara, Mexico. 2 p. ⟨hal-02800371⟩

Clémence de Jaham, Benjamin Thiombiano, Camille Bénard, A.P. Alonso, J.C. Cocuron, et al.. Cellular and subcellular metabolomics reveal changes during tomato leaf development. 9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France. ⟨hal-02740382⟩

Florence Maurier, Clément Frainay, Fabien Jourdan, Sophie Colombie. Reconstruction du réseau métabolique de la tomate. 9. Journées scientifiques du RFMF, Réseau Francophone de Métabolomique et Fluxomique (RFMF). FRA., Jun 2015, Lille, France. ⟨hal-02742882⟩

Camille Bénard, Stéphane Bernillon, Benoit Biais, Sonia Osorio-Algar, Mickael Maucourt, et al.. Using developmental and diurnal compositional changes of tomato to study metabolism. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p. ⟨hal-02793195⟩

Dominique Rolin, Bertrand Beauvoit, Stéphane Bernillon, Camille Bénard, Patricia Ballias, et al.. La métabolomique : un outil de la génomique fonctionnelle au service de la biologie des systèmes. 8e Congrès Jeunes Chercheurs de la SFBV, Société Française de Biologie Végétale (SFBV). FRA., Jun 2014, Tours, France. 1 p. ⟨hal-02801036⟩

Dominique Rolin, Floriant Bellvert, Justine Bertrand-Michel, Cécile Canlet, Richard Cole, et al.. MetaboHUB and RFMF : two tools at the service of metabolomics and fluxomics in France. MERLION Metabolomics Workshop Singapore 2014, Nov 2014, Singapour, Singapore. ⟨hal-02798242⟩

Sophie Colombie, Bertrand Beauvoit, Christine Nazaret, Martine Dieuaide Noubhani, Jean-Pierre Mazat, et al.. Modelling fluxes and metabolic network analysis of developing tomato fruits. Bordeaux Computational Biology and Bioinformatics, Nov 2014, Bordeaux, France. ⟨hal-02796388⟩

Marie Beurton-Aimar, Vu Ngoc Tung Nguyen, Sophie Colombie. Using Topological Analysis to Study Metabolism of Heterotrophic Plant Cell Network. BioNetVisA workshop (join with ECCB conference,, Oct 2014, Strasbourg, France. ⟨hal-02000486⟩

Bertrand P Beauvoit, Sophie Colombié, Jean-Pierre Mazat, Christine Nazaret, Sabine Pérès. Systematic study of a metabolic network. advances in Systems and Synthetic Biology, Mar 2014, Evry, France. 173 p. ⟨hal-01108859⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, B. Colsch, et al.. MetaboHUB: a national infrastructure dedicated to metabolomics and fluxomics. 7. Journées scientifiques du Réseau Français de Métabolomique et de Fluxomique (RFMF), Jun 2013, Amiens, France. ⟨hal-01002241⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, Sophie Colombie, et al.. MetaboHUB: a french infrastructure dedicated to metabolomics and fluxomics. Metabolomics 2013 - 9. Annual conference of the Metabolomics Society, Jul 2013, Glasgow, United Kingdom. ⟨hal-01002247⟩

Dominique Rolin, Alice Agasse, Justine Bertrand-Michel, R. Cole, B. Colsch, et al.. MetaboHUB: une infrastructure nationale au service de la métabolomique. Séance thématique "La métabolomique : son application en recherche pharmaceutique et diagnostique", Académie Nationale de Pharmacie. FRA., Feb 2013, Paris, France. ⟨hal-01002248⟩

Sophie Colombie, Christine Nazaret, Bertrand Beauvoit, Marion Solé, Martine Dieuaide Noubhani, et al.. The tomato fruit development with a constraint-based model. Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. ⟨hal-02804536⟩

Antoine Monier, Sarah Monllor, Marie-Hélène Andrieu, Sophie Colombie, Frédéric Delmas, et al.. Implication of the vacuolar AtPAP26 in the sugars metabolism in Arabidopsis thaliana roots. 5. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Labo/service de l'auteur, Ville service., May 2011, Paris, France. ⟨hal-02749345⟩

Sophie Colombie, Bertrand Beauvoit, Nicolas Parisey, Katia Pianelli, François Vallée, et al.. Elementary mode analysis of the central metabolism of plant cells. 4. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2010, Marseille, France. ⟨hal-02752805⟩

M. Beurton-Aimar, N. Parisey, Francois Vallée, Sophie Colombie. Identification of functional hubs through metabolic networks. 12. International conference on the synthesis and simulation of lifing systems, Aug 2010, Odense, Denmark. ⟨hal-02754488⟩

François Vallée, Sophie Colombie, Bertrand Beauvoit, Nicolas Parisey, Katia Pianelli, et al.. Elementary flux mode analysis of the central metabolism of plant cells. 7. International workshop on Computational Systems Biology, Jun 2010, Luxembourg, Luxembourg. ⟨hal-02752087⟩

Francois Vallee, M. Beurton-Aimar, N. Parisey, Florent Collot, Sophie Colombié. TIM/WIM: A Set of Tools to Interface Modelling in Biology.. European Conference on Object-Oriented Programming, Jul 2009, Genova, Italy. ⟨hal-00629019⟩

Raphael Henri, Katia Pianelli, Marie-Hélène Andrieu, Bertrand Beauvoit, Sophie Colombie, et al.. Mise en place d'une approche de fluxomique dans le fruit de tomate. 3. Journées, Feb 2008, Bordeaux, France. ⟨hal-02757883⟩

Nicolas Parisey, Florent Collot, Raphael Henri, Bertrand Beauvoit, Martine Dieuaide Noubhani, et al.. TIM, une interface de saisie pour les données du métabolisme. 3. Journées scientifiques RFMF, Feb 2008, Bordeaux, France. ⟨hal-02752505⟩

Raphael Henri, Marie-Hélène Andrieu, Sophie Colombie, Philippe Raymond, Dominique Rolin, et al.. Quantification de flux métaboliques dans le fruit de tomate. 2. Journées, Dec 2006, Saint Sauves d'Auvergne, France. ⟨hal-02757225⟩

Léa Roch, Coffi Belmys Cakpo, Catherine Deborde, Mickael Maucourt, Thierry Berton, et al.. Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling. EUROMAR - European Magnetic Resonance Meeting, Jul 2018, Nantes, France. 2018. ⟨hal-02737961⟩

Léa Roch, Coffi Belmys Cakpo, Catherine Deborde, Mickael Maucourt, Thierry Berton, et al.. Primary metabolism investigation of fleshy fruit species using 1H-NMR profiling. -, Jul 2018, Nantes, France. pp.546, 2018. ⟨hal-02539684⟩

Zhanwu Dai, Bertrand Beauvoit, Sophie Colombie, Michel Génard, Gilles Vercambre, et al.. Multiscale Fruit Modeling: integrating biophysical fruit growth with biochemical metabolisms in 10 fruits. 2. Annual Crops in silico Symposium and Workshop, Jun 2017, Oxford, United Kingdom. 2017. ⟨hal-02735987⟩

Isma Belouah, Thierry Balliau, Camille Benard, Bertrand Beauvoit, Sophie Colombie, et al.. The timing of shifts in the transcriptome and proteome in relation to metabolic state during tomato fruit development. Metabolomics 2016. 12. Annual Conference of the Metabolomics Society, Jun 2016, Dublin, Ireland. 2016. ⟨hal-01603579⟩

Angela Machado Vieira, Stéphanie Cluzet, Catherine Deborde, Ghislaine Hilbert, Annick Moing, et al.. Characterization of a plant cell suspension culture of Vitis vinifera: biomass composition assessment before C13-metabolic flux analysis. 10. journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF 2016, May 2016, Montpellier, France. 2016. ⟨hal-02741756⟩

Christine Nazaret, Sophie Colombié, Bertrand Beauvoit, Martine Dieuaide-Noubhani, Jean-Pierre Mazat, et al.. How to optimize metabolites concentrations and fluxes in a metabolic pathway? Backgrounds and Basics. International Study Group for Systems Biology meeting (ISGSB 2016) , Oct 2016, Jena, Germany. ⟨hal-01445608⟩

Stéphane Bernillon, Stéphanie Arrivault, Manuela Guenther, Regina Feil, Patricia Ballias, et al.. Primary metabolism intermediates of two tomato leaf tissues in contrasted light intensity conditions. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02740588⟩

Léa Roch, Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, Camille Bénard, et al.. Combining MS and NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02739251⟩

Léa Roch, Stéphane Bernillon, Mickael Maucourt, Catherine Deborde, Camille Benard, et al.. Combining MS and proton NMR metabolomic profiling during tomato fruit development to study environment effect on metabolism. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts. ⟨hal-01606414⟩

Clémence de Jaham, Benjamin Thiombiano, Camille Benard, A. P. Alonso, J. C. Cocuron, et al.. Assessment of metabolome compartmentation changes during tomato leaf development using nonaqueous fractionation. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015 - Book of abstracts. ⟨hal-01603745⟩

Vu Ngoctung Nguyen, Sophie Colombie, Marie Beurton-Aimar. Hub Reactions in Storage of Selected Compounds in Heterotrophic Plant Cell Network. Metabolic Pathway Analysis 2015, Jun 2015, Braga, Portugal. 1 p., 2015. ⟨hal-02793442⟩

Sophie Colombie, Bertrand Beauvoit, Christine Nazaret, Camille Benard, Martine Dieuaide Noubhani, et al.. Modelling metabolic fluxes during tomato fruit development. 12. Solanaceae Conference SOL 2015, Oct 2015, Bordeaux, France. 2015, SOL 2015. ⟨hal-01601445⟩

Florence Maurier, Clément Frainay, Fabien Jourdan, Sophie Colombie. Reconstruction du réseau métabolique de la tomate. 9. Journées scientifiques du RFMF, Jun 2015, Lille, France. 2015. ⟨hal-02742705⟩

Mickael Maucourt, Camille Bénard, Benoit Biais, Patricia Ballias, Catherine Deborde, et al.. Combining metabolite and enzymatic profiling during tomato fruit development. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02793996⟩

Eric Soubeyrand, Sophie Colombie, Zhanwu Dai, Stéphanie Cluzet, Ghislaine Hilbert, et al.. Flux balance analysis highlights cell energy and redox status as metabolic drivers for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation. Macrowine 2014, Sep 2014, Stellenbosch, South Africa. 2014. ⟨hal-02739299⟩

E. Soubeyrand, Sophie Colombie, Zhanwu Dai, S. Cluzet, Ghislaine Hilbert, et al.. Flux Balance Analysis metabolic modelling highlights cell energy and redox status as a metabolic driver for anthocyanin accumulation in grapevine GT3 cells under nitrogen starvation. ICP 2014 - XXVIIth International Conference on Polyphenols, Sep 2014, Nagoya, Japan. 2014. ⟨hal-02792547⟩

Florence Maurier, Fabien Jourdan, Sophie Colombie. Reconstruction du réseau métabolique de la tomate. 8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique RFMF, May 2014, Lyon, France. 1 p., 2014. ⟨hal-02799581⟩

Eric Soubeyrand, Sophie Colombie, Isabelle Merlin, Ghislaine Hilbert, Bertrand Beauvoit, et al.. Towards a system biology approach of the effect of different levels of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions. Plant Biology 2013, Jul 2013, Rhode Island, United States. 2013. ⟨hal-02804615⟩

N.T.V. Nguyen, Marie Beurton-Aymar, Sophie Colombie. Minimal cut sets and its application to study metabolic pathway structures. Thematic Research School on the Advances in Systems and Synthetic Biology - Modelling Complex Biological Systems in the Context of Genomics, Mar 2013, La Colle-sur-Loup, France. 2013. ⟨hal-02805827⟩

V.N.T. Nguyen, Marie Beurton-Aymar, Sophie Colombie. Heterotrophic plant cell network analysis: comparison between EFMs and MCSs. Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013. ⟨hal-02804631⟩

Bertrand Beauvoit, Sophie Colombie, Christine Nazaret, Marie-Hélène Andrieu, Martine Dieuaide Noubhani, et al.. Kinetic modelling of the metabolism and compartmentation of sugars during tomato fruit development. Metabolic Pathway Analysis 2013, Sep 2013, Oxford, United Kingdom. 2013. ⟨hal-02809066⟩

Eric Soubeyrand, Sophie Colombie, Isabelle Merlin, Ghislaine Hilbert, Bertrand Beauvoit, et al.. A systems biology approach for the effect of nitrogen supply on anthocyanin accumulation in grapevine cell suspensions. 7. Journées scientifiques du Réseau Français de Métabolomique et Fluxomique, Jun 2013, Amiens, France. 2013. ⟨hal-02810027⟩

Annick Moing, Benoit Biais, Mickael Maucourt, Camille Benard, Patricia Ballias, et al.. Compositional changes in fruit pericarp of water-stressed tomato in greenhouse. Metabolomics 2012, Jun 2012, Washington, United States. 1 p., 2012. ⟨hal-02805488⟩

Bertrand Beauvoit, Benoit Biais, Sophie Colombie, Martine Dieuaide, Yves Gibon, et al.. A simple model of tomato metabolism. International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012. ⟨hal-02806898⟩

Marie Beurton-Aimar, N.T. Nguyen-Vu, Sophie Colombie. Analysis of metabolic networks using minimal cut set computting. International Study Group for Systems Biology, Sep 2012, Ameland, Netherlands. 2012. ⟨hal-02805260⟩

Marie Beurton-Aymar, Tung Vu-Ngoc Nguyen, Sophie Colombie. Metabolic network reconstruction and their topological analysis. Plant Metabolic Flux Analysis : Methods and Protocols, 1090, Springer Science+Business Media, 2014, Methods in Molecular Biology, 978-1-62703-687-0. ⟨10.1007/978-1-62703-688-7_2⟩. ⟨hal-02796948⟩

Marie Beurton-Aimar, Vu Ngoc Tung Nguyen, Sophie Colombie. Metabolic Network Reconstruction and Their Topological Analysis. Plant Metabolic Flux Analysis,, 2014. ⟨hal-02000462⟩

Sophie Colombie. De l’optimisation de bioprocédés à l'étude du métabolisme des fruits axée sur la modélisation. Biologie végétale. Université de Bordeaux, 2016. ⟨tel-02796280⟩