CV

Pauline Robert, Jérôme Auzanneau, Ellen Goudemand, François-Xavier Oury, Bernard Rolland, et al.. Phenomic selection in wheat breeding: identification and optimisation of factors influencing prediction accuracy and comparison to genomic selection. TAG Theoretical and Applied Genetics, Springer Verlag, 2022, 135 (3), pp.895-914. ⟨10.1007/s00122-021-04005-8⟩. ⟨hal-03524817⟩

Sarah Ben-Sadoun, Aline Fugeray-Scarbel, Jérôme Auzanneau, Gilles Charmet, Stephane Lemarié, et al.. Integration of genomic selection into winter-type bread wheat breeding schemes: a simulation pipeline including economic constraints. Crop Breeding,Genetics and Genomics , Hapres, 2021, 3, ⟨10.20900/cbgg20210008⟩. ⟨hal-03359314⟩

Alice Danguy Des Déserts, Sophie Bouchet, Pierre Sourdille, Bertrand Servin. Evolution of recombination landscapes in diverging populations of bread wheat. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2021, 13 (8), ⟨10.1093/gbe/evab152⟩. ⟨hal-03290674⟩

Jacques M Faye, Fanna Maina, Eyanawa A Akata, Bassirou Sine, Cyril Diatta, et al.. A genomics resource for genetics, physiology, and breeding of West African sorghum. Plant Genome, 2021, ⟨10.1002/tpg2.20075⟩. ⟨hal-03274357⟩

Gilles Charmet, Louis-Gautier Tran, Jerome Auzanneau, Renaud Rincent, Sophie Bouchet. BWGS: A R package for genomic selection and its application to a wheat breeding programme. PLoS ONE, Public Library of Science, 2020, 15 (4), pp.1-20. ⟨10.1371/journal.pone.0222733⟩. ⟨hal-02571067⟩

Marcus Olatoye, Sandeep Marla, Zhenbin Hu, Sophie Bouchet, Ramasamy Perumal, et al.. Dissecting adaptive traits with nested association mapping: genetic architecture of inflorescence morphology in sorghum. G3, Genetics Society of America, 2020, 10 (5), pp.1785-1796. ⟨10.1534/g3.119.400658⟩. ⟨hal-02911856⟩

S. Ben-Sadoun, R. Rincent, J. Auzanneau, François-Xavier Oury, B. Rolland, et al.. Economical optimization of a breeding scheme by selective phenotyping of the calibration set in a multi-trait context: application to bread making quality. TAG Theoretical and Applied Genetics, Springer Verlag, 2020, 133 (7), pp.2197-2212. ⟨10.1007/s00122-020-03590-4⟩. ⟨hal-02553534⟩

François Balfourier, Sophie Bouchet, Sandra Robert, Romain de Oliveira, Hélène Rimbert, et al.. Worldwide phylogeography and history of wheat genetic diversity. Science Advances , American Association for the Advancement of Science (AAAS), 2019, 5 (5), pp.eaav0536. ⟨10.1126/sciadv.aav0536⟩. ⟨hal-02172516⟩

Fanna Maina, Sophie Bouchet, Sandeep R. Marla, Zhenbin Hu, Jianan Wang, et al.. Population genomics of sorghum (Sorghum bicolor) across diverse agroclimatic zones of Niger. Genome, NRC Research Press, 2018, 61 (4), pp.223-232. ⟨10.1139/gen-2017-0131⟩. ⟨hal-02625927⟩

Sophie Bouchet, Marcus O Olatoye, Sandeep R Marla, Ramasamy Perumal, Tesfaye Tesso, et al.. Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population.. Genetics, Genetics Society of America, 2017, 206 (2), pp.573-585. ⟨10.1534/genetics.116.198499⟩. ⟨hal-02627749⟩

Sophie Bouchet, Pascal Bertin, T Presterl, Philippe Jamin, Denis Coubriche, et al.. Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits. Heredity, 2017, 118 (3), pp.249-259. ⟨10.1038/hdy.2016.88⟩. ⟨hal-01481767⟩

Zhenbin Hu, Bassirou Mbacké, Ramasamy Perumal, Mame Codou Guèye, Ousmane Sy, et al.. Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces. BMC Genomics, BioMed Central, 2015, 16 (1), ⟨10.1186/s12864-015-2255-0⟩. ⟨hal-01342372⟩

Renaud Rincent, Stephane S. Nicolas, Sophie Bouchet, T. Altmann, Dominique D. Brunel, et al.. Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production. TAG Theoretical and Applied Genetics, Springer Verlag, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩. ⟨hal-02637142⟩

Claire Billot, Punna Ramu, Sophie Bouchet, Jacques Chantereau, Monique Deu, et al.. Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources. PLoS ONE, Public Library of Science, 2013, 8 (4), pp.e59714. ⟨10.1371/journal.pone.0059714⟩. ⟨hal-01595265⟩

Sophie Bouchet, Bertrand Servin, Pascal Bertin, Delphine D. Madur, Valerie V. Combes, et al.. Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus. PLoS ONE, Public Library of Science, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩. ⟨hal-02652500⟩

Philippe Cubry, Fabien de Bellis, Komlan Avia, Sophie Bouchet, David Pot, et al.. An initial assessment of linkage disequilibrium (LD) in coffee trees: LD patterns in groups of Coffea canephora Pierre using microsatellite analysis. BMC Genomics, BioMed Central, 2013, 14, 15 p. ⟨10.1186/1471-2164-14-10⟩. ⟨hal-02643249⟩

Julie Sardos, Jean-Louis Noyer, Sophie Bouchet, Vincent Lebot. Genetic diversity of taro (Colocasia esculenta (L.) Schott) in Vanuatu (Oceania): an appraisal of the distribution of allelic diversity (DAD) with SSR markers. Genetic Resources and Crop Evolution, Springer Verlag, 2012, 59 (5), pp.805 - 820. ⟨10.1007/s10722-011-9720-7⟩. ⟨hal-01268335⟩

Eléonore Durand, Sophie Bouchet, Pascal Bertin, Adrienne Ressayre, Philippe Jamin, et al.. Flowering Time in Maize: Linkage and Epistasis at a Major Effect Locus. Genetics, Genetics Society of America, 2012, 190 (4), pp.1547 - +. ⟨10.1534/genetics.111.136903⟩. ⟨hal-02648939⟩

Sophie Bouchet, David Pot, Monique Deu, Jean-François Rami, Claire Billot, et al.. Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers. PLoS ONE, Public Library of Science, 2012, 7 (3), ⟨10.1371/journal.pone.0033470⟩. ⟨hal-01268396⟩

Fabrice Sagnard, Monique Deu, Dékoro Dembélé, Raphaël Leblois, Lassana Touré, et al.. Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region. TAG Theoretical and Applied Genetics, Springer Verlag, 2011, 123 (7), pp.1231-1246. ⟨10.1007/s00122-011-1662-0⟩. ⟨hal-02649865⟩

Emma S Mace, Jean-Francois Rami, Sophie Bouchet, Patricia E Klein, Robert R Klein, et al.. A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers. BMC Plant Biology, BioMed Central, 2009, 9 (13), ⟨10.1186/1471-2229-9-13⟩. ⟨hal-01338089⟩

G. M. Rosewarne, R. P. Singh, J. Huerta-Espino, H. M. William, Sophie Bouchet, et al.. Leaf tip necrosis, molecular markers and β1-proteasome subunits associated with the slow rusting resistance genes Lr46/Yr29. TAG Theoretical and Applied Genetics, Springer Verlag, 2006, 112 (3), pp.500-508. ⟨10.1007/s00122-005-0153-6⟩. ⟨hal-01338628⟩

P Robert, Francois-Xavier Oury, Jérôme Auzanneau, Bernard Rolland, Emmanuel E. Heumez, et al.. Identification of factors influencing predictive ability of phenomic selection and comparison to genomic selection in wheat breeding programs. 6th Conference on Cereal Biotechnology and Breeding,CBB6, EUCARPIA; AKCongress, Nov 2021, Budapest, Hungary. ⟨hal-03480325⟩

Sarah Ben Sadoun, Sophie Bouchet, Gilles Charmet. Prédiction génomique de la valeur boulangère. Phloème 2020 : biennales de l’innovation céréalière, Arvalis - Institut du végétal, Jan 2020, Paris, France. ⟨hal-03113799⟩

Sarah Ben Sadoun, Renaud Rincent, Jerome Auzanneau, Francois-Xavier Oury, Bernard Rolland, et al.. Bread-making quality predictions of multi-trait assisted genomic selection. 1. International Wheat Congress, International Wheat Congress; Wheat inititive, Jul 2019, Saskatoon, Canada. ⟨hal-02942672⟩

Jacques Le Gouis, Agathe Mini, Sophie Bouchet, Etienne Paux, Stéphane Lafarge, et al.. Selection and characterization of a winter wheat diversity panel. 7. Congress and Associate Symposiums of Breads of the future: genomics, genetics, breeding, Federal research center “Vavilov all-Russian Institute of Plant Genetic Resources” – VIR., Jun 2019, St Petersbourg, Russia. ⟨hal-02289527⟩

Sarah Ben Sadoun, Renaud Rincent, Jerome Auzanneau, Francois-Xavier Oury, Bernard Rolland, et al.. Bread-making quality predictions: multi-trait assisted genomic selection in bread wheat. "Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy. ⟨hal-02289536⟩

Alice Danguy Des Deserts, Ludovic Duvaux, Pierre Sourdille, Sophie Bouchet. Historical recombination maps estimated with two diverging european and asian populations on bread wheat 3B chromosome. "Quantitative Genetics and Genomics" Gordon Research Conference, Gordon Research Conference., Feb 2019, Barga, Italy. ⟨hal-02289531⟩

Sophie Bouchet, Stephane Lemarié, Aline Fugeray-Scarbel, Jerome Auzanneau, Gilles Charmet. Optimization of breeding schemes using genomic predictions and simulations. 4. Conference on Cereal Biotechnology and Breeding (CBB4), EUCARPIA Cereal Section., Nov 2017, Budapest, Hungary. ⟨hal-02786724⟩

Gilles Charmet, Sophie Bouchet, Jerome Auzanneau, Aline Fugeray-Scarbel, Stephane Lemarié. Virtual selection for comparing wheat breeding schemes at constant total cost. 13. International Wheat Genetics Symposium, Apr 2017, Tulln, Austria. ⟨hal-02340466⟩

Aline Fugeray-Scarbel, Stephane Lemarié, Sophie Bouchet, Gilles Charmet, Jean Michel Elsen, et al.. De la modélisation des schémas de sélection à l'analyse de l'efficacité économique de la sélection génomique : méthode et quelques cas d'application. Séminaire SelGen 2017 : "La sélection génomique, bilan et perspectives", Sep 2017, Clichy, France. 1 p. ⟨hal-01595570⟩

Aline Fugeray-Scarbel, Sarah Ben-Sadoun, Sophie Bouchet, Stephane Lemarié. Analyzing the economic effectiveness of genomic selection relative to conventional breeding approaches. Nourollah Ahmadi; Jérôme Bartholomé. Complex Trait Prediction, 2467, Springer US, pp.619-644, 2022, Methods in Molecular Biology, 978-1-0716-2205-6. ⟨10.1007/978-1-0716-2205-6_22⟩. ⟨hal-03652408⟩

Alice Danguy Des Déserts, Sophie Bouchet, Pierre Sourdille, Bertrand Servin. Evolution of recombination landscapes in diverging populations of bread wheat. 2021. ⟨hal-03244446⟩