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Researcher identifiers

Number of documents

42

Chargé de recherche INRAE


Journal articles12 documents

  • Guillaume Ravel, Michel Bergmann, Alain Trubuil, Julien Deschamps, Romain Briandet, et al.. Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy. eLife, eLife Sciences Publication, 2022, 11, ⟨10.7554/eLife.76513⟩. ⟨hal-03695580⟩
  • Léo Darrigade, Marie Haghebaert, Claire Cherbuy, Simon Labarthe, Beatrice Laroche. A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations. Journal of Mathematical Biology, Springer Verlag (Germany), 2022, 84 (7), pp.1-67. ⟨10.1007/s00285-022-01766-8⟩. ⟨hal-03702825⟩
  • Mélanie Bourgin, Simon Labarthe, Aicha Kriaa, Marie Lhomme, Philippe Gérard, et al.. Exploring the Bacterial Impact on Cholesterol Cycle: A Numerical Study. Frontiers in Microbiology, Frontiers Media, 2020, 11, pp.1121. ⟨10.3389/fmicb.2020.01121⟩. ⟨hal-02863236⟩
  • Simon Labarthe, Béatrice Laroche, Thi Nhu Tao Nguyen, Bastien Polizzi, Florian Patout, et al.. A Multi-Scale Epidemic Model of Salmonella Infection With Heterogeneous Shedding. ESAIM: Proceedings and Surveys, EDP Sciences, 2020, 67, pp.261-284. ⟨10.1051/proc/202067015⟩. ⟨hal-02043742v2⟩
  • Simon Labarthe, Bastien Polizzi, Thuy Phan, Thierry Goudon, Magali Ribot, et al.. A mathematical model to investigate the key drivers of the biogeography of the colon microbiota.. Journal of Theoretical Biology, Elsevier, 2019, 462 (7), pp.552-581. ⟨10.1016/j.jtbi.2018.12.009⟩. ⟨hal-01761191v3⟩
  • Claire Cherbuy, Pierre Vaugelade, Simon Labarthe, Edith Honvo Houeto, Beatrice Darcy Vrillon, et al.. The contribution of intestinal gluconeogenesis to glucose homeostasis Is low in 2-day-old pigs1–3. Journal of Nutrition, American Society for Nutrition, 2017, 147 (3), pp.361-366. ⟨10.3945/jn.116.242131⟩. ⟨hal-01608162⟩
  • Yves Coudière, Jacques Henry, Simon Labarthe. An asymptotic two-layer monodomain model of cardiac electrophysiology in the atria: derivation and convergence *. SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2017, 77 (2), pp.409 - 429. ⟨10.1137/15M1016886⟩. ⟨hal-00922717v4⟩
  • Arnaud Bridier, Jean-Christophe Piard, Caroline Pandin, Simon Labarthe, Florence Dubois-Brissonnet, et al.. Spatial organization plasticity as an adaptive driver of surface microbial communities. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.1364. ⟨10.3389/fmicb.2017.01364⟩. ⟨hal-01605872⟩
  • Tamara El Bouti, Thierry Goudon, Simon Labarthe, Béatrice Laroche, Bastien Polizzi, et al.. A mixture model for the dynamic of the gut mucus layer. ESAIM: Proceedings, EDP Sciences, 2016, 55 (décembre), pp.111-130. ⟨10.1051/proc/201655111⟩. ⟨hal-01421708v2⟩
  • Stefanie Widder, Rosalind J Allen, Thomas Pfeiffer, Thomas P Curtis, Carsten Wiuf, et al.. Challenges in microbial ecology: building predictive understanding of community function and dynamics.. ISME Journal, Nature Publishing Group, 2016, 10, pp.1-12. ⟨10.1038/ismej.2016.45⟩. ⟨hal-01512087⟩
  • Yves Coudière, Jacques Henry, Simon Labarthe. A two layers monodomain model of cardiac electrophysiology of the atria. Journal of Mathematical Biology, Springer Verlag (Germany), 2015, 71 (6-7), pp.35. ⟨10.1007/s00285-015-0861-8⟩. ⟨hal-01132889⟩
  • Simon Labarthe, Jason Bayer, Yves Coudière, Jacques Henry, Hubert Cochet, et al.. A bilayer model of human atria: mathematical background, construction, and assessment. EP-Europace, Oxford University Press (OUP), 2014, 16 (suppl 4), pp.29. ⟨10.1093/europace/euu256⟩. ⟨hal-01132905⟩

Conference papers14 documents

  • Guillaume Ravel, Michel Bergmann, Alain Trubuil, Julien Deschamps, Romain Briandet, et al.. Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy. Image-based Systems Biology - IbSB, Sep 2022, Jena, Germany. ⟨10.7554/eLife.76513⟩. ⟨hal-03753533⟩
  • Wenfan Cao, Maxime Lecomte, Solène Le Fur, Julie J. Aubert, Marie-Bernadette Maillard, et al.. Métatranscriptomique et modèle métabolique pour identifier la succession des métabolismes bactériens en interaction lors de la fabrication d’un fromage modèle à pâte pressée.. 23ème édition du colloque du Club des Bactéries Lactiques, UMR INRAE - Institut Agro STLO (Science et Technologie du Lait et de l’Œuf), Jun 2022, Rennes, France. ⟨hal-03694338⟩
  • Wenfan Cao, Maxime Lecomte, Solène Le Fur, Julie J. Aubert, Marie-Bernadette Maillard, et al.. Metatranscriptomics and metabolic modeling to identify bacterial metabolic interactions during the manufacture of a model pressed cheese.. Foodmicro 2022, Aug 2022, Athènes, Greece. ⟨hal-03781287⟩
  • Simon Labarthe. Modeling and inference of bacterial swimmers in biofilms. CEMRACS 2021, Jul 2021, Marseille, France. ⟨hal-03352441⟩
  • Maxime Lecomte, David James Sherman, Hélène Falentin, Clémence Frioux, Simon Labarthe. Metabolic modelling deciphers interactions in a cheese bacterial community. Metaboday 2021, Mar 2021, Bordeaux, France. ⟨hal-03531761⟩
  • Simon Labarthe. Omic-based model of the gut microbiota. Workshop 'Transport in the digestive tract : experiments, modeling, applications to microbiology', Oct 2020, Paris, France. ⟨hal-03352438⟩
  • Simon Labarthe, Simon Labarthe Maiage. MISTIFY PROJECT. ECOLOGY OF SALMONELLA TYPHIMURIUM INFECTION: A MATHEMATICAL MODELING INSIGHT. Annual meeting of Agreenskills program, Apr 2019, Bruxelles, Belgium. ⟨hal-03352429⟩
  • Béatrice Laroche, Nicolas Brunel, Daniel Goujot, Simon Labarthe. Parameter estimation for dynamical systems using an FDA approach. International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2018), Dec 2018, Pise, Italy. ⟨hal-02154569⟩
  • Simon Labarthe, Edward Vigmond, Yves Coudière, Jacques Henry, Hubert Cochet, et al.. A Computational Bilayer Surface Model of Human Atria. FIMH 2013 - 7th International Conference on Fonctional Imaging and Modeling of the Heart, S.Ourselin, D.Ruecker, N.Smith, Jun 2013, London, United Kingdom. ⟨hal-00802104v2⟩
  • Simon Labarthe, Edward Vigmond, Yves Coudière, Jacques Henry, Hubert Cochet, et al.. Influence of Transmural Slow-Conduction Zones on the Long- Time Behaviour Of Atrial Arrhythmia. A Numerical Study with a Human Bilayer Atrial Model. CINC - Computing in Cardiology 2013, Sep 2013, Zaragoza, Spain. pp.1187-1190. ⟨hal-00921262⟩
  • Edward Vigmond, Simon Labarthe, Hubert Cochet, Yves Coudière, Jacques Henry, et al.. A Bilayer Representation of the Human Atria. EMBC - 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2013, EMBS, Jul 2013, Osaka, Japan. pp.1530-1533, ⟨10.1109/EMBC.2013.6609804⟩. ⟨hal-00837671⟩
  • Nejib Zemzemi, Simon Labarthe, Rémi Dubois, Yves Coudière. From Body Surface Potential to Activation Maps on the Atria: a Machine Learning Technique. CINC - Computing in Cardiology 2012, Sep 2012, Krakow, Poland. pp.125-128. ⟨hal-00759210⟩
  • Rémi Dubois, Simon Labarthe, Yves Coudière, Mélèze Hocini, Michel Haïssaguerre. Global and Directional Activation Maps for Cardiac Mapping in Electrophysiology. CINC 2012 - Computing In Cardiology - 2012, Sep 2012, Krakow, Poland. pp.349-352. ⟨hal-00760451⟩
  • Simon Labarthe, Yves Coudière, Jacques Henry, Hubert Cochet. A Semi-Automatic Method To Construct Atrial Fibre Structures : a Tool for Atrial Simulations. CinC 2012 - Computing in Cardiology, Sep 2012, Krakow, Poland. pp.881-884. ⟨hal-00759191v2⟩

Poster communications8 documents

  • Thibault Malou, Simon Labarthe, Béatrice Laroche, Elisabeta Vergu, François Deslandes. Pest detection by inversion of a pheromone dispersion model. ECMTB 2022 - 12th European Conference on Mathematical and Theoretical Biology, Sep 2022, Heidelberg, Germany. ⟨hal-03777604⟩
  • Maxime Lecomte, David James Sherman, Hélène Falentin, Clémence Frioux, Simon Labarthe. Modelling metabolic network dynamics in a cheese bacterial community. JOBIM,Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. ⟨hal-03533781⟩
  • Maxime Lecomte, David James Sherman, Hélène Falentin, Clémence Frioux, Simon Labarthe. Modelling metabolic network dynamics in a cheese bacterial community. MPA, Metabolic Pathway Analysis, Aug 2021, Knoxville, United States. ⟨hal-03533786⟩
  • Maxime Lecomte, David James Sherman, Hélène Falentin, Clémence Frioux, Simon Labarthe. Modelling metabolic network dynamics in a cheese bacterial community. CMSB, The 19th conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. ⟨hal-03533795⟩
  • Simon Labarthe, Yves Coudière, Jacques Henry. Numerical modeling of the electrical activity of the atria and the pulmonary veins. Workshop IHU Liryc, Oct 2013, Pessac, France. ⟨hal-00926441⟩
  • Simon Labarthe, Yves Coudière, Jacques Henry. Superposition de couches de fibres et propagations anormales : une étude numérique. Printemps de la Cardiologie, Apr 2013, Marseille, France. ⟨hal-00926480⟩
  • Simon Labarthe, Yves Coudière, Jacques Henry. Modélisation bidimensionnelle d'un problème de réaction-diffusion anisotrope hétérogène en couche mince appliquée à la cardiologie. CANUM - 2012, May 2012, Super-Besse, France. ⟨hal-00785621⟩
  • Simon Labarthe, Yves Coudière, Jacques Henry. Simulation numérique de l'activité électrique dans l'oreillette gauche et les veines pulmonaires. Printemps de la Cardiologie, Apr 2012, Bordeaux, France. ⟨hal-00785607⟩

Book sections2 documents

  • Simon Labarthe. Mathématiques et cardiologie : modéliser pour mieux comprendre les arythmies auriculaires. 5 jeunes chercheurs d'avenir 2015, Editions le Pommier, pp.192, 2015, Promesses de la Science, 978-2-7465-0937-5. ⟨hal-02795569⟩
  • Simon Labarthe, Edward Vigmond, Yves Coudière, Jacques Henry, Hubert Cochet, et al.. A computational bilayer surface model of human atria. Functional Imaging and Modeling of the Heart, 7945 (Chapter 4), Springer Berlin Heidelberg, pp.27-34, 2013, Lecture Notes in Computer Science, 978-3-642-38898-9. ⟨10.1007/978-3-642-38899-6_4⟩. ⟨hal-01606999⟩

Other publications1 document

Preprints, Working Papers, ...4 documents

  • Léo Darrigade, Marie Haghebaert, Claire Cherbuy, Simon Labarthe, Béatrice Laroche. A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations. 2022. ⟨hal-03379023v2⟩
  • Clémence Frioux, Sylvie Huet, Simon Labarthe, Julien Martinelli, Thibault Malou, et al.. Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection models. 2022. ⟨hal-03635862v2⟩
  • Guillaume Ravel, Michel Bergmann, Alain Trubuil, Julien Deschamps, Romain Briandet, et al.. Inferring characteristics of bacterial swimming in biofilm matrix from time-lapse confocal laser scanning microscopy. 2022. ⟨hal-03479903v3⟩
  • Thierry Goudon, Tamara El Bouti, Simon Labarthe, Béatrice Laroche, Tison Remi, et al.. A mixture model for the dynamic of the gut mucus layer. 2015. ⟨hal-01270350⟩

Theses1 document

  • Simon Labarthe. Modélisation de l'activité électrique des oreillettes et des veines pulmonaires. Modélisation et simulation. Université Victor Segalen - Bordeaux II, 2013. Français. ⟨tel-00925253⟩