Controlled‐advancement rigid‐body optimization of nanosystems
Petr Popov
,
Sergei Grudinin
,
Andrii Kurdiuk
,
Pavel Buslaev
,
Stephane Redon
Article dans une revue
hal-02315276v1
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Hydroxylation of antitubercular drug candidate, SQ109, by mycobacterial cytochrome P450
Sergey Bukhdruker
,
Tatsiana Varaksa
,
Irina Grabovec
,
Egor Marin
,
Polina Shabunya
,
et al.
Article dans une revue
hal-02931707v1
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AnAnaS: Software for Analytical Analysis of Symmetries in Protein Structures
Guillaume Pagès
,
Sergei Grudinin
Chapitre d'ouvrage
hal-02931690v1
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KORP-PL: a coarse-grained knowledge-based scoring function for protein-ligand interactions
Maria Kadukova
,
Karina dos Santos Machado
,
Pablo Chacón
,
Sergei Grudinin
Article dans une revue
hal-02931666v1
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Convex-PL: a novel knowledge-based potential for protein-ligand interactions deduced from structural databases using convex optimization
Maria Kadukova
,
Sergei Grudinin
Article dans une revue
hal-01591154v1
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User Guide for AnAnaS : Analytical Analyzer of Symmetries
Guillaume Pagès
,
Sergei Grudinin
2017
Pré-publication, Document de travail
hal-01644987v1
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Spherical convolutions on molecular graphs for protein model quality assessment
Ilia Igashov
,
Nikita Pavlichenko
,
Sergei Grudinin
Article dans une revue
hal-03006448v2
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Analytical symmetry detection in protein assemblies. II. Dihedral and Cubic symmetries
Guillaume Pagès
,
Sergei Grudinin
Article dans une revue
hal-01816449v1
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Ground state structure of D75N mutant of sensory rhodopsin II in complex with its cognate transducer
Andrii Ishchenko
,
Ekaterina Round
,
Valentin Borshchevskiy
,
Sergei Grudinin
,
Ivan Yu. Gushchin
,
et al.
Article dans une revue
hal-00881553v1
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Pepsi-SAXS : an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles
Sergei Grudinin
,
Maria Garkavenko
,
Andrei Kazennov
Article dans une revue
hal-01516719v1
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Knodle: A Support Vector Machines-Based Automatic Perception of Organic Molecules from 3D Coordinates
Maria Kadukova
,
Sergei Grudinin
Article dans une revue
hal-01381010v1
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New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex
Andrii Ishchenko
,
Ekaterina Round
,
Valentin Borshchevskiy
,
Sergei Grudinin
,
Ivan Yu. Gushchin
,
et al.
Article dans une revue
hal-01458744v1
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Deep learning entering the post-protein structure prediction era : new horizons for structural biology
Sergei Grudinin
Article dans une revue
hal-03874684v1
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Blind prediction of homo‐ and hetero‐ protein complexes: The CASP13‐CAPRI experiment
Marc Lensink
,
Guillaume Brysbaert
,
Nurul Nadzirin
,
Sameer Velankar
,
Raphaël A.G. Chaleil
,
et al.
Proteins - Structure, Function and Bioinformatics , 2019, 87 (12), pp.1200-1221.
⟨10.1002/prot.25838⟩
Article dans une revue
hal-02320974v1
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Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data
Sri Devan Appasamy
,
John Berrisford
,
Romana Gaborova
,
Sreenath Nair
,
Sergei Grudinin
,
et al.
Article dans une revue
hal-04304774v1
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Unique DC-SIGN Clustering Activity of a Small Glycomimetic: A Lesson for Ligand Design
Ieva Sutkeviciute
,
Michel Thépaut
,
Sara Sattin
,
Angela Berzi
,
John Mcgeagh
,
et al.
Article dans une revue
hal-01018565v1
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User Guide for NOLB : Non-Linear Normal Mode Analysis
Sergei Grudinin
2018
Pré-publication, Document de travail
hal-01565129v3
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Fast construction of assembly trees for molecular graphs
Svetlana Artemova
,
Sergei Grudinin
,
Stephane Redon
Article dans une revue
istex
hal-00746836v1
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Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences
Greg Hura
,
Curtis Hodge
,
Daniel Rosenberg
,
Dmytro Guzenko
,
Jose Duarte
,
et al.
Proteins - Structure, Function and Bioinformatics , 2019, Critical Assessment of Methods of Protein Structure Prediction (CASP) Special Issue, 87 (12), pp.1298-1314.
⟨10.1002/prot.25827⟩
Article dans une revue
hal-02315292v1
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Protein model quality assessment using 3D oriented convolutional neural networks
Guillaume Pagès
,
Benoit Charmettant
,
Sergei Grudinin
Article dans une revue
hal-01899468v1
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Blind prediction of interfacial water positions in CAPRI
Marc F. Lensink
,
Aiain H. Moal
,
Paul A. Bates
,
Panagiotis L. Kastritis
,
Adrien S. J. Melquiond
,
et al.
Article dans une revue
hal-00880345v1
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Mechanism of transmembrane signaling by sensor histidine kinases
Ivan Yu. Gushchin
,
Igor I Melkinov
,
Vitaly Polovinkin
,
Andrii Ishchenko
,
Anastasia Yuzhakova
,
et al.
Article dans une revue
hal-01526454v1
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Rapid determination of RMSDs corresponding to macromolecular rigid body motions
Petr Popov
,
Sergei Grudinin
Article dans une revue
hal-00952248v1
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Predicting protein functional motions: an old recipe with a new twist
Sergei Grudinin
,
Elodie Laine
,
Alexandre Hoffmann
Article dans une revue
hal-02291552v1
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Interdomain Flexibility within NADPH Oxidase Suggested by SANS Using LMNG Stealth Carrier
Annelise Vermot
,
Isabelle Petit-Härtlein
,
Cécile Breyton
,
Aline Le Roy
,
Michel Thépaut
,
et al.
Article dans une revue
hal-02921448v1
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HermiteFit: fast-fitting atomic structures into a low-resolution density map using three-dimensional orthogonal Hermite functions
Georgy Derevyanko
,
Sergei Grudinin
Article dans une revue
istex
hal-01078550v1
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Predicting Binding Poses and Affinities in the CSAR 2013―2014 Docking Exercises Using the Knowledge-Based Convex-PL Potential
Sergei Grudinin
,
Petr Popov
,
Emilie Neveu
,
Georgy Cheremovskiy
Article dans une revue
hal-01258022v1
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6DCNN with roto-translational convolution filters for volumetric data processing
Dmitrii Zhemchuzhnikov
,
Ilia Igashov
,
Sergei Grudinin
The Thirty-Sixth AAAI Conference on Artificial Intelligence (AAAI-22) , AAAI, Feb 2022, Vancouver, Canada. pp.4707-4715
Communication dans un congrès
hal-03298699v2
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A novel fast Fourier transform accelerated off-grid exhaustive search method for cryo-electron microscopy fitting
Alexandre Hoffmann
,
Valérie Perrier
,
Sergei Grudinin
Article dans une revue
hal-01553293v1
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Principal component analysis of lipid molecule conformational changes in molecular dynamics simulations
Pavel Buslaev
,
Valentin I. Gordeliy
,
Sergei Grudinin
,
Ivan Yu. Gushchin
Article dans une revue
hal-01258167v1
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