Sébastien Villéger

Documents

Publications

	Functional changes across marine habitats due to ocean acidification Núria Teixidó , Jérémy Carlot , Samir Alliouane , Enric Ballesteros , Cinzia de Vittor Global Change Biology, 2024, 30 (1), pp.170105. ⟨10.1111/gcb.17105⟩ Article dans une revue hal-04417178v1
	Detecting benefits of protection level on diversity facets in a sea of temporal scarcity Camille Magneville , Solène Dedieu , Nicolas Loiseau , Thomas Claverie , Sébastien Villéger Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, ⟨10.1002/aqc.4062⟩ Article dans une revue hal-04431971v1
	Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea Valentine Fleuré , Camille Magneville , David Mouillot , Sébastien Villéger Aquatic Conservation: Marine and Freshwater Ecosystems, 2024, 34 (1), pp.e4073. ⟨10.1002/aqc.4073⟩ Article dans une revue hal-04491791v1
	The role of fish feces for nutrient cycling on coral reefs Nina Schiettekatte , Jordan Casey , Simon Brandl , Alexandre Mercière , Sam Degregori Oikos, 2023, ⟨10.1111/oik.09914⟩ Article dans une revue hal-04163907v1
	Inferring functional diversity from environmental DNA metabarcoding Céline Condachou , Tristan Milhau , Jérôme Murienne , Sébastien Brosse , Sébastien Villéger Environmental DNA, 2023, 5 (5), pp.934-944. ⟨10.1002/edn3.391⟩ Article dans une revue hal-04269097v1
	Behavior of reef fishes during a submarine magnitude 5 earthquake Sébastien Villéger , Camille Magneville , Fany Roncin , Lise Retailleau , Thomas Claverie Ecology, 2023, 104 (10), pp.e4148. ⟨10.1002/ecy.4148⟩ Article dans une revue hal-04248123v1
	Stocking practices shape the taxonomic and functional diversity of fish communities in gravel pit lakes Marie Gimenez , Sébastien Villéger , Gaël Grenouillet , Julien Cucherousset Fisheries Management and Ecology, 2023, ⟨10.1111/fme.12621⟩ Article dans une revue hal-04104169v1
	An invasive herbivorous fish (Siganus rivulatus) influences both benthic and planktonic microbes through defecation and nutrient excretion Arthur Escalas , Amandine Avouac , Jonathan Belmaker , Thierry Bouvier , Valentin Clédassou Science of the Total Environment, 2022, 838 (3), pp.156207. ⟨10.1016/j.scitotenv.2022.156207⟩ Article dans une revue hal-03798650v1
	Contemporary environment and historical legacy explain functional diversity of freshwater fishes in the world rivers Guohuan Su , Pablo A. Tedesco , Aurele Toussaint , Sébastien Villéger , Sebastien Brosse Global Ecology and Biogeography, 2022, ⟨10.1111/geb.13455⟩ Article dans une revue hal-03622229v1
	mFD: an R package to compute and illustrate the multiple facets of functional diversity Camille Magneville , Nicolas Loiseau , Camille Albouy , Nicolas Casajus , Thomas Claverie Ecography, 2022, 2022 (1), ⟨10.1111/ecog.05904⟩ Article dans une revue hal-03566638v1
	Mesophotic reefs are not refugia for neither taxonomic nor functional diversity of reef fishes Nicolas Loiseau , Sébastien Villéger , Charles Le Bozec , Marie Gimenez , Seiji Léo Kawahara Coral Reefs, 2022, ⟨10.1007/s00338-022-02311-1⟩ Article dans une revue hal-03860627v1
	Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold Marlene Chiarello , Mark Mccauley , Sébastien Villéger , Colin R. Jackson PLoS ONE, 2022, 17 (2), pp.e0264443. ⟨10.1371/journal.pone.0264443⟩ Article dans une revue hal-03669633v1
	Linking key human-environment theories to inform the sustainability of coral reefs Joshua Cinner , Jessica Zamborain-Mason , Eva Maire , Andrew Hoey , Nicholas A.J. Graham Current Biology - CB, 2022, 32 (12), pp.2610-2620. ⟨10.1016/j.cub.2022.04.055⟩ Article dans une revue hal-03798539v1
	Combining stereo‐video monitoring and physiological trials to estimate reef fish metabolic demands in the wild Nina M D Schiettekatte , Francesca Conte , Beverly French , Simon J Brandl , Christopher J Fulton Ecology and Evolution, 2022, 12, ⟨10.1002/ece3.9084⟩ Article dans une revue hal-03798478v1
	Shift and homogenization of gut microbiome during invasion in marine fishes Arthur Escalas , Jean-Christophe Auguet , Amandine Avouac , Jonathan Belmaker , Thanos Dailianis Animal Microbiome, 2022, 4 (1), pp.37. ⟨10.1186/s42523-022-00181-0⟩ Article dans une revue hal-03691656v1
	Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems Madeline Steinberg , Jean-Baptiste Juhel , Virginie Marques , Clara Péron , Régis Hocdé Marine Biology, 2022, 169 (1), ⟨10.1007/s00227-021-03998-6⟩ Article dans une revue hal-03566643v1
	Mesophotic coral ecosystems of French Polynesia are hotspots of alpha and beta generic diversity for scleractinian assemblages Gonzalo Pérez‐rosales , Michel Pichon , Héloïse Rouzé , Sébastien Villéger , Gergely Torda Diversity and Distributions, 2022, 28, pp.1391 - 1403. ⟨10.1111/ddi.13549⟩ Article dans une revue hal-03798538v1
	Biological trade-offs underpin coral reef ecosystem functioning Nina Schiettekatte , Simon Brandl , Jordan Casey , Nicholas Graham , Diego Barneche Nature Ecology & Evolution, 2022, 6, pp.701-708. ⟨10.1038/s41559-022-01710-5⟩ Article dans une revue hal-03637887v1
	Long‐duration remote underwater videos reveal that grazing by fishes is highly variable through time and dominated by non‐indigenous species Camille Magneville , Marie‐lou Leréec Le Bricquir , Thanos Dailianis , Grigorios Skouradakis , Thomas Claverie Remote Sensing in Ecology and Conservation, 2022, ⟨10.1002/rse2.311⟩ Article dans une revue hal-03858677v1
	Predation Cues Lead to Reduced Foraging of Invasive Siganus rivulatus in the Mediterranean Daphna Shapiro Goldberg , Gil Rilov , Sébastien Villéger , Jonathan Belmaker Frontiers in Marine Science, 2021, 8, pp.678848. ⟨10.3389/fmars.2021.678848⟩ Article dans une revue hal-03413533v1
	FISHMORPH: A global database on morphological traits of freshwater fishes Sébastien Brosse , Nicolas Charpin , Guohuan Su , Aurèle Toussaint , Guido Herrera-R Global Ecology and Biogeography, 2021, 30 (12), pp.2330-2336. ⟨10.1111/geb.13395⟩ Article dans une revue hal-03754045v1
	Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts Marie-Charlotte Cheutin , Sébastien Villéger , Christina C Hicks , James P W Robinson , Nicholas a J Graham Microorganisms, 2021, 9, ⟨10.3390/microorganisms9081711⟩ Article dans une revue hal-03415928v1
	Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet Arthur Escalas , Jean-Christophe Auguet , Amandine Avouac , Raphael Seguin , Antoine Gradel Frontiers in Marine Science, 2021, 8, pp.622883. ⟨10.3389/fmars.2021.622883⟩ Article dans une revue hal-03413506v1
	Trait similarity in reef fish faunas across the world’s oceans Matthew Mclean , Rick Stuart-Smith , Sébastien Villéger , Arnaud Auber , Graham Edgar Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (12), pp.e2012318118. ⟨10.1073/pnas.2012318118⟩ Article dans une revue hal-03435832v1
	The dimensionality and structure of species trait spaces David Mouillot , Nicolas Loiseau , Matthias Grenié , Adam Algar , Michele Allegra Ecology Letters, 2021, 24 (9), pp.1988-2009. ⟨10.1111/ele.13778⟩ Article dans une revue hal-03405358v1
	Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient V. Parravicini , M. G. Bender , Sébastien Villéger , Fabien Leprieur , L. Pellissier Proceedings of the Royal Society B: Biological Sciences, 2021, 288 (1961), pp.20211712. ⟨10.1098/rspb.2021.1712⟩ Article dans une revue hal-03475052v1
	Human impacts on global freshwater fish biodiversity Guohuan Su , Maxime Logez , Jun Xu , Shengli Tao , Sébastien Villéger Science, 2021, 371 (6531), pp.835-838. ⟨10.1126/science.abd3369⟩ Article dans une revue hal-03321441v1
	Automatic underwater fish species classification with limited data using few-shot learning Sebastien Villon , Corina Iovan , Morgan Mangeas , Thomas Claverie , David Mouillot Ecological Informatics, 2021, 63, pp.101320. ⟨10.1016/j.ecoinf.2021.101320⟩ Article dans une revue hal-03415715v1
	Phylogenetic conservatism drives nutrient dynamics of coral reef fishes Jacob E. Allgeier , Brian C. Weeks , Katrina S. Munsterman , Nina Wale , Seth J. Wenger Nature Communications, 2021, 12 (1), pp.5432. ⟨10.1038/s41467-021-25528-0⟩ Article dans une revue hal-03451166v1
	Use of environmental DNA in assessment of fish functional and phylogenetic diversity Virginie Marques , Paul Castagne , Andrea Polanco Fernandez , Giomar Helena Borrero-Perez , Régis Hocdé Conservation Biology, 2021, ⟨10.1111/cobi.13802⟩ Article dans une revue hal-03451172v1
	Underwater robots provide similar fish biodiversity assessments as divers on coral reefs Mathilde Maslin , Silvain Louis , Karen Godary-Dejean , Lionel Lapierre , Sébastien Villéger Remote Sensing in Ecology and Conservation, 2021, 7, pp.567-578. ⟨10.1002/rse2.209⟩ Article dans une revue hal-03261663v1
	Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts Marie-Charlotte Cheutin , Sébastien Villéger , Christina C Hicks , James P W Robinson , Nicholas a J Graham Microorganisms, 2021, ⟨10.3390/microorganisms9081711⟩ Article dans une revue hal-03357775v1
	Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world Joshua Cinner , Jessica Zamborain-Mason , Georgina Gurney , Nicholas Graham , M. Aaron Macneil Science, 2020, 368 (6488), pp.307-311. ⟨10.1126/science.aax9412⟩ Article dans une revue hal-03090286v1
	Morphological sorting of introduced freshwater fish species within and between donor realms Guohuan Su , Sébastien Villéger , Sébastien Brosse Global Ecology and Biogeography, 2020, 29 (5), pp.803-813. ⟨10.1111/geb.13054⟩ Article dans une revue hal-03093245v1
	Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes Marlène Chiarello , J.-C. Auguet , Nicholas Graham , Thomas Claverie , Elliott Sucré Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1927), pp.20200642. ⟨10.1098/rspb.2020.0642⟩ Article dans une revue hal-03093105v1
	Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes Nina M D Schiettekatte , Diego R Barneche , Sébastien Villéger , Jacob E Allgeier , Deron E Burkepile Functional Ecology, 2020, 34 (9), pp.1857-1869. ⟨10.1111/1365-2435.13618⟩ Article dans une revue hal-03013820v1
	A global database for metacommunity ecology, integrating species, traits, environment and space Alienor Jeliazkov , Darko Mijatovic , Stéphane Chantepie , Nigel Andrew , Raphaël Arlettaz Scientific Data , 2020, 7 (1), pp.6. ⟨10.1038/s41597-019-0344-7⟩ Article dans une revue hal-02438887v1
	Global changes threaten functional and taxonomic diversity of insular species worldwide Camille Leclerc , Sébastien Villéger , Clara Marino , Céline Bellard Diversity and Distributions, inPress, ⟨10.1111/ddi.13024⟩ Article dans une revue hal-02477847v1
	A new method to control error rates in automated species identification with deep learning algorithms Sébastien Villon , David Mouillot , Marc Chaumont , Gérard Subsol , Thomas Claverie Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-67573-7⟩ Article dans une revue lirmm-03002261v1
	Global patterns and predictors of trophic position, body size and jaw size in fishes R. Keller Kopf , Jian D. L. Yen , Dale G. Nimmo , Sebastien Brosse , Sébastien Villéger Global Ecology and Biogeography, 2020, 30 (2), pp.414--428. ⟨10.1111/geb.13227⟩ Article dans une revue hal-03413613v1
	Coral Reef Fish: Not Just a Matter of Beauty! Elyse Boudin , Frédérique Carcaillet , Anne-Sophie Tribot , Quentin Carabeux , Julie Deter Frontiers for Young Minds, 2020, 8 (1), ⟨10.3389/frym.2020.00013⟩ Article dans une revue hal-03003447v1
	High intraspecific variability in morphology and diet in tropical stream fish communities Luisa Resende Manna , Sebastien Villeger , Carla Ferreira Rezende , Rosana Mazzoni Ecology of Freshwater Fish, 2019, 28 (1), pp.41-52. ⟨10.1111/eff.12425⟩ Article dans une revue hal-01994129v1
	Fish communities diverge in species but converge in traits over three decades of warming Matthew Mclean , David Mouillot , Martin Lindegren , Sebastien Villeger , Georg Engelhard Global Change Biology, 2019, 25 (11), pp.3972--3984. ⟨10.1111/gcb.14785⟩ Article dans une revue hal-02439731v1
	Interspecific differences in the effect of fish on marine microbial plankton Sébastien Villéger , Eric Fouilland , Jérémy Argenty , Corinne Bouvier , Claire Carré Aquatic Microbial Ecology, 2019, 82 (3), pp.289-298. ⟨10.3354/ame01897⟩ Article dans une revue hal-02105424v1
	Trait structure and redundancy determine sensitivity to disturbance in marine fish communities Matthew Mclean , Arnaud Auber , Nicholas Graham , Peter Houk , Sebastien Villeger Global Change Biology, 2019, 25 (10), pp.3424-3437. ⟨10.1111/gcb.14662⟩ Article dans une revue hal-02324196v1
	An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures Anne Chao , Chun-Huo Chiu , Sebastien Villeger , I.-Fang Sun , Simon Thorn Ecological monographs, 2019, 89 (2), pp.UNSP e01343. ⟨10.1002/ecm.1343⟩ Article dans une revue hal-02403272v1
	Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread Guohuan Su , Sebastien Villeger , Sebastien Brosse Global Ecology and Biogeography, 2019, 28 (2), pp.211--221. ⟨10.1111/geb.12843⟩ Article dans une revue hal-02439848v1
	Accounting for intraspecific diversity when examining relationships between non-native species and functional diversity T. Zhao , Sébastien Villéger , J. Cucherousset Oecologia, 2019, 189 (1), pp.171-183. ⟨10.1007/s00442-018-4311-3⟩ Article dans une revue hal-01993708v1
	Species diversity and composition drive the aesthetic value of coral reef fish assemblages Anne-Sophie Tribot , Julie Deter , Thomas Claverie , François Guillhaumon , Sébastien Villéger Biology Letters, 2019, 15 (11), pp.20190703. ⟨10.1098/rsbl.2019.0703⟩ Article dans une revue hal-03090210v1
	Interspecific differences in environmental response blur trait dynamics in classic statistical analyses Matthew Mclean , David Mouillot , Sébastien Villéger , Nicholas a J Graham , Arnaud Auber Marine Biology, 2019, 166 (12), ⟨10.1007/s00227-019-3602-5⟩ Article dans une revue hal-03099050v1
	Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific Eva Maire , Sebastien Villeger , Nicholas A. J. Graham , Andrew S. Hoey , Joshua Cinner Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1883), ⟨10.1098/rspb.2018.1167⟩ Article dans une revue hal-02002283v1
	Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet Marlene Chiarello , J.-C. Auguet , Yvan Bettarel , Corinne Bouvier , Thomas Claverie Microbiome, 2018, 6, ⟨10.1186/s40168-018-0530-4⟩ Article dans une revue hal-02002252v1
	Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation Matthias Grenie , David Mouillot , Sebastien Villeger , Pierre Denelle , Caroline M. Tucker Biological Conservation, 2018, 226, pp.288-299. ⟨10.1016/j.biocon.2018.08.011⟩ Article dans une revue hal-02002180v1
	Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages Nicole Colin , Sebastien Villeger , Martin Wilkes , Adolfo De Sostoa , Alberto Maceda-Veiga Science of the Total Environment, 2018, 625, pp.861--871. ⟨10.1016/j.scitotenv.2017.12.316⟩ Article dans une revue hal-01826661v1
	Non-native species led to marked shifts in functional diversity of the world freshwater fish faunas Aurele Toussaint , Nicolas Charpin , Olivier Beauchard , Gael Grenouillet , Thierry Oberdorff Ecology Letters, 2018, 21 (11), pp.1649-1659. ⟨10.1111/ele.13141⟩ Article dans une revue hal-02002122v1
	Complementarity of the multidimensional functional and the taxonomic approaches to study phytoplankton communities in three Mediterranean coastal lagoons of different trophic status A. Leruste , Sébastien Villéger , N. Malet , R. de Wit , B. Bec Hydrobiologia, 2018, 815 (1), pp.207--227. ⟨10.1007/s10750-018-3565-4⟩ Article dans une revue hal-01826660v1
	A Climate-Driven Functional Inversion of Connected Marine Ecosystems Matthew Mclean , David Mouillot , Martin Lindegren , Georg Engelhard , Sebastien Villeger Current Biology - CB, 2018, 28 (22), pp.3654+. ⟨10.1016/j.cub.2018.09.050⟩ Article dans une revue hal-01994182v1
	Confronting species aesthetics with ecological functions in coral reef fish Anne-Sophie Tribot , Quentin Carabeux , Julie Deter , Thomas Claverie , Sebastien Villeger Scientific Reports, 2018, 8 (1), ⟨10.1038/s41598-018-29637-7⟩ Article dans une revue hal-02346580v1
	Functional biodiversity loss along natural CO2 gradients Nuria Teixido , Maria Cristina Gambi , Valeriano Parravacini , Kristy Kroeker , Fiorenza Micheli Nature Communications, 2018, 9, ⟨10.1038/s41467-018-07592-1⟩ Article dans une revue hal-01994135v1
	A Deep learning method for accurate and fast identification of coral reef fishes in underwater images Sebastien Villon , David Mouillot , Marc Chaumont , Emily Darling , Gérard Subsol Ecological Informatics, 2018, 48, pp.238-244. ⟨10.1016/j.ecoinf.2018.09.007⟩ Article dans une revue lirmm-01884005v1
	Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams Rafael P. Leitao , Jansen Zuanon , David Mouillot , Cecilia G. Leal , Robert M. Hughes Ecography, 2018, 41 (1), pp.219--232. ⟨10.1111/ecog.02845⟩ Article dans une revue hal-01826757v1
	Biogeographical region and environmental conditions drive functional traits of estuarine fish assemblages worldwide Sofia Henriques , François Guilhaumon , Sébastien Villéger , Sandra Amoroso , Susana França Fish and Fisheries, 2017, 18 (4), pp.752--771. ⟨10.1111/faf.12203⟩ Article dans une revue hal-01932910v1
	Biogeographical, environmental and anthropogenic determinants of global patterns in bird taxonomic and trait turnover Cagan H. Sekercioglu , Jean-Yves Barnagaud , W. Daniel Kissling , Constantinos Tsirogiannis , Vissarion Fisikopoulos Global Ecology and Biogeography, 2017, 26 (10), pp.1190--1200. ⟨10.1111/geb.12629⟩ Article dans une revue hal-01932915v1
	Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals Marlène Chiarello , Sébastien Villéger , Corinne Bouvier , J.-C. Auguet , Thierry Bouvier Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-15220-z⟩ Article dans une revue hal-01929494v1
	On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al . (2016) Sébastien Villéger , Eva Maire , Fabien Leprieur Ecology Letters, 2017, 20 (4), pp.554--557. ⟨10.1111/ele.12750⟩ Article dans une revue hal-01928114v1
	Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research Guillem Chust , Meike Vogt , Fabio Benedetti , Teofil Nakov , Sébastien Villéger Frontiers in Marine Science, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩ Article dans une revue hal-01545318v1
	Functional ecology of fish: current approaches and future challenges Sébastien Villéger , Sébastien Brosse , Maud Mouchet , David Mouillot , Michael J. Vanni Aquatic Sciences - Research Across Boundaries, 2017, 79 (4), pp.783--801. ⟨10.1007/s00027-017-0546-z⟩ Article dans une revue hal-01932917v1
	Rare species contribute disproportionately to the functional structure of species assemblages Rafael P. Leitão , Jansen Zuanon , Sébastien Villéger , Stephen E. Williams , Christopher Baraloto Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1828), ⟨10.1098/rspb.2016.0084⟩ Article dans une revue hal-01532639v1
	Increased taxonomic and functional similarity does not increase the trophic similarity of communities Thomas Pool , Julien Cucherousset , Stéphanie Boulêtreau , Sébastien Villéger , Angela Strecker Global Ecology and Biogeography, 2016, 25 (1), pp.46 - 54. ⟨10.1111/geb.12384⟩ Article dans une revue hal-01923719v1
	Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs Anne-Sophie Tribot , Nicolas Mouquet , Sébastien Villéger , Michel Raymond , Fabrice Hoff Scientific Reports, 2016, 6, ⟨10.1038/srep34229⟩ Article dans une revue hal-03104012v1
	Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes Stephanie d'Agata , Laurent Vigliola , Nicholas Graham , Laurent Wantiez , Valeriano Parravicini Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1844), ⟨10.1098/rspb.2016.0128⟩ Article dans une revue hal-01926552v1
	Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea Aggeliki Doxa , Florian Holon , Julie Deter , Sébastien Villéger , Pierre Boissery Ecological Indicators, 2016, 61 (2), pp.1042--1054. ⟨10.1016/j.ecolind.2015.10.062⟩ Article dans une revue hal-01444069v1
	Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread A. Toussaint , N. Charpin , S. Brosse , S. Villéger Scientific Reports, 2016, 6, pp.22125. ⟨10.1038/srep22125⟩ Article dans une revue hal-01926535v1
	Worldwide freshwater fish homogenization is driven by a few widespread non-native species Aurèle Toussaint , Olivier Beauchard , Thierry Oberdorff , Sébastien Brosse , Sébastien Villéger Biological Invasions, 2016, 18 (5), pp.1295 - 1304. ⟨10.1007/s10530-016-1067-8⟩ Article dans une revue hal-01926453v1
	How many dimensions are needed to accurately assess functional diversity? A pragmatic approach for assessing the quality of functional spaces Eva Maire , Gaël Grenouillet , Sébastien Brosse , Sébastien Villéger Global Ecology and Biogeography, 2015, 24 (6), pp.728 - 740. ⟨10.1111/geb.12299⟩ Article dans une revue hal-01919339v1
	Coral-associated viruses and bacteria in the Ha Long Bay, Vietnam The Thu Pham , van Thuoc Chu , Thu Viet Ha Bui , Thanh Thuy Nguyen , Quang Huy Tran Aquatic Microbial Ecology, 2015, 76 (2), pp.149 - 161. ⟨10.3354/ame01775⟩ Article dans une revue hal-01921797v1
	High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species Marlène Chiarello , Sébastien Villéger , Corinne Bouvier , Yvan Bettarel , Thierry Bouvier FEMS Microbiology Ecology, 2015, 91 (7), ⟨10.1093/femsec/fiv061⟩ Article dans une revue hal-01841505v1
	Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes C. Sirot , S. Villéger , D. Mouillot , Audrey M. Darnaude , J. Ramos-Miranda Ecological Indicators, 2015, 48, pp.147--156. ⟨10.1016/j.ecolind.2014.07.038⟩ Article dans une revue hal-01840060v1
	Non-native species modify the isotopic structure of freshwater fish communities across the globe A. Sagouis , J. Cucherousset , S. Villeger , F. Santoul , S. Boulêtreau Ecography, 2015, 38 (10), pp.979 - 985. ⟨10.1111/ecog.01348⟩ Article dans une revue hal-01921807v1
	Quantifying the multiple facets of isotopic diversity: New metrics for stable isotope ecology Julien Cucherousset , Sébastien Villéger Ecological Indicators, 2015, 56, pp.152 - 160. ⟨10.1016/j.ecolind.2015.03.032⟩ Article dans une revue hal-01919375v1
	From current distinctiveness to future homogenization of the world's freshwater fish faunas Sébastien Villéger , Simon Blanchet , Olivier Beauchard , Thierry Oberdorff , Sébastien Brosse Diversity and Distributions, 2015, 21 (2), pp.223 - 235. ⟨10.1111/ddi.12242⟩ Article dans une revue hal-01841305v1
	Temporal changes in the taxonomic and functional diversity of fish communities in shallow Chinese lakes: the effects of river-lake connections and aquaculture Lin Cheng , Simon Blanchet , Géraldine Loot , Sebastien Villéger , Tanglin Zhang Aquatic Conservation: Marine and Freshwater Ecosystems, 2014, 24 (1), pp.23-34. ⟨10.1002/aqc.2418⟩ Article dans une revue hal-02965442v1
	Toward a loss of functional diversity in stream fish assemblages under climate change Laetitia Buisson , Gaël Grenouillet , Sébastien Villéger , Julie Canal , Pascal Laffaille Global Change Biology, 2013, vol. 19, pp. 387-400. ⟨10.1111/gcb.12056⟩ Article dans une revue hal-00956411v1
	Colossal Aggregations of Giant Alien Freshwater Fish as a Potential Biogeochemical Hotspot Stéphanie Boulêtreau , Julien Cucherousset , Sébastien Villéger , Rémi Masson , Frédéric Santoul PLoS ONE, 2011, vol. 6, ⟨10.1371/journal.pone.0025732⟩ Article dans une revue hal-00912411v1
	Defining and measuring ecological specialization Vincent Devictor , Joanne Clavel , Romain Julliard , Sébastien Lavergne , David Mouillot Journal of Applied Ecology, 2010, 47 (1), pp.15-25. ⟨10.1111/j.1365-2664.2009.01744.x⟩ Article dans une revue hal-02939500v1
	New multidimensional functional diversity indices for a multifaceted framework in functional ecology S. Villeger , N.W.H. Mason , D. Mouillot Ecology, 2008, 89 (8), pp.2290-2301. ⟨10.1890/07-1206.1⟩ Article dans une revue hal-02599021v1

	Coupling underwater autonomous vehicles and automatic video analysis for efficient monitoring of coral reef ecosystems: promises and challenges Thomas Claverie , Marc Chaumont , Karen Godary-Dejean , Adrien Hereau , Lionel Lapierre ICRS 2021 - 15th International Coral Reef Symposium, Jul 2021, Bremen (virtual), Germany Communication dans un congrès lirmm-03820865v1
	A deep learning algorithm for automatic identification of coral reef fish species on images Sebastien Villon , David Mouillot , Marc Chaumont , Emily Darling , Gérard Subsol WCMB: World Conference on Marine Biodiversity, May 2018, Montréal, Canada Communication dans un congrès lirmm-01883997v1
	Formal Method for Mission Controller Generation of a Mobile Robot Silvain Louis , Karen Godary-Dejean , Lionel Lapierre , Thomas Claverie , Sébastien Villéger TAROS 2017 - 18th Annual Conference Towards Autonomous Robotic Systems, Jul 2017, Guildford, United Kingdom. pp.586-600, ⟨10.1007/978-3-319-64107-2_48⟩ Communication dans un congrès lirmm-01589007v1
	Quaternion based control for robotic observation of marine diversity Silvain Louis , Lionel Lapierre , Karen Godary-Dejean , Yadpiroon Onmek , Thomas Claverie OCEANS, Jun 2017, Aberdeen, United Kingdom. ⟨10.1109/OCEANSE.2017.8085006⟩ Communication dans un congrès lirmm-01588991v1
	Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods Sébastien Villon , Marc Chaumont , Gérard Subsol , Sébastien Villéger , Thomas Claverie ACIVS: Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy Communication dans un congrès hal-01374123v1

Sébastien Villéger

Publications

Functional changes across marine habitats due to ocean acidification

Detecting benefits of protection level on diversity facets in a sea of temporal scarcity

Automated identification of invasive rabbitfishes in underwater images from the Mediterranean Sea

The role of fish feces for nutrient cycling on coral reefs

Inferring functional diversity from environmental DNA metabarcoding

Behavior of reef fishes during a submarine magnitude 5 earthquake

Stocking practices shape the taxonomic and functional diversity of fish communities in gravel pit lakes

An invasive herbivorous fish (Siganus rivulatus) influences both benthic and planktonic microbes through defecation and nutrient excretion

Contemporary environment and historical legacy explain functional diversity of freshwater fishes in the world rivers

mFD: an R package to compute and illustrate the multiple facets of functional diversity

Mesophotic reefs are not refugia for neither taxonomic nor functional diversity of reef fishes

Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold

Linking key human-environment theories to inform the sustainability of coral reefs

Combining stereo‐video monitoring and physiological trials to estimate reef fish metabolic demands in the wild

Shift and homogenization of gut microbiome during invasion in marine fishes

Similar trait structure and vulnerability in pelagic fish faunas on two remote island systems

Mesophotic coral ecosystems of French Polynesia are hotspots of alpha and beta generic diversity for scleractinian assemblages

Biological trade-offs underpin coral reef ecosystem functioning

Long‐duration remote underwater videos reveal that grazing by fishes is highly variable through time and dominated by non‐indigenous species

Predation Cues Lead to Reduced Foraging of Invasive Siganus rivulatus in the Mediterranean

FISHMORPH: A global database on morphological traits of freshwater fishes

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts

Ecological Specialization Within a Carnivorous Fish Family Is Supported by a Herbivorous Microbiome Shaped by a Combination of Gut Traits and Specific Diet

Trait similarity in reef fish faunas across the world’s oceans

The dimensionality and structure of species trait spaces

Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient

Human impacts on global freshwater fish biodiversity

Automatic underwater fish species classification with limited data using few-shot learning

Phylogenetic conservatism drives nutrient dynamics of coral reef fishes

Use of environmental DNA in assessment of fish functional and phylogenetic diversity

Underwater robots provide similar fish biodiversity assessments as divers on coral reefs

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts

Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world

Morphological sorting of introduced freshwater fish species within and between donor realms

Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes

Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes

A global database for metacommunity ecology, integrating species, traits, environment and space

Global changes threaten functional and taxonomic diversity of insular species worldwide

A new method to control error rates in automated species identification with deep learning algorithms

Global patterns and predictors of trophic position, body size and jaw size in fishes

Coral Reef Fish: Not Just a Matter of Beauty!

High intraspecific variability in morphology and diet in tropical stream fish communities

Fish communities diverge in species but converge in traits over three decades of warming

Interspecific differences in the effect of fish on marine microbial plankton

Trait structure and redundancy determine sensitivity to disturbance in marine fish communities

An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures

Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread

Accounting for intraspecific diversity when examining relationships between non-native species and functional diversity

Species diversity and composition drive the aesthetic value of coral reef fish assemblages

Interspecific differences in environmental response blur trait dynamics in classic statistical analyses

Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific

Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet

Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation

Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages

Non-native species led to marked shifts in functional diversity of the world freshwater fish faunas

Complementarity of the multidimensional functional and the taxonomic approaches to study phytoplankton communities in three Mediterranean coastal lagoons of different trophic status

A Climate-Driven Functional Inversion of Connected Marine Ecosystems

Confronting species aesthetics with ecological functions in coral reef fish

Functional biodiversity loss along natural CO2 gradients

A Deep learning method for accurate and fast identification of coral reef fishes in underwater images

Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams

Biogeographical region and environmental conditions drive functional traits of estuarine fish assemblages worldwide

Biogeographical, environmental and anthropogenic determinants of global patterns in bird taxonomic and trait turnover

Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals

On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al . (2016)

Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research

Functional ecology of fish: current approaches and future challenges

Rare species contribute disproportionately to the functional structure of species assemblages

Increased taxonomic and functional similarity does not increase the trophic similarity of communities

Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs

Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes

Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea

Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread

Worldwide freshwater fish homogenization is driven by a few widespread non-native species

How many dimensions are needed to accurately assess functional diversity? A pragmatic approach for assessing the quality of functional spaces

Coral-associated viruses and bacteria in the Ha Long Bay, Vietnam

High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species

Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes