Sébastien Villéger

Mathilde Maslin, Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Sébastien Villéger, et al.. Underwater robots provide similar fish biodiversity assessments as divers on coral reefs. Remote Sensing in Ecology and Conservation, In press, ⟨10.1002/rse2.209⟩. ⟨hal-03261663⟩

Nina Schiettekatte, Diego Barneche, Sébastien Villéger, Jacob Allgeier, Deron Burkepile, et al.. Nutrient limitation, bioenergetics and stoichiometry: A new model to predict elemental fluxes mediated by fishes. Functional Ecology, Wiley, 2020, 34 (9), pp.1857-1869. ⟨10.1111/1365-2435.13618⟩. ⟨hal-03013820⟩

Marlène Chiarello, Jean-Christophe Auguet, Nicholas Graham, Thomas Claverie, Elliott Sucré, et al.. Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2020, 287 (1927), pp.20200642. ⟨10.1098/rspb.2020.0642⟩. ⟨hal-03093105⟩

Joshua Cinner, Jessica Zamborain-Mason, Georgina Gurney, Nicholas Graham, M. Aaron Macneil, et al.. Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world. Science, American Association for the Advancement of Science, 2020, 368 (6488), pp.307-311. ⟨10.1126/science.aax9412⟩. ⟨hal-03090286⟩

Camille Leclerc, Sébastien Villéger, Clara Marino, Céline Bellard. Global changes threaten functional and taxonomic diversity of insular species worldwide. Diversity and Distributions, Wiley, In press, ⟨10.1111/ddi.13024⟩. ⟨hal-02477847⟩

Sébastien Villon, David Mouillot, Marc Chaumont, Gérard Subsol, Thomas Claverie, et al.. A new method to control error rates in automated species identification with deep learning algorithms. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-67573-7⟩. ⟨lirmm-03002261⟩

Elyse Boudin, Frédérique Carcaillet, Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, et al.. Coral Reef Fish: Not Just a Matter of Beauty!. Frontiers for Young Minds, 2020, 8 (1), ⟨10.3389/frym.2020.00013⟩. ⟨hal-03003447⟩

Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , Nature Publishing Group, 2020, 7 (1), ⟨10.1038/s41597-019-0344-7⟩. ⟨mnhn-03082730⟩

Alienor Jeliazkov, Darko Mijatovic, Stéphane Chantepie, Nigel Andrew, Raphaël Arlettaz, et al.. A global database for metacommunity ecology, integrating species, traits, environment and space. Scientific Data , Nature Publishing Group, 2020, 7 (1), pp.6. ⟨10.1038/s41597-019-0344-7⟩. ⟨hal-02438887⟩

Guohuan Su, Sébastien Villéger, Sébastien Brosse. Morphological sorting of introduced freshwater fish species within and between donor realms. Global Ecology and Biogeography, Wiley, 2020, 29 (5), pp.803-813. ⟨10.1111/geb.13054⟩. ⟨hal-03093245⟩

Matthew Mclean, David Mouillot, Sébastien Villéger, Nicholas Graham, Arnaud Auber. Interspecific differences in environmental response blur trait dynamics in classic statistical analyses. Marine Biology, Springer Verlag, 2019, 166 (12), ⟨10.1007/s00227-019-3602-5⟩. ⟨hal-03099050⟩

Matthew Mclean, Arnaud Auber, Nicholas Graham, Peter Houk, Sebastien Villeger, et al.. Trait structure and redundancy determine sensitivity to disturbance in marine fish communities. Global Change Biology, Wiley, 2019, 25 (10), pp.3424-3437. ⟨10.1111/gcb.14662⟩. ⟨hal-02324196⟩

Matthew Mclean, David Mouillot, Martin Lindegren, Sebastien Villeger, Georg Engelhard, et al.. Fish communities diverge in species but converge in traits over three decades of warming. Global Change Biology, Wiley, 2019, 25 (11), pp.3972--3984. ⟨10.1111/gcb.14785⟩. ⟨hal-02439731⟩

Luisa Resende Manna, Sebastien Villeger, Carla Ferreira Rezende, Rosana Mazzoni. High intraspecific variability in morphology and diet in tropical stream fish communities. Ecology of Freshwater Fish, Consejo Superior de Investigaciones Científicas, 2019, 28 (1), pp.41-52. ⟨10.1111/eff.12425⟩. ⟨hal-01994129⟩

Anne Chao, Chun-Huo Chiu, Sebastien Villeger, I.-Fang Sun, Simon Thorn, et al.. An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures. Ecological monographs, Ecological Society of America, 2019, 89 (2), pp.UNSP e01343. ⟨10.1002/ecm.1343⟩. ⟨hal-02403272⟩

Guohuan Su, Sebastien Villeger, Sebastien Brosse. Morphological diversity of freshwater fishes differs between realms, but morphologically extreme species are widespread. Global Ecology and Biogeography, Wiley, 2019, 28 (2), pp.211--221. ⟨10.1111/geb.12843⟩. ⟨hal-02439848⟩

Anne-Sophie Tribot, Julie Deter, Thomas Claverie, François Guillhaumon, Sébastien Villéger, et al.. Species diversity and composition drive the aesthetic value of coral reef fish assemblages. Biology Letters, Royal Society, The, 2019, 15 (11), pp.20190703. ⟨10.1098/rsbl.2019.0703⟩. ⟨hal-03090210⟩

Sébastien Villéger, Eric Fouilland, Jérémy Argenty, Corinne Bouvier, Claire Carré, et al.. Interspecific differences in the effect of fish on marine microbial plankton. Aquatic Microbial Ecology, Inter Research, 2019, 82 (3), pp.289-298. ⟨10.3354/ame01897⟩. ⟨hal-02105424⟩

Nuria Teixido, Maria Cristina Gambi, Valeriano Parravacini, Kristy Kroeker, Fiorenza Micheli, et al.. Functional biodiversity loss along natural CO2 gradients. Nature Communications, Nature Publishing Group, 2018, 9, ⟨10.1038/s41467-018-07592-1⟩. ⟨hal-01994135⟩

Anne-Sophie Tribot, Quentin Carabeux, Julie Deter, Thomas Claverie, Sebastien Villeger, et al.. Confronting species aesthetics with ecological functions in coral reef fish. Scientific Reports, Nature Publishing Group, 2018, 8 (1), ⟨10.1038/s41598-018-29637-7⟩. ⟨hal-02346580⟩

Matthias Grenie, David Mouillot, Sebastien Villeger, Pierre Denelle, Caroline M. Tucker, et al.. Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation. Biological Conservation, Elsevier, 2018, 226, pp.288-299. ⟨10.1016/j.biocon.2018.08.011⟩. ⟨hal-02002180⟩

Rafael P. Leitao, Jansen Zuanon, David Mouillot, Cecilia G. Leal, Robert M. Hughes, et al.. Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams. Ecography, Wiley, 2018, 41 (1), pp.219--232. ⟨10.1111/ecog.02845⟩. ⟨hal-01826757⟩

Eva Maire, Sebastien Villeger, Nicholas A. J. Graham, Andrew S. Hoey, Joshua Cinner, et al.. Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2018, 285 (1883), ⟨10.1098/rspb.2018.1167⟩. ⟨hal-02002283⟩

Aurele Toussaint, Nicolas Charpin, Olivier Beauchard, Gael Grenouillet, Thierry Oberdorff, et al.. Non-native species led to marked shifts in functional diversity of the world freshwater fish faunas. Ecology Letters, Wiley, 2018, 21 (11), pp.1649-1659. ⟨10.1111/ele.13141⟩. ⟨hal-02002122⟩

Nicole Colin, Sebastien Villeger, Martin Wilkes, Adolfo Sostoa, Alberto Maceda-Veiga. Functional diversity measures revealed impacts of non-native species and habitat degradation on species-poor freshwater fish assemblages. Science of the Total Environment, Elsevier, 2018, 625, pp.861--871. ⟨10.1016/j.scitotenv.2017.12.316⟩. ⟨hal-01826661⟩

Sebastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A Deep learning method for accurate and fast identification of coral reef fishes in underwater images. Ecological Informatics, Elsevier, 2018, 48, pp.238-244. ⟨10.1016/j.ecoinf.2018.09.007⟩. ⟨lirmm-01884005⟩

Matthew Mclean, David Mouillot, Martin Lindegren, Georg Engelhard, Sebastien Villeger, et al.. A Climate-Driven Functional Inversion of Connected Marine Ecosystems. Current Biology - CB, Elsevier, 2018, 28 (22), pp.3654+. ⟨10.1016/j.cub.2018.09.050⟩. ⟨hal-01994182⟩

Marlene Chiarello, Jean-Christophe Auguet, Yvan Bettarel, Corinne Bouvier, Thomas Claverie, et al.. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome, BioMed Central, 2018, 6, ⟨10.1186/s40168-018-0530-4⟩. ⟨hal-02002252⟩

Guillem Chust, Meike Vogt, Fabio Benedetti, Teofil Nakov, Sébastien Villéger, et al.. Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research. Frontiers in Marine Science, Frontiers Media, 2017, 4, pp.68. ⟨10.3389/fmars.2017.00068⟩. ⟨hal-01545318⟩

Sofia Henriques, François Guilhaumon, Sébastien Villéger, Sandra Amoroso, Susana França, et al.. Biogeographical region and environmental conditions drive functional traits of estuarine fish assemblages worldwide. Fish and Fisheries, Wiley-Blackwell, 2017, 18 (4), pp.752--771. ⟨10.1111/faf.12203⟩. ⟨hal-01932910⟩

Sébastien Villéger, Eva Maire, Fabien Leprieur. On the risks of using dendrograms to measure functional diversity and multidimensional spaces to measure phylogenetic diversity: a comment on Sobral et al . (2016). Ecology Letters, Wiley, 2017, 20 (4), pp.554--557. ⟨10.1111/ele.12750⟩. ⟨hal-01928114⟩

Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Jean-Christophe Auguet, Thierry Bouvier. Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals. Scientific Reports, Nature Publishing Group, 2017, 7 (1), ⟨10.1038/s41598-017-15220-z⟩. ⟨hal-01929494⟩

Sébastien Villéger, Sébastien Brosse, Maud Mouchet, David Mouillot, Michael J. Vanni. Functional ecology of fish: current approaches and future challenges. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2017, 79 (4), pp.783--801. ⟨10.1007/s00027-017-0546-z⟩. ⟨hal-01932917⟩

Stephanie d'Agata, Laurent Vigliola, Nicholas Graham, Laurent Wantiez, Valeriano Parravicini, et al.. Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2016, 283 (1844), ⟨10.1098/rspb.2016.0128⟩. ⟨hal-01926552⟩

Aurèle Toussaint, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse, Sébastien Villéger. Worldwide freshwater fish homogenization is driven by a few widespread non-native species. Biological Invasions, Springer Verlag, 2016, 18 (5), pp.1295 - 1304. ⟨10.1007/s10530-016-1067-8⟩. ⟨hal-01926453⟩

Aggeliki Doxa, Florian Holon, Julie Deter, Sébastien Villéger, Pierre Boissery, et al.. Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea. Ecological Indicators, Elsevier, 2016, 61 (2), pp.1042--1054. ⟨10.1016/j.ecolind.2015.10.062⟩. ⟨hal-01444069⟩

Thomas Pool, Julien Cucherousset, Stéphanie Boulêtreau, Sébastien Villéger, Angela Strecker, et al.. Increased taxonomic and functional similarity does not increase the trophic similarity of communities. Global Ecology and Biogeography, Wiley, 2016, 25 (1), pp.46 - 54. ⟨10.1111/geb.12384⟩. ⟨hal-01923719⟩

Rafael P. Leitão, Jansen Zuanon, Sébastien Villéger, Stephen E. Williams, Christopher Baraloto, et al.. Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, Royal Society, The, 2016, 283 (1828), ⟨10.1098/rspb.2016.0084⟩. ⟨hal-01532639⟩

Anne-Sophie Tribot, Nicolas Mouquet, Sébastien Villéger, Michel Raymond, Fabrice Hoff, et al.. Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs. Scientific Reports, Nature Publishing Group, 2016, 6, ⟨10.1038/srep34229⟩. ⟨hal-03104012⟩

A. Toussaint, N. Charpin, S. Brosse, S. Villéger. Global functional diversity of freshwater fish is concentrated in the Neotropics while functional vulnerability is widespread. Scientific Reports, Nature Publishing Group, 2016, 6, pp.22125. ⟨10.1038/srep22125⟩. ⟨hal-01926535⟩

The Thu Pham, van Thuoc Chu, Thu Viet Ha Bui, Thanh Thuy Nguyen, Quang Huy Tran, et al.. Coral-associated viruses and bacteria in the Ha Long Bay, Vietnam. Aquatic Microbial Ecology, Inter Research, 2015, 76 (2), pp.149 - 161. ⟨10.3354/ame01775⟩. ⟨hal-01921797⟩

Marlène Chiarello, Sébastien Villéger, Corinne Bouvier, Yvan Bettarel, Thierry Bouvier. High diversity of skin-associated bacterial communities of marine fishes is promoted by their high variability among body parts, individuals and species. FEMS Microbiology Ecology, Wiley-Blackwell, 2015, 91 (7), ⟨10.1093/femsec/fiv061⟩. ⟨hal-01841505⟩

Sébastien Villéger, Simon Blanchet, Olivier Beauchard, Thierry Oberdorff, Sébastien Brosse. From current distinctiveness to future homogenization of the world's freshwater fish faunas. Diversity and Distributions, Wiley, 2015, 21 (2), pp.223 - 235. ⟨10.1111/ddi.12242⟩. ⟨hal-01841305⟩

Julien Cucherousset, Sébastien Villéger. Quantifying the multiple facets of isotopic diversity: New metrics for stable isotope ecology. Ecological Indicators, Elsevier, 2015, 56, pp.152 - 160. ⟨10.1016/j.ecolind.2015.03.032⟩. ⟨hal-01919375⟩

C. Sirot, S. Villéger, D. Mouillot, A.M. Darnaude, J. Ramos-Miranda, et al.. Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes. Ecological Indicators, Elsevier, 2015, 48, pp.147--156. ⟨10.1016/j.ecolind.2014.07.038⟩. ⟨hal-01840060⟩

Eva Maire, Gaël Grenouillet, Sébastien Brosse, Sébastien Villéger. How many dimensions are needed to accurately assess functional diversity? A pragmatic approach for assessing the quality of functional spaces. Global Ecology and Biogeography, Wiley, 2015, 24 (6), pp.728 - 740. ⟨10.1111/geb.12299⟩. ⟨hal-01919339⟩

A. Sagouis, J. Cucherousset, S. Villeger, F. Santoul, S. Boulêtreau. Non-native species modify the isotopic structure of freshwater fish communities across the globe. Ecography, Wiley, 2015, 38 (10), pp.979 - 985. ⟨10.1111/ecog.01348⟩. ⟨hal-01921807⟩

Lin Cheng, Simon Blanchet, Géraldine Loot, Sebastien Villéger, Tanglin Zhang, et al.. Temporal changes in the taxonomic and functional diversity of fish communities in shallow Chinese lakes: the effects of river-lake connections and aquaculture. Aquatic Conservation: Marine and Freshwater Ecosystems, Wiley, 2014, 24 (1), pp.23-34. ⟨10.1002/aqc.2418⟩. ⟨hal-02965442⟩

Laetitia Buisson, Gaël Grenouillet, Sébastien Villéger, Julie Canal, Pascal Laffaille. Toward a loss of functional diversity in stream fish assemblages under climate change. Global Change Biology, Wiley, 2013, vol. 19, pp. 387-400. ⟨10.1111/gcb.12056⟩. ⟨hal-00956411⟩

Stéphanie Boulêtreau, Julien Cucherousset, Sébastien Villéger, Rémi Masson, Frédéric Santoul. Colossal Aggregations of Giant Alien Freshwater Fish as a Potential Biogeochemical Hotspot. PLoS ONE, Public Library of Science, 2011, vol. 6, ⟨10.1371/journal.pone.0025732⟩. ⟨hal-00912411⟩

Vincent Devictor, Joanne Clavel, Romain Julliard, Sébastien Lavergne, David Mouillot, et al.. Defining and measuring ecological specialization. Journal of Applied Ecology, Wiley, 2010, 47 (1), pp.15-25. ⟨10.1111/j.1365-2664.2009.01744.x⟩. ⟨hal-02939500⟩

Sebastien Villon, David Mouillot, Marc Chaumont, Emily Darling, Gérard Subsol, et al.. A deep learning algorithm for automatic identification of coral reef fish species on images. WCMB: World Conference on Marine Biodiversity, May 2018, Montréal, Canada. ⟨lirmm-01883997⟩

Silvain Louis, Lionel Lapierre, Karen Godary-Dejean, Yadpiroon Onmek, Thomas Claverie, et al.. Quaternion based control for robotic observation of marine diversity. OCEANS, Jun 2017, Aberdeen, United Kingdom. ⟨10.1109/OCEANSE.2017.8085006⟩. ⟨lirmm-01588991⟩

Silvain Louis, Karen Godary-Dejean, Lionel Lapierre, Thomas Claverie, Sébastien Villéger. Formal Method for Mission Controller Generation of a Mobile Robot. TAROS: Towards Autonomous Robotic Systems, Jul 2017, University of Surrey, Guildford, United Kingdom. pp.586-600, ⟨10.1007/978-3-319-64107-2_48⟩. ⟨lirmm-01589007⟩

Sébastien Villon, Marc Chaumont, Gérard Subsol, Sébastien Villéger, Thomas Claverie, et al.. Coral reef fish detection and recognition in underwater videos by supervised machine learning : Comparison between Deep Learning and HOG+SVM methods. ACIVS: Advanced Concepts for Intelligent Vision Systems, Oct 2016, Lecce, Italy. ⟨hal-01374123⟩